Wall clock time and date at job start Tue Mar 31 2020 06:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34229 * 117.00025 * 2 1 4 4 O 1.20823 * 119.99953 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99837 * 180.02562 * 3 2 1 6 6 H 1.08994 * 109.47518 * 59.99773 * 5 3 2 7 7 C 1.53004 * 109.46849 * 299.99541 * 5 3 2 8 8 N 1.46501 * 109.47304 * 179.97438 * 5 3 2 9 9 C 1.34769 * 120.00033 * 240.00025 * 8 5 3 10 10 O 1.21280 * 120.00317 * 175.51422 * 9 8 5 11 11 C 1.50706 * 119.99975 * 355.51407 * 9 8 5 12 12 C 1.52998 * 109.47208 * 185.02434 * 11 9 8 13 13 C 1.50696 * 109.47214 * 180.02562 * 12 11 9 14 14 H 1.08003 * 120.00251 * 359.97438 * 13 12 11 15 15 C 1.37880 * 120.00478 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99615 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00482 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46778 * 60.00643 * 17 15 13 19 19 H 1.48500 * 109.47385 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47473 * 300.00611 * 17 15 13 21 21 C 1.46502 * 120.00117 * 59.99163 * 8 5 3 22 22 C 1.53775 * 113.61652 * 224.36169 * 21 8 5 23 23 C 1.53786 * 87.08336 * 220.02098 * 22 21 8 24 24 C 1.53779 * 113.61151 * 126.86401 * 21 8 5 25 25 H 1.09005 * 109.46653 * 60.00079 * 1 2 3 26 26 H 1.08995 * 109.47059 * 300.00438 * 1 2 3 27 27 H 1.08998 * 109.47391 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47232 * 180.02562 * 7 5 3 29 29 H 1.09004 * 109.47078 * 300.00374 * 7 5 3 30 30 H 1.08996 * 109.47335 * 60.00320 * 7 5 3 31 31 H 1.08999 * 109.46871 * 305.02305 * 11 9 8 32 32 H 1.08994 * 109.46950 * 65.02083 * 11 9 8 33 33 H 1.08999 * 109.47099 * 299.99731 * 12 11 9 34 34 H 1.08994 * 109.47452 * 59.99955 * 12 11 9 35 35 H 0.96996 * 120.00215 * 179.97438 * 16 15 13 36 36 H 1.08999 * 112.84654 * 355.66872 * 21 8 5 37 37 H 1.09006 * 113.61523 * 334.56854 * 22 21 8 38 38 H 1.09002 * 113.61648 * 105.46904 * 22 21 8 39 39 H 1.09001 * 113.60756 * 270.88442 * 23 22 21 40 40 H 1.08998 * 113.61541 * 139.97906 * 23 22 21 41 41 H 1.09009 * 113.61319 * 254.52992 * 24 21 8 42 42 H 1.08993 * 113.61887 * 25.34798 * 24 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9558 0.7809 -0.8907 7 6 4.1138 0.5810 1.2484 8 7 3.9818 2.6797 -0.0011 9 6 4.7322 3.1601 -1.0122 10 8 5.0079 4.3404 -1.0552 11 6 5.2286 2.2307 -2.0897 12 6 6.1518 2.9973 -3.0389 13 6 6.6477 2.0681 -4.1167 14 1 6.3361 1.0341 -4.1238 15 6 7.4995 2.5380 -5.0939 16 7 7.8795 3.7971 -5.0851 17 14 8.1148 1.3861 -6.4294 18 1 6.9585 0.8477 -7.1900 19 1 9.0107 2.1301 -7.3508 20 1 8.8646 0.2645 -5.8090 21 6 3.5815 3.5623 1.0975 22 6 3.0838 4.9403 0.6305 23 6 3.8464 5.5339 1.8268 24 6 4.7597 4.2987 1.7566 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 5.2023 0.6384 1.2483 29 1 3.7244 1.0750 2.1386 30 1 3.8048 -0.4642 1.2484 31 1 5.7787 1.4073 -1.6342 32 1 4.3801 1.8358 -2.6482 33 1 5.6018 3.8207 -3.4945 34 1 7.0004 3.3922 -2.4804 35 1 8.4789 4.1276 -5.7723 36 1 2.9169 3.0753 1.8110 37 1 3.4839 5.2444 -0.3368 38 1 2.0025 5.0602 0.6989 39 1 3.2532 5.5871 2.7397 40 1 4.3580 6.4688 1.5981 41 1 5.0316 3.9006 2.7343 42 1 5.6187 4.4260 1.0978 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362180925.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:08 Heat of formation + Delta-G solvation = -97.578905 kcal Electronic energy + Delta-G solvation = -23482.012004 eV Core-core repulsion = 20042.394794 eV Total energy + Delta-G solvation = -3439.617211 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.04867 -39.89514 -37.19901 -36.69595 -35.33439 -33.43924 -31.04884 -30.64391 -27.91870 -26.39631 -25.38423 -24.86765 -24.10420 -21.78656 -21.07835 -19.82436 -18.39751 -17.64628 -17.20271 -16.76618 -16.36332 -15.88329 -15.59046 -14.95198 -14.67405 -14.44748 -13.96776 -13.68179 -13.42721 -13.18357 -13.00053 -12.63049 -12.50546 -12.25611 -12.15587 -12.07496 -11.80605 -11.47396 -11.12086 -10.99386 -10.95171 -10.90842 -10.64288 -10.54201 -10.26350 -10.22484 -9.98163 -9.59842 -9.14329 -8.79875 -8.48092 -8.31908 -5.96548 -4.01161 2.06352 2.34869 3.10871 3.26098 3.34209 3.39253 3.40720 4.45185 4.51015 4.69646 4.78903 4.82288 4.90645 4.97000 4.98919 5.02723 5.20992 5.22813 5.31575 5.38480 5.47969 5.54076 5.64319 5.86497 5.89809 6.05775 6.10033 6.14735 6.18064 6.20163 6.31769 6.44677 6.48667 6.84036 7.01573 7.55903 7.69720 7.72717 7.84199 8.05598 8.36811 8.67473 9.06621 9.62431 11.14291 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015586 B = 0.004952 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.008684 B = 5652.521722 C = 6871.913926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.358 6.358 3 C 0.446 3.554 4 O -0.490 6.490 5 C 0.145 3.855 6 H 0.137 0.863 7 C -0.156 4.156 8 N -0.599 5.599 9 C 0.518 3.482 10 O -0.512 6.512 11 C -0.135 4.135 12 C 0.039 3.961 13 C -0.528 4.528 14 H 0.055 0.945 15 C 0.059 3.941 16 N -0.889 5.889 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.133 3.867 22 C -0.150 4.150 23 C -0.138 4.138 24 C -0.148 4.148 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.025 0.975 34 H 0.023 0.977 35 H 0.261 0.739 36 H 0.096 0.904 37 H 0.115 0.885 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.359 -7.677 15.467 21.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.274 6.274 3 C 0.287 3.713 4 O -0.375 6.375 5 C 0.038 3.962 6 H 0.154 0.846 7 C -0.214 4.214 8 N -0.333 5.333 9 C 0.309 3.691 10 O -0.386 6.386 11 C -0.175 4.175 12 C 0.002 3.998 13 C -0.567 4.567 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.528 5.528 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 C 0.029 3.971 22 C -0.188 4.188 23 C -0.176 4.176 24 C -0.187 4.187 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.119 0.881 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.043 0.957 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.114 0.886 37 H 0.133 0.867 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.324 -6.583 15.323 20.737 hybrid contribution -0.078 -0.657 -0.733 0.987 sum -12.402 -7.240 14.591 20.472 Atomic orbital electron populations 1.23254 0.76436 1.03599 1.02527 1.86513 1.23331 1.33370 1.84201 1.24398 0.92537 0.81633 0.72775 1.90696 1.66712 1.36195 1.43905 1.20686 0.86564 0.85228 1.03732 0.84578 1.22114 1.02976 1.00803 0.95484 1.47992 1.52930 1.08329 1.24050 1.21520 0.76453 0.89805 0.81346 1.90585 1.55904 1.16934 1.75194 1.21991 1.01365 0.98709 0.95462 1.18885 0.93552 0.95033 0.92369 1.21163 1.28586 0.96238 1.10669 0.92676 1.25011 0.96312 0.95037 0.97902 1.69984 1.34295 1.14030 1.34450 0.86658 0.78748 0.80814 0.81749 1.20265 1.21290 1.20232 1.22447 0.96488 0.89627 0.88488 1.23477 0.99344 0.94790 1.01144 1.22597 0.98662 0.98066 0.98242 1.23369 0.98669 0.96384 1.00237 0.91846 0.92065 0.88092 0.90012 0.91911 0.90039 0.90106 0.90323 0.95657 0.95813 0.92882 0.88577 0.86731 0.92344 0.91027 0.91134 0.92158 0.88488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -3.87 10.47 -39.26 -0.41 -4.28 16 3 C 0.45 5.73 7.00 36.00 0.25 5.98 16 4 O -0.49 -7.64 14.83 -18.75 -0.28 -7.92 16 5 C 0.14 1.76 3.03 -69.08 -0.21 1.55 16 6 H 0.14 1.58 5.79 -51.93 -0.30 1.27 16 7 C -0.16 -1.41 9.12 37.16 0.34 -1.07 16 8 N -0.60 -9.15 2.39 -158.98 -0.38 -9.53 16 9 C 0.52 9.95 7.08 -10.99 -0.08 9.87 16 10 O -0.51 -11.51 11.70 5.56 0.07 -11.44 16 11 C -0.14 -2.70 3.96 -27.88 -0.11 -2.81 16 12 C 0.04 1.03 4.28 -27.89 -0.12 0.91 16 13 C -0.53 -14.75 9.11 -34.44 -0.31 -15.07 16 14 H 0.06 1.44 7.74 -52.48 -0.41 1.04 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -27.19 13.29 55.43 0.74 -26.45 16 17 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 21 C 0.13 1.91 2.55 -67.12 -0.17 1.74 16 22 C -0.15 -2.36 7.37 -25.92 -0.19 -2.55 16 23 C -0.14 -1.84 8.08 -25.91 -0.21 -2.05 16 24 C -0.15 -2.08 7.44 -25.92 -0.19 -2.27 16 25 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 26 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 27 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.55 7.24 -51.93 -0.38 0.17 16 30 H 0.08 0.59 8.11 -51.93 -0.42 0.17 16 31 H 0.08 1.42 7.74 -51.93 -0.40 1.02 16 32 H 0.08 1.47 7.83 -51.93 -0.41 1.07 16 33 H 0.03 0.74 8.04 -51.93 -0.42 0.32 16 34 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.10 1.25 6.91 -51.93 -0.36 0.89 16 37 H 0.11 2.21 5.43 -51.93 -0.28 1.92 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 42 H 0.10 1.65 6.48 -51.93 -0.34 1.31 16 LS Contribution 341.45 15.07 5.15 5.15 Total: -1.00 -33.75 341.45 -6.82 -40.57 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -6.65 Total: 0.24 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -0.03 Total: -2.80 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.36 Total: -35.98 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.62 Total: -23.64 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.75 -6.82 -40.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362180925.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.006 kcal (2) G-P(sol) polarization free energy of solvation -33.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds