Wall clock time and date at job start Tue Mar 31 2020 06:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34223 * 116.99966 * 2 1 4 4 O 1.20827 * 120.00042 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99896 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.70233 * 358.49951 * 5 3 2 7 7 C 1.53191 * 109.58524 * 238.14424 * 5 3 2 8 8 C 1.53044 * 109.31233 * 185.57839 * 7 5 3 9 9 H 1.09000 * 109.45783 * 301.35711 * 8 7 5 10 10 C 1.52995 * 109.46007 * 181.38502 * 8 7 5 11 11 C 1.53036 * 109.53724 * 61.36171 * 8 7 5 12 12 C 1.53616 * 109.24528 * 298.51223 * 11 8 7 13 13 N 1.46921 * 109.58579 * 118.85547 * 5 3 2 14 14 C 1.34774 * 120.63370 * 353.36925 * 13 5 3 15 15 O 1.21281 * 119.99936 * 353.96140 * 14 13 5 16 16 C 1.50701 * 120.00275 * 173.96115 * 14 13 5 17 17 C 1.52996 * 109.47477 * 180.02562 * 16 14 13 18 18 C 1.50701 * 109.47477 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99613 * 359.97438 * 18 17 16 20 20 C 1.37871 * 119.99849 * 179.97438 * 18 17 16 21 21 N 1.31508 * 120.00572 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99523 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47009 * 180.02562 * 22 20 18 24 24 H 1.48498 * 109.47502 * 299.99814 * 22 20 18 25 25 H 1.48505 * 109.47456 * 60.00164 * 22 20 18 26 26 H 1.09004 * 109.47685 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47071 * 299.99690 * 1 2 3 28 28 H 1.09002 * 109.47809 * 59.99278 * 1 2 3 29 29 H 1.09004 * 109.49762 * 305.52773 * 7 5 3 30 30 H 1.09001 * 109.49879 * 65.59173 * 7 5 3 31 31 H 1.09005 * 109.47288 * 59.99786 * 10 8 7 32 32 H 1.08996 * 109.47525 * 179.97438 * 10 8 7 33 33 H 1.09003 * 109.47421 * 300.00001 * 10 8 7 34 34 H 1.09004 * 109.50051 * 58.59142 * 11 8 7 35 35 H 1.09008 * 109.49448 * 178.68085 * 11 8 7 36 36 H 1.09004 * 109.74244 * 295.11750 * 12 11 8 37 37 H 1.08997 * 109.66901 * 174.55320 * 12 11 8 38 38 H 1.09001 * 109.47111 * 59.99711 * 16 14 13 39 39 H 1.09005 * 109.47068 * 300.00651 * 16 14 13 40 40 H 1.08994 * 109.47135 * 59.99598 * 17 16 14 41 41 H 1.09004 * 109.46694 * 299.99967 * 17 16 14 42 42 H 0.96998 * 119.99774 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9870 0.2696 0.0259 7 6 4.0397 2.0621 1.2253 8 6 5.5555 2.2583 1.1464 9 1 6.0456 1.2858 1.1010 10 6 6.0368 3.0144 2.3863 11 6 5.9028 3.0629 -0.1082 12 6 5.4513 2.2820 -1.3516 13 7 4.0227 1.9679 -1.2130 14 6 3.1485 2.3042 -2.1820 15 8 1.9940 1.9397 -2.1103 16 6 3.6055 3.1330 -3.3547 17 6 2.4270 3.3716 -4.3008 18 6 2.8839 4.2010 -5.4732 19 1 3.9119 4.5259 -5.5368 20 6 1.9895 4.5450 -6.4644 21 7 0.7378 4.1490 -6.3872 22 14 2.5561 5.5725 -7.9180 23 1 1.4122 5.8041 -8.8362 24 1 3.0712 6.8774 -7.4310 25 1 3.6349 4.8534 -8.6420 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3635 0.5139 -0.8899 29 1 3.5476 3.0345 1.2455 30 1 3.7906 1.5094 2.1311 31 1 5.7906 2.4408 3.2800 32 1 7.1164 3.1539 2.3306 33 1 5.5464 3.9868 2.4322 34 1 5.3931 4.0260 -0.0755 35 1 6.9803 3.2224 -0.1514 36 1 6.0226 1.3572 -1.4331 37 1 5.6070 2.8897 -2.2430 38 1 4.3975 2.6053 -3.8861 39 1 3.9837 4.0908 -2.9973 40 1 1.6354 3.8995 -3.7692 41 1 2.0486 2.4139 -4.6583 42 1 0.4439 3.6146 -5.6330 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362168326.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:21 Heat of formation + Delta-G solvation = -135.595246 kcal Electronic energy + Delta-G solvation = -23604.835457 eV Core-core repulsion = 20163.569735 eV Total energy + Delta-G solvation = -3441.265723 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.02426 -39.13898 -37.73485 -36.02533 -34.01051 -33.83466 -32.02977 -30.58698 -28.53734 -27.61910 -25.46185 -24.19116 -23.52698 -22.21704 -20.65037 -20.43869 -18.73768 -17.64122 -17.02190 -16.38377 -16.33168 -15.79708 -15.38775 -15.26916 -14.61524 -14.22895 -13.93697 -13.73106 -13.64102 -13.50452 -13.09877 -12.86696 -12.45533 -12.17614 -12.08010 -12.00450 -11.81750 -11.58829 -11.44360 -11.31085 -10.95454 -10.82178 -10.72749 -10.47613 -10.12578 -10.11019 -9.99856 -9.86490 -9.19607 -8.63703 -8.51763 -8.27092 -6.30421 -4.00595 2.34887 2.83899 3.05491 3.26371 3.45848 3.48544 3.67315 4.44973 4.47462 4.53671 4.58569 4.74513 4.95423 4.98002 5.12161 5.23991 5.29501 5.34853 5.36043 5.39811 5.43388 5.47467 5.50108 5.60610 5.72619 5.75043 5.76535 5.86308 5.91970 6.04570 6.07487 6.16099 6.44147 6.71200 6.72514 7.49559 7.52642 7.58484 8.10952 8.20491 8.49730 8.55357 8.92800 9.73309 11.10436 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.017306 B = 0.004871 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.515063 B = 5746.795665 C = 7057.277811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.364 6.364 3 C 0.477 3.523 4 O -0.489 6.489 5 C 0.157 3.843 6 H 0.096 0.904 7 C -0.119 4.119 8 C -0.088 4.088 9 H 0.075 0.925 10 C -0.146 4.146 11 C -0.134 4.134 12 C 0.112 3.888 13 N -0.617 5.617 14 C 0.510 3.490 15 O -0.510 6.510 16 C -0.115 4.115 17 C 0.025 3.975 18 C -0.608 4.608 19 H 0.049 0.951 20 C 0.015 3.985 21 N -0.910 5.910 22 Si 1.070 2.930 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.288 1.288 26 H 0.095 0.905 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.015 0.985 41 H 0.013 0.987 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.726 -7.199 17.811 22.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.281 6.281 3 C 0.319 3.681 4 O -0.375 6.375 5 C 0.052 3.948 6 H 0.113 0.887 7 C -0.157 4.157 8 C -0.107 4.107 9 H 0.094 0.906 10 C -0.203 4.203 11 C -0.172 4.172 12 C -0.011 4.011 13 N -0.356 5.356 14 C 0.300 3.700 15 O -0.385 6.385 16 C -0.155 4.155 17 C -0.013 4.013 18 C -0.646 4.646 19 H 0.067 0.933 20 C -0.189 4.189 21 N -0.546 5.546 22 Si 0.898 3.102 23 H -0.208 1.208 24 H -0.215 1.215 25 H -0.215 1.215 26 H 0.113 0.887 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.116 0.884 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.033 0.967 41 H 0.032 0.968 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.308 -6.386 16.414 20.407 hybrid contribution 0.418 -0.703 1.484 1.695 sum 10.726 -7.089 17.898 22.037 Atomic orbital electron populations 1.23145 0.76350 1.02864 1.02675 1.86369 1.23462 1.33478 1.84837 1.22666 0.90774 0.81952 0.72750 1.90671 1.66396 1.36130 1.44267 1.20562 0.88632 0.98057 0.87567 0.88658 1.21963 0.96604 1.01617 0.95529 1.21090 0.94441 0.99757 0.95406 0.90638 1.21807 1.01122 1.00482 0.96889 1.22124 1.01664 0.99581 0.93843 1.21878 0.79649 1.00086 0.99459 1.48316 1.08954 1.60633 1.17669 1.21746 0.85122 0.79494 0.83589 1.90655 1.18631 1.53332 1.75868 1.21711 1.02694 0.97984 0.93074 1.19025 0.92066 0.97015 0.93165 1.22002 0.97998 1.36730 1.07907 0.93272 1.25844 0.94076 0.97832 1.01141 1.70728 1.16358 1.34540 1.32950 0.83537 0.75372 0.75740 0.75502 1.20772 1.21477 1.21465 0.88704 0.92536 0.91363 0.90034 0.90350 0.92578 0.92324 0.92454 0.90905 0.90292 0.91106 0.88382 0.89962 0.89878 0.96667 0.96831 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 10.56 101.05 1.07 1.68 16 2 O -0.36 -6.00 10.56 -41.15 -0.43 -6.43 16 3 C 0.48 8.47 4.52 36.01 0.16 8.63 16 4 O -0.49 -10.49 14.33 -26.92 -0.39 -10.87 16 5 C 0.16 2.17 3.34 -68.75 -0.23 1.94 16 6 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 7 C -0.12 -1.29 4.60 -26.61 -0.12 -1.41 16 8 C -0.09 -0.73 2.68 -90.58 -0.24 -0.97 16 9 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 10 C -0.15 -1.02 9.19 37.15 0.34 -0.67 16 11 C -0.13 -1.19 5.38 -26.39 -0.14 -1.33 16 12 C 0.11 1.21 6.38 -3.49 -0.02 1.19 16 13 N -0.62 -9.41 2.97 -166.27 -0.49 -9.90 16 14 C 0.51 10.41 7.39 -10.99 -0.08 10.33 16 15 O -0.51 -12.45 11.74 -21.05 -0.25 -12.70 16 16 C -0.11 -2.43 4.00 -27.88 -0.11 -2.54 16 17 C 0.02 0.68 3.57 -27.88 -0.10 0.58 16 18 C -0.61 -17.71 9.11 -34.44 -0.31 -18.03 16 19 H 0.05 1.36 7.74 -52.48 -0.41 0.95 16 20 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 21 N -0.91 -29.25 13.65 55.43 0.76 -28.50 16 22 Si 1.07 25.71 29.90 -169.99 -5.08 20.62 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 26 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.06 0.73 8.13 -51.93 -0.42 0.30 16 28 H 0.07 1.13 8.13 -51.93 -0.42 0.71 16 29 H 0.08 1.07 7.94 -51.93 -0.41 0.65 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.10 1.08 5.93 -51.93 -0.31 0.77 16 38 H 0.08 1.56 7.68 -51.93 -0.40 1.16 16 39 H 0.08 1.64 7.95 -51.93 -0.41 1.23 16 40 H 0.01 0.46 7.97 -51.93 -0.41 0.04 16 41 H 0.01 0.40 7.96 -51.93 -0.41 -0.01 16 42 H 0.27 8.92 7.22 -40.82 -0.29 8.63 16 LS Contribution 338.72 15.07 5.10 5.10 Total: -1.00 -37.40 338.72 -7.60 -45.01 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -6.93 Total: -2.09 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 0.11 Total: -0.24 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.26 Total: -38.40 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -1.07 Total: -30.01 kcal Atomic # 14 Polarization: 25.71 SS G_CDS: -5.08 Total: 20.62 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -37.40 -7.60 -45.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362168326.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.589 kcal (2) G-P(sol) polarization free energy of solvation -37.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds