Wall clock time and date at job start Tue Mar 31 2020 06:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 C 1.53000 * 110.29418 * 178.28616 * 6 4 3 8 8 C 1.53002 * 109.46918 * 59.29584 * 7 6 4 9 9 C 1.53002 * 109.47034 * 179.29894 * 7 6 4 10 10 C 1.54620 * 110.32562 * 56.03770 * 6 4 3 11 11 C 1.54948 * 102.83861 * 219.25997 * 10 6 4 12 12 N 1.48118 * 103.25227 * 37.38081 * 11 10 6 13 13 C 1.34776 * 127.03081 * 140.67180 * 12 11 10 14 14 O 1.21684 * 119.99594 * 180.02562 * 13 12 11 15 15 C 1.46376 * 120.00231 * 0.03801 * 13 12 11 16 16 H 1.08001 * 119.99582 * 0.02562 * 15 13 12 17 17 C 1.40041 * 120.00240 * 180.02562 * 15 13 12 18 18 N 1.30670 * 120.00088 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 120.00340 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47126 * 59.99578 * 19 17 15 21 21 H 1.48499 * 109.47416 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46694 * 299.99810 * 19 17 15 23 23 C 1.47485 * 105.93229 * 320.70775 * 12 11 10 24 24 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 25 25 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 27 27 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 28 28 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 29 29 H 1.08996 * 109.47116 * 299.29786 * 7 6 4 30 30 H 1.09003 * 109.46911 * 179.97438 * 8 7 6 31 31 H 1.08997 * 109.47201 * 300.00290 * 8 7 6 32 32 H 1.09001 * 109.46623 * 60.00118 * 8 7 6 33 33 H 1.08995 * 109.47151 * 59.99927 * 9 7 6 34 34 H 1.09003 * 109.47093 * 180.02562 * 9 7 6 35 35 H 1.09004 * 109.46935 * 299.99650 * 9 7 6 36 36 H 1.08992 * 110.74318 * 337.60491 * 10 6 4 37 37 H 1.09004 * 110.73705 * 100.92637 * 10 6 4 38 38 H 1.09000 * 110.66317 * 278.93669 * 11 10 6 39 39 H 1.09002 * 110.79966 * 155.88991 * 11 10 6 40 40 H 0.96996 * 120.00777 * 179.97438 * 18 17 15 41 41 H 1.09003 * 109.90758 * 266.08395 * 23 12 11 42 42 H 1.09001 * 109.91456 * 144.81318 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 6 5.4490 2.8792 0.0467 8 6 5.9633 2.1157 -1.1754 9 6 6.0140 4.3011 0.0347 10 6 3.3787 3.7374 1.2127 11 6 3.1535 5.1498 0.6165 12 7 2.6604 4.8663 -0.7511 13 6 1.6900 5.5235 -1.4166 14 8 1.3847 5.1796 -2.5431 15 6 1.0036 6.6512 -0.7843 16 1 1.2751 6.9567 0.2154 17 6 -0.0051 7.3337 -1.4755 18 7 -0.3332 6.9643 -2.6852 19 14 -0.8807 8.7732 -0.6688 20 1 0.1073 9.8315 -0.3388 21 1 -1.8979 9.3201 -1.6024 22 1 -1.5471 8.3127 0.5758 23 6 3.4481 3.7173 -1.2354 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5137 0.8901 29 1 5.7689 2.3688 0.9551 30 1 7.0522 2.0747 -1.1464 31 1 5.5608 1.1028 -1.1669 32 1 5.6433 2.6262 -2.0838 33 1 5.6475 4.8450 0.9053 34 1 7.1028 4.2597 0.0635 35 1 5.6941 4.8115 -0.8737 36 1 2.4391 3.3133 1.5664 37 1 4.1151 3.7704 2.0158 38 1 4.0903 5.7058 0.5802 39 1 2.4049 5.6969 1.1896 40 1 -1.0321 7.4367 -3.1639 41 1 4.3095 4.0703 -1.8023 42 1 2.8255 3.0776 -1.8610 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373925762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:34 Heat of formation + Delta-G solvation = -125.201627 kcal Electronic energy + Delta-G solvation = -23981.946842 eV Core-core repulsion = 20541.131821 eV Total energy + Delta-G solvation = -3440.815022 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.94903 -38.75898 -36.81676 -36.03301 -33.70419 -32.49001 -31.70633 -29.93184 -28.82107 -26.91630 -26.27912 -24.05331 -23.24585 -21.77403 -21.36233 -19.52865 -18.62621 -17.37654 -16.71173 -16.34697 -16.28215 -15.49985 -15.22092 -14.62947 -14.17397 -14.03871 -13.56887 -13.27606 -13.17538 -12.73260 -12.40859 -12.26705 -12.03065 -11.91757 -11.82336 -11.66364 -11.63003 -11.46987 -11.35059 -11.23800 -11.15065 -10.94705 -10.86516 -10.48388 -10.34985 -10.26557 -10.19594 -10.02621 -9.74796 -8.85893 -7.65859 -7.26083 -6.21110 -4.65661 2.35520 2.80945 3.14796 3.19742 3.21401 4.06437 4.49795 4.52647 4.63878 4.73076 4.87561 4.97739 5.03866 5.08369 5.28363 5.32097 5.38285 5.55617 5.64744 5.70851 5.79542 5.80564 5.84104 5.86685 5.95874 6.03507 6.05491 6.13209 6.15095 6.26575 6.35064 6.38701 6.45329 6.54843 6.62508 6.75393 7.25374 7.42717 7.95996 8.07873 8.38586 9.00462 9.48374 10.56387 10.75172 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.016738 B = 0.005774 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.411080 B = 4848.197629 C = 5780.072753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.062 3.938 3 O -0.343 6.343 4 C 0.480 3.520 5 O -0.513 6.513 6 C -0.064 4.064 7 C -0.064 4.064 8 C -0.164 4.164 9 C -0.153 4.153 10 C -0.122 4.122 11 C 0.113 3.887 12 N -0.639 5.639 13 C 0.577 3.423 14 O -0.574 6.574 15 C -0.538 4.538 16 H 0.070 0.930 17 C 0.087 3.913 18 N -0.768 5.768 19 Si 0.908 3.092 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.268 1.268 23 C 0.130 3.870 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.269 0.731 41 H 0.062 0.938 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.197 -8.492 8.536 14.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 O -0.259 6.259 4 C 0.324 3.676 5 O -0.402 6.402 6 C -0.066 4.066 7 C -0.083 4.083 8 C -0.221 4.221 9 C -0.210 4.210 10 C -0.161 4.161 11 C -0.012 4.012 12 N -0.379 5.379 13 C 0.384 3.616 14 O -0.456 6.456 15 C -0.574 4.574 16 H 0.088 0.912 17 C -0.132 4.132 18 N -0.397 5.397 19 Si 0.733 3.267 20 H -0.192 1.192 21 H -0.205 1.205 22 H -0.192 1.192 23 C 0.006 3.994 24 H 0.090 0.910 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.980 -8.899 7.645 13.651 hybrid contribution -0.380 0.408 0.461 0.723 sum 6.600 -8.491 8.105 13.467 Atomic orbital electron populations 1.21797 0.92613 1.02520 1.04124 1.22990 0.95583 0.80541 1.02041 1.86633 1.24276 1.31698 1.83336 1.23552 0.80531 0.92110 0.71375 1.90546 1.60215 1.43282 1.46144 1.21605 0.95985 0.88893 1.00145 1.20921 0.90343 0.97127 0.99927 1.22149 1.00671 1.02058 0.97214 1.22080 1.00194 0.95572 1.03171 1.22900 1.01327 0.96689 0.95170 1.22299 0.99178 0.94154 0.85554 1.49048 1.39877 1.33098 1.15838 1.18018 0.76666 0.82231 0.84720 1.90618 1.66149 1.69141 1.19720 1.20810 1.19920 1.14559 1.02137 0.91211 1.25715 0.95956 0.97295 0.94276 1.70005 1.24073 1.35598 1.10005 0.86428 0.79302 0.81412 0.79600 1.19235 1.20549 1.19243 1.21617 0.95612 0.89440 0.92772 0.91049 0.90542 0.91422 0.91482 0.91597 0.90660 0.92821 0.90353 0.92662 0.91739 0.92575 0.91571 0.90158 0.90282 0.92304 0.89955 0.91994 0.92010 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 10.29 37.15 0.38 -1.40 16 2 C 0.06 0.84 6.19 37.15 0.23 1.07 16 3 O -0.34 -5.89 9.64 -39.26 -0.38 -6.26 16 4 C 0.48 8.05 6.12 36.00 0.22 8.27 16 5 O -0.51 -8.79 13.44 -18.76 -0.25 -9.04 16 6 C -0.06 -1.02 0.54 -154.29 -0.08 -1.10 16 7 C -0.06 -0.86 1.83 -90.62 -0.17 -1.03 16 8 C -0.16 -2.21 8.66 37.16 0.32 -1.89 16 9 C -0.15 -1.86 7.67 37.16 0.28 -1.57 16 10 C -0.12 -1.81 5.59 -24.85 -0.14 -1.95 16 11 C 0.11 1.97 6.40 -2.12 -0.01 1.95 16 12 N -0.64 -14.43 3.29 -171.41 -0.56 -14.99 16 13 C 0.58 16.43 7.82 -12.99 -0.10 16.33 16 14 O -0.57 -18.76 15.36 5.20 0.08 -18.68 16 15 C -0.54 -14.95 9.04 -35.63 -0.32 -15.27 16 16 H 0.07 1.76 6.44 -52.49 -0.34 1.42 16 17 C 0.09 2.41 5.50 -17.37 -0.10 2.31 16 18 N -0.77 -22.89 11.83 55.55 0.66 -22.23 16 19 Si 0.91 19.85 29.56 -169.99 -5.02 14.83 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 C 0.13 2.56 5.22 -2.98 -0.02 2.54 16 24 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.88 8.13 -51.93 -0.42 0.45 16 28 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.17 5.48 -51.93 -0.28 0.89 16 32 H 0.05 0.77 6.70 -51.93 -0.35 0.42 16 33 H 0.06 0.73 5.52 -51.93 -0.29 0.45 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.91 6.31 -51.93 -0.33 0.59 16 36 H 0.08 1.25 7.51 -51.93 -0.39 0.86 16 37 H 0.08 0.93 7.42 -51.93 -0.39 0.54 16 38 H 0.06 0.92 5.88 -51.93 -0.31 0.61 16 39 H 0.08 1.47 6.64 -51.93 -0.34 1.12 16 40 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 41 H 0.06 1.16 5.02 -51.93 -0.26 0.90 16 42 H 0.06 1.44 7.54 -51.93 -0.39 1.05 16 LS Contribution 329.18 15.07 4.96 4.96 Total: -1.00 -34.46 329.18 -6.20 -40.66 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -6.18 Total: 2.48 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 0.50 Total: 8.28 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.09 Total: -37.22 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -0.55 Total: -33.98 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.46 -6.20 -40.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373925762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.544 kcal (2) G-P(sol) polarization free energy of solvation -34.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds