Wall clock time and date at job start Tue Mar 31 2020 06:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45203 * 109.47234 * 2 1 4 4 C 1.34224 * 116.99952 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00202 * 359.97438 * 4 3 2 6 6 C 1.50707 * 119.99757 * 180.02562 * 4 3 2 7 7 C 1.53000 * 110.38360 * 178.46676 * 6 4 3 8 8 C 1.53000 * 109.47702 * 302.22827 * 7 6 4 9 9 C 1.53005 * 109.47382 * 62.23394 * 7 6 4 10 10 C 1.54276 * 110.34090 * 300.69807 * 6 4 3 11 11 C 1.54396 * 105.05254 * 118.82141 * 10 6 4 12 12 N 1.48314 * 104.53326 * 336.25728 * 11 10 6 13 13 C 1.34780 * 127.76632 * 219.51390 * 12 11 10 14 14 O 1.21683 * 119.99803 * 179.97438 * 13 12 11 15 15 C 1.46369 * 120.00264 * 359.93743 * 13 12 11 16 16 H 1.08003 * 119.99691 * 353.55071 * 15 13 12 17 17 C 1.40050 * 120.00139 * 173.55171 * 15 13 12 18 18 N 1.30666 * 119.99601 * 6.01708 * 17 15 13 19 19 Si 1.86801 * 119.99786 * 186.01668 * 17 15 13 20 20 H 1.48504 * 109.47091 * 94.98826 * 19 17 15 21 21 H 1.48496 * 109.46793 * 214.98536 * 19 17 15 22 22 H 1.48501 * 109.47275 * 334.98551 * 19 17 15 23 23 C 1.48143 * 104.39193 * 39.46333 * 12 11 10 24 24 H 1.09005 * 109.47358 * 299.99896 * 1 2 3 25 25 H 1.09000 * 109.47290 * 59.99544 * 1 2 3 26 26 H 1.09000 * 109.47763 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47017 * 239.99795 * 2 1 3 28 28 H 1.08997 * 109.47218 * 119.99682 * 2 1 3 29 29 H 1.09002 * 109.46794 * 182.22929 * 7 6 4 30 30 H 1.08994 * 109.47095 * 180.02562 * 8 7 6 31 31 H 1.09000 * 109.46820 * 300.00472 * 8 7 6 32 32 H 1.09002 * 109.46913 * 60.00174 * 8 7 6 33 33 H 1.08998 * 109.47031 * 59.99128 * 9 7 6 34 34 H 1.08997 * 109.47149 * 179.97438 * 9 7 6 35 35 H 1.08997 * 109.46697 * 300.00006 * 9 7 6 36 36 H 1.09000 * 110.34476 * 237.73867 * 10 6 4 37 37 H 1.08995 * 110.34603 * 359.89607 * 10 6 4 38 38 H 1.08996 * 110.40752 * 94.96862 * 11 10 6 39 39 H 1.08997 * 110.40588 * 217.40000 * 11 10 6 40 40 H 0.97007 * 119.99589 * 180.02562 * 18 17 15 41 41 H 1.09010 * 110.40472 * 201.69051 * 23 12 11 42 42 H 1.08998 * 110.51086 * 79.30691 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4492 2.8819 0.0376 8 6 5.9012 2.1064 1.2767 9 6 5.9652 2.1796 -1.2200 10 6 3.4426 3.7160 -1.2431 11 6 2.6563 4.9212 -0.6836 12 7 2.2225 4.4879 0.6669 13 6 1.0390 4.7213 1.2681 14 8 0.8316 4.2955 2.3889 15 6 0.0036 5.4877 0.5731 16 1 0.2227 5.9544 -0.3759 17 6 -1.2712 5.6158 1.1388 18 7 -1.5030 5.1529 2.3385 19 14 -2.6399 6.4484 0.1781 20 1 -3.4447 5.4200 -0.5290 21 1 -3.5124 7.2032 1.1131 22 1 -2.0506 7.3838 -0.8133 23 6 3.3830 3.7402 1.2042 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.8487 3.8953 0.0775 30 1 6.9901 2.0673 1.3036 31 1 5.5336 2.6069 2.1725 32 1 5.5017 1.0930 1.2368 33 1 5.6432 2.7320 -2.1027 34 1 7.0542 2.1404 -1.1933 35 1 5.5657 1.1662 -1.2599 36 1 4.2967 4.0590 -1.8270 37 1 2.7927 3.0907 -1.8551 38 1 3.3021 5.7963 -0.6124 39 1 1.7919 5.1357 -1.3119 40 1 -2.3861 5.2413 2.7302 41 1 3.0654 3.0656 1.9994 42 1 4.1437 4.4287 1.5722 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373925765.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:36 Heat of formation + Delta-G solvation = -125.429672 kcal Electronic energy + Delta-G solvation = -24231.623831 eV Core-core repulsion = 20790.798921 eV Total energy + Delta-G solvation = -3440.824910 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.86507 -38.40568 -36.86264 -35.82871 -33.90787 -32.47901 -31.48243 -29.79217 -28.84887 -26.75991 -26.33764 -23.97747 -22.88222 -21.68073 -21.48136 -19.33932 -19.21194 -17.28556 -16.63620 -16.16879 -15.75785 -15.42649 -14.94290 -14.36053 -14.16144 -14.00590 -13.74404 -13.27173 -13.06030 -12.81120 -12.58333 -12.43121 -12.10733 -11.87508 -11.67478 -11.57776 -11.51972 -11.28097 -11.22321 -11.09902 -11.02455 -10.89389 -10.79254 -10.52980 -10.40301 -10.17348 -10.15206 -10.07007 -9.53471 -8.85505 -7.63454 -7.29097 -6.20990 -4.63348 2.48053 2.98527 3.13053 3.20328 3.23576 4.06620 4.44873 4.53528 4.73973 4.77246 4.93805 5.13341 5.15486 5.21633 5.30520 5.43733 5.45247 5.54960 5.70508 5.77820 5.80585 5.83109 5.89735 5.96993 6.04800 6.06398 6.12456 6.19050 6.27023 6.28411 6.33014 6.43303 6.46245 6.52406 6.55838 6.93450 7.22762 7.44132 8.09156 8.12531 8.41072 9.02165 9.51559 10.57679 10.76745 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.019005 B = 0.005976 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.964216 B = 4683.906193 C = 5323.075075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.064 3.936 3 O -0.332 6.332 4 C 0.482 3.518 5 O -0.515 6.515 6 C -0.065 4.065 7 C -0.066 4.066 8 C -0.164 4.164 9 C -0.158 4.158 10 C -0.121 4.121 11 C 0.116 3.884 12 N -0.638 5.638 13 C 0.582 3.418 14 O -0.574 6.574 15 C -0.537 4.537 16 H 0.069 0.931 17 C 0.088 3.912 18 N -0.768 5.768 19 Si 0.906 3.094 20 H -0.273 1.273 21 H -0.279 1.279 22 H -0.264 1.264 23 C 0.129 3.871 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.081 0.919 40 H 0.268 0.732 41 H 0.072 0.928 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.307 -5.575 -8.097 13.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.010 4.010 3 O -0.248 6.248 4 C 0.326 3.674 5 O -0.405 6.405 6 C -0.067 4.067 7 C -0.084 4.084 8 C -0.221 4.221 9 C -0.215 4.215 10 C -0.160 4.160 11 C -0.009 4.009 12 N -0.378 5.378 13 C 0.389 3.611 14 O -0.456 6.456 15 C -0.574 4.574 16 H 0.088 0.912 17 C -0.131 4.131 18 N -0.397 5.397 19 Si 0.731 3.269 20 H -0.198 1.198 21 H -0.205 1.205 22 H -0.188 1.188 23 C 0.004 3.996 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.081 -6.113 -7.230 13.119 hybrid contribution -0.590 0.202 -0.553 0.833 sum 8.491 -5.911 -7.783 12.946 Atomic orbital electron populations 1.21778 0.92574 1.02195 1.04442 1.22957 0.95706 0.80663 1.01634 1.86717 1.23883 1.31337 1.82848 1.23462 0.80680 0.91933 0.71286 1.90491 1.60127 1.43359 1.46505 1.21633 0.95537 0.89510 1.00063 1.20978 0.90624 1.00236 0.96596 1.22137 1.00787 1.02478 0.96710 1.22081 1.00587 1.02344 0.96523 1.22723 1.00205 0.97710 0.95354 1.22022 0.97963 0.94370 0.86562 1.49284 1.14295 1.58012 1.16173 1.17970 0.78100 0.79936 0.85101 1.90611 1.78394 1.56479 1.20148 1.20829 0.95189 1.34348 1.06985 0.91246 1.25698 0.99191 0.93996 0.94250 1.70029 1.21603 1.35098 1.12924 0.86381 0.80853 0.79665 0.80017 1.19806 1.20466 1.18844 1.21854 0.89812 0.94276 0.93685 0.90797 0.91463 0.90801 0.91879 0.91711 0.89992 0.92908 0.92836 0.90175 0.92904 0.92888 0.90674 0.90080 0.90967 0.92988 0.90031 0.92133 0.90924 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 10.29 37.16 0.38 -1.81 16 2 C 0.06 1.00 6.19 37.16 0.23 1.23 16 3 O -0.33 -6.34 9.98 -39.24 -0.39 -6.73 16 4 C 0.48 8.48 5.74 36.01 0.21 8.69 16 5 O -0.51 -9.02 11.29 -18.75 -0.21 -9.23 16 6 C -0.07 -1.04 0.44 -154.26 -0.07 -1.10 16 7 C -0.07 -0.86 1.98 -90.62 -0.18 -1.04 16 8 C -0.16 -2.20 8.70 37.16 0.32 -1.87 16 9 C -0.16 -1.89 8.68 37.16 0.32 -1.57 16 10 C -0.12 -1.78 5.71 -25.33 -0.14 -1.93 16 11 C 0.12 2.04 6.86 -2.31 -0.02 2.02 16 12 N -0.64 -14.44 3.32 -170.82 -0.57 -15.00 16 13 C 0.58 16.54 7.84 -12.99 -0.10 16.44 16 14 O -0.57 -18.66 15.31 5.20 0.08 -18.58 16 15 C -0.54 -14.96 9.02 -35.63 -0.32 -15.28 16 16 H 0.07 1.77 6.60 -52.48 -0.35 1.43 16 17 C 0.09 2.43 5.49 -17.37 -0.10 2.34 16 18 N -0.77 -22.79 11.85 55.55 0.66 -22.13 16 19 Si 0.91 19.89 29.56 -169.99 -5.03 14.86 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.26 -5.59 7.11 56.52 0.40 -5.18 16 23 C 0.13 2.49 5.08 -2.41 -0.01 2.47 16 24 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.87 8.13 -51.93 -0.42 0.44 16 28 H 0.06 0.98 8.13 -51.93 -0.42 0.55 16 29 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.73 7.39 -51.93 -0.38 0.34 16 32 H 0.08 1.22 5.46 -51.93 -0.28 0.94 16 33 H 0.05 0.57 6.50 -51.93 -0.34 0.23 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 1.04 5.74 -51.93 -0.30 0.74 16 36 H 0.08 0.94 6.40 -51.93 -0.33 0.61 16 37 H 0.07 1.09 7.65 -51.93 -0.40 0.69 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.08 1.47 6.77 -51.93 -0.35 1.12 16 40 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 41 H 0.07 1.59 7.59 -51.92 -0.39 1.19 16 42 H 0.06 1.08 7.81 -51.93 -0.41 0.68 16 LS Contribution 334.09 15.07 5.03 5.03 Total: -1.00 -34.23 334.09 -6.36 -40.60 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -6.47 Total: 2.61 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 0.53 Total: 8.58 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.09 Total: -37.14 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -0.52 Total: -34.54 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.03 Total: 14.86 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.23 -6.36 -40.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373925765.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.834 kcal (2) G-P(sol) polarization free energy of solvation -34.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds