Wall clock time and date at job start Tue Mar 31 2020 06:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34219 * 117.00274 * 2 1 4 4 O 1.20833 * 120.00011 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00464 * 179.97438 * 3 2 1 6 6 H 1.09003 * 110.04082 * 56.17502 * 5 3 2 7 7 C 1.54436 * 109.90809 * 295.00315 * 5 3 2 8 8 C 1.54008 * 103.50918 * 239.00253 * 7 5 3 9 9 H 1.08990 * 109.53687 * 93.44113 * 8 7 5 10 10 C 1.54122 * 102.68445 * 337.10873 * 8 7 5 11 11 H 1.08993 * 112.21850 * 160.80326 * 10 8 7 12 12 C 1.53149 * 110.46915 * 286.69689 * 10 8 7 13 13 C 1.52782 * 110.45913 * 308.13322 * 12 10 8 14 14 C 1.53301 * 108.40435 * 59.84187 * 13 12 10 15 15 H 1.09000 * 109.69336 * 56.93667 * 14 13 12 16 16 C 1.52997 * 109.69385 * 177.48731 * 14 13 12 17 17 N 1.44801 * 112.57193 * 215.59156 * 8 7 5 18 18 C 1.46902 * 110.99698 * 296.17332 * 17 8 7 19 19 C 1.50705 * 109.47077 * 296.44082 * 18 17 8 20 20 H 1.07995 * 120.00263 * 0.13196 * 19 18 17 21 21 C 1.37876 * 119.99671 * 180.12915 * 19 18 17 22 22 N 1.31510 * 120.00266 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99759 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47338 * 59.99829 * 23 21 19 25 25 H 1.48500 * 109.47218 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47084 * 299.99891 * 23 21 19 27 27 O 1.43968 * 109.91153 * 177.34579 * 5 3 2 28 28 H 1.09004 * 109.47437 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47486 * 300.00531 * 1 2 3 30 30 H 1.08998 * 109.46701 * 60.00356 * 1 2 3 31 31 H 1.08997 * 110.61145 * 357.50197 * 7 5 3 32 32 H 1.08994 * 110.61738 * 120.33790 * 7 5 3 33 33 H 1.08995 * 109.30639 * 68.43460 * 12 10 8 34 34 H 1.09004 * 109.30571 * 188.03260 * 12 10 8 35 35 H 1.09001 * 109.67635 * 179.56526 * 13 12 10 36 36 H 1.09001 * 109.68002 * 300.06770 * 13 12 10 37 37 H 1.08997 * 109.47324 * 66.90485 * 16 14 13 38 38 H 1.09001 * 109.46923 * 186.90770 * 16 14 13 39 39 H 1.08997 * 109.47100 * 306.90380 * 16 14 13 40 40 H 1.08999 * 109.47066 * 56.43609 * 18 17 8 41 41 H 1.09000 * 109.47082 * 176.44195 * 18 17 8 42 42 H 0.97005 * 120.00231 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9696 0.7249 -0.8498 7 6 4.1231 0.6897 1.3169 8 6 4.9101 1.8640 1.9281 9 1 4.2678 2.4150 2.6149 10 6 5.2208 2.7396 0.6984 11 1 5.4762 3.7625 0.9748 12 6 6.3062 2.0874 -0.1630 13 6 7.5207 1.7267 0.6909 14 6 7.0716 0.7483 1.7824 15 1 6.6113 -0.1271 1.3242 16 6 8.2790 0.3183 2.6179 17 7 6.1042 1.4309 2.6232 18 6 5.7648 0.5894 3.7785 19 6 4.9796 1.4002 4.7771 20 1 4.7534 2.4363 4.5730 21 6 4.5501 0.8192 5.9514 22 7 4.8260 -0.4423 6.2003 23 14 3.5763 1.8240 7.1889 24 1 2.3271 2.3156 6.5540 25 1 3.2365 0.9745 8.3586 26 1 4.3916 2.9810 7.6384 27 8 3.9852 2.6508 -0.0622 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8898 30 1 -0.3633 0.5138 -0.8900 31 1 3.3099 0.3880 1.9769 32 1 4.7834 -0.1532 1.1132 33 1 5.9070 1.1829 -0.6219 34 1 6.6125 2.7829 -0.9444 35 1 8.2813 1.2569 0.0674 36 1 7.9276 2.6279 1.1497 37 1 8.6561 1.1735 3.1786 38 1 7.9796 -0.4675 3.3114 39 1 9.0615 -0.0577 1.9588 40 1 5.1651 -0.2582 3.4469 41 1 6.6806 0.2263 4.2450 42 1 4.5242 -0.8510 7.0266 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374572800.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:27 Heat of formation + Delta-G solvation = -119.145235 kcal Electronic energy + Delta-G solvation = -24140.377832 eV Core-core repulsion = 20699.825436 eV Total energy + Delta-G solvation = -3440.552397 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.00822 -39.81658 -37.10667 -36.16170 -33.60847 -32.21596 -31.34703 -30.53326 -27.88449 -27.02488 -26.20450 -24.20518 -23.14507 -21.66391 -21.12433 -20.25483 -18.49702 -17.68266 -16.93490 -16.54797 -16.33087 -15.65440 -15.57020 -14.98276 -14.49489 -14.19381 -13.94529 -13.72140 -13.27076 -13.06259 -12.74229 -12.49826 -12.26866 -12.15928 -12.00145 -11.75909 -11.58925 -11.40872 -11.21705 -10.86349 -10.83286 -10.77033 -10.73482 -10.51523 -10.43950 -10.14425 -9.96661 -9.61087 -9.36114 -9.12621 -8.44009 -7.28558 -6.06022 -4.07095 2.28211 2.52076 3.32297 3.36130 3.39838 4.06619 4.39478 4.59342 4.79899 4.91606 4.96028 5.04238 5.09164 5.16200 5.18400 5.26804 5.30284 5.36900 5.48146 5.54233 5.65091 5.75756 5.81330 5.96703 6.09313 6.10471 6.12038 6.28447 6.37164 6.39180 6.43023 6.49116 6.67794 6.77999 6.84465 7.29252 7.32706 7.76229 7.84871 8.09003 8.14970 8.52206 8.99580 9.57306 11.04366 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.011759 B = 0.007432 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.582665 B = 3766.657231 C = 5356.434932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.463 3.537 4 O -0.491 6.491 5 C 0.092 3.908 6 H 0.101 0.899 7 C -0.169 4.169 8 C 0.085 3.915 9 H 0.105 0.895 10 C 0.080 3.920 11 H 0.122 0.878 12 C -0.141 4.141 13 C -0.110 4.110 14 C 0.081 3.919 15 H 0.031 0.969 16 C -0.142 4.142 17 N -0.524 5.524 18 C 0.188 3.812 19 C -0.511 4.511 20 H 0.062 0.938 21 C 0.058 3.942 22 N -0.897 5.897 23 Si 0.893 3.107 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.276 1.276 27 O -0.352 6.352 28 H 0.101 0.899 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.048 0.952 40 H -0.006 1.006 41 H 0.043 0.957 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.205 -0.335 -13.232 13.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.304 3.696 4 O -0.377 6.377 5 C 0.032 3.968 6 H 0.119 0.881 7 C -0.209 4.209 8 C -0.025 4.025 9 H 0.123 0.877 10 C 0.023 3.977 11 H 0.139 0.861 12 C -0.179 4.179 13 C -0.148 4.148 14 C -0.027 4.027 15 H 0.049 0.951 16 C -0.199 4.199 17 N -0.248 5.248 18 C 0.064 3.936 19 C -0.549 4.549 20 H 0.080 0.920 21 C -0.143 4.143 22 N -0.537 5.537 23 Si 0.721 3.279 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.201 1.201 27 O -0.271 6.271 28 H 0.120 0.880 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.012 0.988 41 H 0.061 0.939 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.057 0.409 -13.042 13.049 hybrid contribution -1.193 -0.432 0.539 1.378 sum -1.136 -0.023 -12.504 12.555 Atomic orbital electron populations 1.23263 0.76255 1.03656 1.02555 1.86486 1.23418 1.33114 1.84333 1.23644 0.91729 0.81545 0.72638 1.90661 1.66761 1.36293 1.43938 1.22129 0.86995 0.86606 1.01038 0.88133 1.23392 1.02040 1.01205 0.94255 1.22287 0.91956 0.93829 0.94460 0.87699 1.23531 0.82865 1.01176 0.90104 0.86075 1.22078 0.96511 1.00796 0.98519 1.21619 0.96434 1.00252 0.96514 1.21311 0.93765 0.94294 0.93378 0.95100 1.21859 0.96330 1.02046 0.99679 1.60509 1.11021 1.44176 1.09104 1.19873 0.96648 0.90889 0.86202 1.21141 1.33738 0.97602 1.02461 0.92029 1.24941 0.96356 0.94936 0.98096 1.69933 1.46599 1.11534 1.25594 0.86629 0.80503 0.80059 0.80677 1.20301 1.21360 1.20123 1.89181 1.41250 1.23419 1.73203 0.88015 0.91720 0.92047 0.89344 0.89528 0.91927 0.91571 0.91930 0.90831 0.91765 0.91815 0.93340 0.98782 0.93868 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.48 16 2 O -0.36 -5.27 10.56 -39.23 -0.41 -5.69 16 3 C 0.46 7.81 7.08 36.00 0.25 8.07 16 4 O -0.49 -9.61 16.28 -25.38 -0.41 -10.03 16 5 C 0.09 1.45 3.16 -27.13 -0.09 1.36 16 6 H 0.10 1.31 7.32 -51.93 -0.38 0.93 16 7 C -0.17 -2.92 4.58 -25.45 -0.12 -3.04 16 8 C 0.09 1.59 2.60 -67.73 -0.18 1.41 16 9 H 0.11 2.26 6.59 -51.93 -0.34 1.92 16 10 C 0.08 1.27 4.34 -26.07 -0.11 1.15 16 11 H 0.12 1.83 8.14 -51.93 -0.42 1.40 16 12 C -0.14 -1.87 5.19 -26.77 -0.14 -2.01 16 13 C -0.11 -1.47 5.40 -26.69 -0.14 -1.62 16 14 C 0.08 1.33 2.22 -68.47 -0.15 1.18 16 15 H 0.03 0.51 6.39 -51.93 -0.33 0.18 16 16 C -0.14 -2.24 8.48 37.16 0.31 -1.92 16 17 N -0.52 -10.31 4.29 -221.54 -0.95 -11.26 16 18 C 0.19 4.54 4.26 -4.97 -0.02 4.52 16 19 C -0.51 -13.76 8.47 -34.44 -0.29 -14.05 16 20 H 0.06 1.66 6.91 -52.49 -0.36 1.30 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.90 -25.83 13.29 55.43 0.74 -25.09 16 23 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 O -0.35 -6.03 10.45 -54.81 -0.57 -6.61 16 28 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 30 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 31 H 0.09 1.70 7.71 -51.93 -0.40 1.30 16 32 H 0.09 1.43 6.21 -51.93 -0.32 1.10 16 33 H 0.06 0.80 6.21 -51.93 -0.32 0.48 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 1.12 6.53 -51.93 -0.34 0.78 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H -0.01 -0.15 7.22 -51.93 -0.38 -0.52 16 41 H 0.04 1.11 5.65 -51.93 -0.29 0.81 16 42 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 325.83 15.07 4.91 4.91 Total: -1.00 -30.70 325.83 -7.83 -38.53 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.41 Total: 0.74 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 0.30 Total: -1.96 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: -0.21 Total: -36.35 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -1.40 Total: -22.32 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.70 -7.83 -38.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374572800.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.614 kcal (2) G-P(sol) polarization free energy of solvation -30.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds