Wall clock time and date at job start Tue Mar 31 2020 06:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 117.00000 * 2 1 4 4 O 1.20825 * 119.99686 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00054 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.47550 * 300.00672 * 5 3 2 7 7 C 1.52997 * 109.46864 * 60.00674 * 5 3 2 8 8 N 1.46501 * 109.46937 * 180.02562 * 5 3 2 9 9 C 1.34784 * 119.99778 * 120.00689 * 8 5 3 10 10 O 1.21272 * 120.00043 * 175.51339 * 9 8 5 11 11 C 1.50700 * 119.99975 * 355.50997 * 9 8 5 12 12 C 1.52993 * 109.47206 * 185.02250 * 11 9 8 13 13 C 1.50700 * 109.47206 * 180.02562 * 12 11 9 14 14 H 1.08001 * 119.99994 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99886 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00313 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99838 * 179.97438 * 15 13 12 18 18 H 1.48492 * 109.46975 * 90.00172 * 17 15 13 19 19 H 1.48500 * 109.46856 * 209.99928 * 17 15 13 20 20 H 1.48501 * 109.47103 * 330.00016 * 17 15 13 21 21 C 1.46501 * 120.00310 * 300.00266 * 8 5 3 22 22 C 1.53771 * 113.61394 * 224.41444 * 21 8 5 23 23 C 1.53782 * 87.08146 * 220.01974 * 22 21 8 24 24 C 1.53781 * 87.08247 * 25.43349 * 23 22 21 25 25 H 1.09006 * 109.46928 * 59.99977 * 1 2 3 26 26 H 1.09001 * 109.47165 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47372 * 299.99968 * 1 2 3 28 28 H 1.09001 * 109.47210 * 300.00320 * 7 5 3 29 29 H 1.09008 * 109.47478 * 59.99381 * 7 5 3 30 30 H 1.08996 * 109.47732 * 179.97438 * 7 5 3 31 31 H 1.09007 * 109.46997 * 305.02383 * 11 9 8 32 32 H 1.08997 * 109.47053 * 65.01551 * 11 9 8 33 33 H 1.09005 * 109.46826 * 299.99654 * 12 11 9 34 34 H 1.09002 * 109.47409 * 60.00085 * 12 11 9 35 35 H 0.96998 * 120.00270 * 179.97438 * 16 15 13 36 36 H 1.09000 * 112.84955 * 355.72599 * 21 8 5 37 37 H 1.09004 * 113.62104 * 334.56363 * 22 21 8 38 38 H 1.09005 * 113.61864 * 105.47108 * 22 21 8 39 39 H 1.08999 * 113.61496 * 270.88408 * 23 22 21 40 40 H 1.08998 * 113.61541 * 139.98155 * 23 22 21 41 41 H 1.08995 * 113.61515 * 220.02360 * 24 23 22 42 42 H 1.09001 * 113.69078 * 89.12459 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9558 0.7809 0.8907 7 6 4.1138 0.5812 -1.2484 8 7 3.9816 2.6798 0.0011 9 6 4.7321 3.1603 1.0123 10 8 5.1441 4.3002 0.9731 11 6 5.0591 2.2810 2.1917 12 6 5.8091 3.0988 3.2451 13 6 6.1366 2.2193 4.4242 14 1 5.8392 1.1811 4.4226 15 6 6.8160 2.7402 5.5050 16 7 7.1786 4.0044 5.5067 17 14 7.2214 1.6503 6.9670 18 1 8.5461 1.0131 6.7570 19 1 7.2581 2.4731 8.2026 20 1 6.1821 0.5983 7.1033 21 6 3.5813 3.5624 -1.0976 22 6 4.7203 4.4559 -1.6161 23 6 3.6801 5.5831 -1.7268 24 6 2.8878 4.8528 -0.6296 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 3.8047 -0.4640 -1.2484 29 1 3.7243 1.0752 -2.1386 30 1 5.2022 0.6386 -1.2483 31 1 4.1361 1.8928 2.6225 32 1 5.6841 1.4506 1.8635 33 1 6.7321 3.4869 2.8143 34 1 5.1839 3.9292 3.5733 35 1 7.6562 4.3709 6.2673 36 1 3.0419 3.0383 -1.8865 37 1 5.4960 4.6490 -0.8749 38 1 5.1224 4.1369 -2.5777 39 1 3.1685 5.6122 -2.6888 40 1 4.0576 6.5576 -1.4174 41 1 1.8104 4.8540 -0.7948 42 1 3.1613 5.1534 0.3818 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362180926.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:11 Heat of formation + Delta-G solvation = -97.385263 kcal Electronic energy + Delta-G solvation = -23513.516352 eV Core-core repulsion = 20073.907539 eV Total energy + Delta-G solvation = -3439.608814 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.03673 -39.88352 -37.19551 -36.67511 -35.33088 -33.44130 -31.06379 -30.63576 -27.90727 -26.40309 -25.34257 -24.88435 -24.10002 -21.78214 -21.07069 -19.83397 -18.35639 -17.64115 -17.21517 -16.76182 -16.36048 -15.84269 -15.61357 -14.94288 -14.67397 -14.44159 -13.96568 -13.68203 -13.41060 -13.24028 -12.93343 -12.62399 -12.46067 -12.28690 -12.15866 -12.08556 -11.78095 -11.48959 -11.11473 -10.98537 -10.93218 -10.92601 -10.60803 -10.53556 -10.26108 -10.20544 -9.98570 -9.60205 -9.13203 -8.80341 -8.48024 -8.32130 -5.96668 -4.01204 2.08370 2.37206 3.12034 3.23442 3.33086 3.39471 3.41877 4.45307 4.51419 4.70158 4.79829 4.81776 4.92204 4.98135 5.00641 5.04350 5.21086 5.22750 5.32996 5.38506 5.45988 5.53046 5.63563 5.87940 5.89978 6.06178 6.11735 6.13774 6.19740 6.22834 6.37328 6.41461 6.48902 6.84092 7.00445 7.56931 7.70506 7.73119 7.84163 8.05515 8.36812 8.67285 9.06754 9.62490 11.14209 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015324 B = 0.005038 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.728880 B = 5556.329134 C = 6772.552034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.359 6.359 3 C 0.446 3.554 4 O -0.488 6.488 5 C 0.145 3.855 6 H 0.137 0.863 7 C -0.156 4.156 8 N -0.598 5.598 9 C 0.518 3.482 10 O -0.512 6.512 11 C -0.135 4.135 12 C 0.039 3.961 13 C -0.528 4.528 14 H 0.055 0.945 15 C 0.059 3.941 16 N -0.889 5.889 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.132 3.868 22 C -0.157 4.157 23 C -0.139 4.139 24 C -0.137 4.137 25 H 0.060 0.940 26 H 0.100 0.900 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.026 0.974 34 H 0.022 0.978 35 H 0.261 0.739 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.964 -8.093 -16.331 21.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.275 6.275 3 C 0.286 3.714 4 O -0.373 6.373 5 C 0.038 3.962 6 H 0.154 0.846 7 C -0.214 4.214 8 N -0.333 5.333 9 C 0.309 3.691 10 O -0.387 6.387 11 C -0.175 4.175 12 C 0.001 3.999 13 C -0.566 4.566 14 H 0.074 0.926 15 C -0.143 4.143 16 N -0.528 5.528 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 C 0.029 3.971 22 C -0.195 4.195 23 C -0.177 4.177 24 C -0.175 4.175 25 H 0.079 0.921 26 H 0.119 0.881 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.045 0.955 34 H 0.041 0.959 35 H 0.071 0.929 36 H 0.114 0.886 37 H 0.135 0.865 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.879 -7.018 -16.221 20.754 hybrid contribution -0.230 -0.606 0.831 1.054 sum -11.109 -7.624 -15.391 20.455 Atomic orbital electron populations 1.23249 0.76447 1.03576 1.02531 1.86509 1.23329 1.33405 1.84225 1.24393 0.92526 0.81648 0.72834 1.90695 1.66666 1.36166 1.43809 1.20699 0.86660 0.85204 1.03661 0.84591 1.22113 1.02894 1.00836 0.95524 1.47993 1.52987 1.08421 1.23883 1.21503 0.76231 0.88664 0.82669 1.90582 1.51215 1.19136 1.77725 1.21987 1.02016 0.99419 0.94097 1.18893 0.95488 0.94573 0.90917 1.21199 1.36852 0.96499 1.02037 0.92630 1.25010 0.95832 0.94957 0.98470 1.69991 1.39161 1.12715 1.30883 0.86603 0.78726 0.80437 0.82257 1.20640 1.21237 1.19894 1.22454 0.96694 0.89253 0.88711 1.23615 0.98738 0.95762 1.01400 1.22609 0.98123 0.98492 0.98442 1.23197 0.98726 0.95192 1.00413 0.92092 0.88125 0.91815 0.90001 0.91909 0.90090 0.90584 0.89926 0.95530 0.95922 0.92938 0.88647 0.86480 0.92527 0.91051 0.91162 0.91929 0.88835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.36 16 2 O -0.36 -3.91 10.47 -39.26 -0.41 -4.32 16 3 C 0.45 5.75 7.08 36.01 0.25 6.00 16 4 O -0.49 -7.61 14.69 -18.75 -0.28 -7.88 16 5 C 0.14 1.76 3.03 -69.08 -0.21 1.55 16 6 H 0.14 1.58 5.79 -51.93 -0.30 1.27 16 7 C -0.16 -1.39 9.12 37.16 0.34 -1.05 16 8 N -0.60 -9.14 2.39 -158.98 -0.38 -9.52 16 9 C 0.52 9.95 7.08 -10.98 -0.08 9.88 16 10 O -0.51 -11.47 11.70 5.56 0.07 -11.40 16 11 C -0.14 -2.71 3.96 -27.89 -0.11 -2.83 16 12 C 0.04 1.03 4.28 -27.89 -0.12 0.91 16 13 C -0.53 -14.79 9.11 -34.44 -0.31 -15.11 16 14 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -27.25 13.29 55.43 0.74 -26.51 16 17 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 C 0.13 1.90 2.59 -67.12 -0.17 1.73 16 22 C -0.16 -2.27 7.37 -25.92 -0.19 -2.46 16 23 C -0.14 -1.87 8.08 -25.92 -0.21 -2.08 16 24 C -0.14 -2.14 7.10 -25.92 -0.18 -2.32 16 25 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 26 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 28 H 0.08 0.59 8.11 -51.93 -0.42 0.17 16 29 H 0.06 0.54 7.05 -51.92 -0.37 0.18 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.43 7.74 -51.93 -0.40 1.03 16 32 H 0.08 1.47 7.83 -51.93 -0.41 1.06 16 33 H 0.03 0.76 8.05 -51.93 -0.42 0.35 16 34 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 36 H 0.10 1.21 6.96 -51.93 -0.36 0.85 16 37 H 0.12 2.08 5.44 -51.93 -0.28 1.80 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.09 1.77 6.48 -51.93 -0.34 1.43 16 LS Contribution 340.94 15.07 5.14 5.14 Total: -1.00 -33.77 340.94 -6.81 -40.59 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.64 Total: 0.21 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -0.03 Total: -2.81 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.36 Total: -36.03 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.62 Total: -23.60 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.77 -6.81 -40.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362180926.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.800 kcal (2) G-P(sol) polarization free energy of solvation -33.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds