Wall clock time and date at job start Tue Mar 31 2020 06:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34224 * 116.99985 * 2 1 4 4 O 1.20823 * 120.00115 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99770 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.58580 * 353.17890 * 5 3 2 7 7 C 1.53191 * 109.58200 * 232.89824 * 5 3 2 8 8 C 1.53049 * 109.31100 * 185.43482 * 7 5 3 9 9 H 1.09000 * 109.45882 * 181.38393 * 8 7 5 10 10 C 1.53001 * 109.45837 * 301.36060 * 8 7 5 11 11 C 1.53041 * 109.53581 * 61.36446 * 8 7 5 12 12 C 1.53198 * 109.31389 * 298.63409 * 11 8 7 13 13 N 1.46921 * 109.70224 * 113.53902 * 5 3 2 14 14 C 1.34767 * 120.63513 * 353.43765 * 13 5 3 15 15 O 1.21283 * 119.99771 * 4.08895 * 14 13 5 16 16 C 1.50705 * 120.00443 * 184.08236 * 14 13 5 17 17 C 1.52996 * 109.47252 * 180.02562 * 16 14 13 18 18 C 1.50698 * 109.46989 * 179.97438 * 17 16 14 19 19 H 1.07994 * 119.99946 * 0.02562 * 18 17 16 20 20 C 1.37882 * 120.00051 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99831 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00057 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47126 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47044 * 120.00014 * 22 20 18 25 25 H 1.48499 * 109.46883 * 239.99885 * 22 20 18 26 26 H 1.09002 * 109.46891 * 300.00450 * 1 2 3 27 27 H 1.08999 * 109.46960 * 60.00092 * 1 2 3 28 28 H 1.09002 * 109.47238 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.50308 * 65.48498 * 7 5 3 30 30 H 1.09002 * 109.50026 * 305.38386 * 7 5 3 31 31 H 1.08992 * 109.47513 * 60.02341 * 10 8 7 32 32 H 1.08998 * 109.47154 * 180.02562 * 10 8 7 33 33 H 1.09002 * 109.46733 * 300.02425 * 10 8 7 34 34 H 1.08997 * 109.49847 * 58.58587 * 11 8 7 35 35 H 1.08999 * 109.49477 * 178.68349 * 11 8 7 36 36 H 1.08995 * 109.58683 * 294.85334 * 12 11 8 37 37 H 1.08994 * 109.58912 * 174.42218 * 12 11 8 38 38 H 1.09001 * 109.47007 * 300.00566 * 16 14 13 39 39 H 1.09000 * 109.47012 * 60.00338 * 16 14 13 40 40 H 1.09001 * 109.47479 * 300.00157 * 17 16 14 41 41 H 1.09000 * 109.46934 * 60.00171 * 17 16 14 42 42 H 0.97001 * 120.00161 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9847 0.2755 0.1210 7 6 4.0340 2.1708 1.1505 8 6 5.5507 2.3565 1.0634 9 1 5.8894 2.9736 1.8956 10 6 6.2361 0.9902 1.1299 11 6 5.9074 3.0417 -0.2577 12 6 5.4609 2.1554 -1.4249 13 7 4.0316 1.8526 -1.2688 14 6 3.1641 2.0996 -2.2701 15 8 1.9771 1.9144 -2.1035 16 6 3.6688 2.6060 -3.5967 17 6 2.4884 2.8034 -4.5498 18 6 2.9931 3.3104 -5.8762 19 1 4.0500 3.4750 -6.0246 20 6 2.1054 3.5642 -6.9002 21 7 0.8182 3.3634 -6.7196 22 14 2.7310 4.1920 -8.5446 23 1 4.2083 4.3330 -8.4909 24 1 2.3636 3.2296 -9.6141 25 1 2.1184 5.5131 -8.8356 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.7788 1.7041 2.1018 30 1 3.5439 3.1418 1.0781 31 1 5.8975 0.3729 0.2979 32 1 7.3163 1.1222 1.0684 33 1 5.9828 0.5021 2.0711 34 1 5.3996 4.0043 -0.3170 35 1 6.9854 3.1947 -0.3087 36 1 6.0336 1.2281 -1.4194 37 1 5.6223 2.6815 -2.3657 38 1 4.1811 3.5571 -3.4515 39 1 4.3625 1.8810 -4.0223 40 1 1.9757 1.8525 -4.6951 41 1 1.7950 3.5287 -4.1240 42 1 0.1936 3.5423 -7.4399 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362168327.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:24 Heat of formation + Delta-G solvation = -126.847020 kcal Electronic energy + Delta-G solvation = -23735.711556 eV Core-core repulsion = 20294.825185 eV Total energy + Delta-G solvation = -3440.886371 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.02625 -39.11183 -37.80799 -35.94839 -33.68150 -33.49487 -31.96042 -30.68837 -28.09153 -27.53441 -26.04584 -24.69776 -23.92267 -22.04467 -20.64261 -19.73204 -18.14315 -17.71807 -16.87717 -16.38791 -16.08228 -15.63052 -15.33426 -14.99080 -14.89429 -14.42798 -14.36260 -13.79991 -13.67725 -13.15670 -12.91119 -12.71031 -12.31565 -12.18229 -12.13866 -12.01253 -11.73710 -11.37256 -11.16169 -11.08429 -10.95742 -10.91959 -10.71084 -10.56545 -10.40168 -9.97345 -9.91901 -9.59172 -9.12664 -8.93747 -8.52239 -8.31648 -5.95576 -4.00187 2.42284 2.90198 3.16538 3.32834 3.36334 3.40313 3.43335 4.46166 4.49108 4.53237 4.64245 4.83729 4.98312 5.04972 5.12595 5.24725 5.35751 5.39051 5.39451 5.41941 5.46034 5.49970 5.57352 5.70256 5.75934 5.82357 5.84438 5.95590 6.00206 6.16689 6.17182 6.18503 6.52244 6.81026 6.85480 7.58687 7.74733 7.86043 8.07342 8.20511 8.38187 8.65125 9.08109 9.63351 11.15412 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.018323 B = 0.004895 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.748548 B = 5718.449973 C = 6940.712612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.366 6.366 3 C 0.475 3.525 4 O -0.487 6.487 5 C 0.156 3.844 6 H 0.096 0.904 7 C -0.119 4.119 8 C -0.088 4.088 9 H 0.078 0.922 10 C -0.156 4.156 11 C -0.134 4.134 12 C 0.111 3.889 13 N -0.615 5.615 14 C 0.507 3.493 15 O -0.505 6.505 16 C -0.122 4.122 17 C 0.037 3.963 18 C -0.526 4.526 19 H 0.056 0.944 20 C 0.058 3.942 21 N -0.889 5.889 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.023 0.977 41 H 0.024 0.976 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.123 -5.991 17.758 21.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.283 6.283 3 C 0.317 3.683 4 O -0.373 6.373 5 C 0.051 3.949 6 H 0.114 0.886 7 C -0.157 4.157 8 C -0.106 4.106 9 H 0.096 0.904 10 C -0.213 4.213 11 C -0.172 4.172 12 C -0.012 4.012 13 N -0.355 5.355 14 C 0.298 3.702 15 O -0.380 6.380 16 C -0.162 4.162 17 C -0.001 4.001 18 C -0.564 4.564 19 H 0.075 0.925 20 C -0.144 4.144 21 N -0.528 5.528 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.112 0.888 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.041 0.959 41 H 0.042 0.958 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.035 -5.777 17.731 21.177 hybrid contribution 0.093 0.399 -0.932 1.018 sum 10.128 -5.378 16.799 20.340 Atomic orbital electron populations 1.23137 0.76400 1.02806 1.02669 1.86370 1.23443 1.33586 1.84900 1.22670 0.90793 0.81950 0.72844 1.90654 1.66346 1.36111 1.44178 1.20607 0.88487 0.99030 0.86745 0.88577 1.21915 0.96491 1.00905 0.96436 1.21070 0.93982 0.97371 0.98217 0.90360 1.21994 1.00499 0.96645 1.02156 1.22003 1.01606 0.99435 0.94197 1.21804 0.79846 0.99624 0.99905 1.48344 1.08974 1.65573 1.12583 1.21821 0.86057 0.76211 0.86112 1.90702 1.16213 1.50851 1.80228 1.21869 1.02982 1.00723 0.90627 1.18917 0.91215 0.98163 0.91769 1.21229 0.93447 1.44556 0.97193 0.92541 1.25028 0.94844 0.95662 0.98831 1.70016 1.01573 1.48499 1.32669 0.86534 0.78911 0.78517 0.83986 1.19729 1.21021 1.21026 0.92624 0.91262 0.88793 0.90491 0.89961 0.92020 0.92286 0.92506 0.90968 0.90314 0.91021 0.88455 0.90105 0.90013 0.95889 0.95771 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.56 101.05 1.07 1.70 16 2 O -0.37 -6.15 10.56 -41.85 -0.44 -6.59 16 3 C 0.48 8.54 4.50 36.01 0.16 8.70 16 4 O -0.49 -10.48 14.31 -26.94 -0.39 -10.87 16 5 C 0.16 2.18 2.88 -68.75 -0.20 1.98 16 6 H 0.10 1.13 6.69 -51.93 -0.35 0.79 16 7 C -0.12 -1.32 4.83 -26.61 -0.13 -1.45 16 8 C -0.09 -0.73 3.19 -90.57 -0.29 -1.02 16 9 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 10 C -0.16 -1.09 8.43 37.16 0.31 -0.78 16 11 C -0.13 -1.20 5.62 -26.61 -0.15 -1.35 16 12 C 0.11 1.20 5.87 -3.70 -0.02 1.18 16 13 N -0.62 -9.36 2.97 -166.53 -0.49 -9.86 16 14 C 0.51 10.30 7.57 -10.99 -0.08 10.21 16 15 O -0.51 -12.41 11.56 -21.79 -0.25 -12.66 16 16 C -0.12 -2.53 4.02 -27.88 -0.11 -2.65 16 17 C 0.04 1.01 4.26 -27.89 -0.12 0.89 16 18 C -0.53 -15.02 9.11 -34.44 -0.31 -15.33 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -27.74 13.29 55.43 0.74 -27.00 16 22 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 27 H 0.07 1.18 8.13 -51.93 -0.42 0.76 16 28 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 1.09 7.85 -51.93 -0.41 0.69 16 31 H 0.06 0.48 4.98 -51.93 -0.26 0.22 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.64 6.69 -51.93 -0.35 0.29 16 37 H 0.10 1.07 5.96 -51.93 -0.31 0.76 16 38 H 0.08 1.53 7.52 -51.93 -0.39 1.14 16 39 H 0.08 1.52 8.09 -51.93 -0.42 1.10 16 40 H 0.02 0.69 8.10 -51.93 -0.42 0.26 16 41 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 42 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 333.14 15.07 5.02 5.02 Total: -1.00 -36.65 333.14 -7.48 -44.13 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -6.67 Total: -2.63 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 0.03 Total: 3.70 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.24 Total: -36.86 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -1.08 Total: -30.12 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.65 -7.48 -44.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362168327.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.721 kcal (2) G-P(sol) polarization free energy of solvation -36.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds