Wall clock time and date at job start Tue Mar 31 2020 06:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 117.00048 * 2 1 4 4 O 1.20832 * 120.00146 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00147 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.86961 * 55.44854 * 5 3 2 7 7 C 1.54215 * 109.99791 * 294.37534 * 5 3 2 8 8 C 1.55637 * 103.96666 * 241.07537 * 7 5 3 9 9 H 1.08997 * 113.16855 * 143.01908 * 8 7 5 10 10 C 1.54082 * 101.01918 * 22.61801 * 8 7 5 11 11 H 1.09003 * 109.15208 * 77.47549 * 10 8 7 12 12 C 1.51309 * 112.75756 * 198.31280 * 10 8 7 13 13 C 1.52991 * 110.93767 * 50.92772 * 12 10 8 14 14 C 1.53304 * 108.15767 * 302.97110 * 13 12 10 15 15 H 1.09000 * 109.61487 * 302.86966 * 14 13 12 16 16 C 1.53006 * 109.61181 * 182.34684 * 14 13 12 17 17 N 1.46474 * 108.61755 * 62.61135 * 14 13 12 18 18 C 1.46898 * 111.00467 * 171.09291 * 17 14 13 19 19 C 1.50699 * 109.46814 * 60.90598 * 18 17 14 20 20 H 1.08007 * 120.00257 * 5.10803 * 19 18 17 21 21 C 1.37881 * 120.00060 * 185.11167 * 19 18 17 22 22 N 1.31520 * 119.99862 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 119.99901 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.46984 * 90.00007 * 23 21 19 25 25 H 1.48494 * 109.47353 * 209.99882 * 23 21 19 26 26 H 1.48498 * 109.47418 * 330.00153 * 23 21 19 27 27 O 1.43453 * 104.30990 * 320.93113 * 10 8 7 28 28 H 1.08998 * 109.47692 * 300.00667 * 1 2 3 29 29 H 1.09004 * 109.46848 * 60.00440 * 1 2 3 30 30 H 1.09002 * 109.47274 * 180.02562 * 1 2 3 31 31 H 1.08998 * 110.52728 * 122.45944 * 7 5 3 32 32 H 1.09003 * 110.52993 * 359.69365 * 7 5 3 33 33 H 1.08996 * 109.18549 * 171.30882 * 12 10 8 34 34 H 1.08998 * 109.18039 * 290.55756 * 12 10 8 35 35 H 1.09003 * 109.72048 * 62.63951 * 13 12 10 36 36 H 1.09002 * 109.72310 * 183.25498 * 13 12 10 37 37 H 1.08999 * 109.47224 * 294.24886 * 16 14 13 38 38 H 1.09001 * 109.46829 * 54.24773 * 16 14 13 39 39 H 1.08994 * 109.47089 * 174.25019 * 16 14 13 40 40 H 1.09004 * 109.47364 * 180.90257 * 18 17 14 41 41 H 1.09000 * 109.47268 * 300.90723 * 18 17 14 42 42 H 0.97000 * 119.99244 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9670 0.7135 -0.8435 7 6 4.1237 0.7055 1.3209 8 6 4.8765 1.9082 1.9605 9 1 4.7805 1.9461 3.0456 10 6 4.1793 3.0944 1.2670 11 1 3.2076 3.2599 1.7324 12 6 4.9805 4.3752 1.3518 13 6 6.4222 4.1496 0.8921 14 6 7.0307 3.0387 1.7556 15 1 6.9689 3.3175 2.8075 16 6 8.4939 2.8257 1.3622 17 7 6.2761 1.8039 1.5291 18 6 6.9389 0.6575 2.1649 19 6 7.0208 0.8862 3.6522 20 1 6.5484 1.7520 4.0924 21 6 7.6990 -0.0098 4.4512 22 7 7.7709 0.1900 5.7491 23 14 8.5157 -1.5075 3.6901 24 1 9.9112 -1.1709 3.3102 25 1 8.5251 -2.6197 4.6740 26 1 7.7600 -1.9226 2.4811 27 8 3.9848 2.6512 -0.0834 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 4.8132 -0.1150 1.1224 32 1 3.3111 0.3753 1.9681 33 1 4.5164 5.1307 0.7179 34 1 4.9845 4.7275 2.3833 35 1 6.4313 3.8482 -0.1554 36 1 6.9956 5.0684 1.0154 37 1 8.5440 2.4415 0.3434 38 1 9.0273 3.7746 1.4193 39 1 8.9528 2.1093 2.0435 40 1 6.3662 -0.2487 1.9677 41 1 7.9443 0.5477 1.7583 42 1 8.2477 -0.4406 6.3112 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374572801.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:29 Heat of formation + Delta-G solvation = -119.026621 kcal Electronic energy + Delta-G solvation = -24202.435984 eV Core-core repulsion = 20761.888731 eV Total energy + Delta-G solvation = -3440.547253 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.91810 -39.59807 -37.01688 -36.11567 -33.82842 -32.31121 -31.39850 -30.30194 -28.04002 -27.11844 -26.30460 -24.23800 -23.09241 -21.06254 -20.72063 -20.20229 -18.87558 -17.75409 -17.05526 -16.58894 -16.48175 -15.80395 -15.29247 -15.25393 -14.42394 -14.25299 -13.81432 -13.54754 -13.25043 -12.91701 -12.80810 -12.45473 -12.41198 -12.12804 -11.83616 -11.59258 -11.48755 -11.21199 -11.11025 -11.00293 -10.84625 -10.79897 -10.69409 -10.50648 -10.24444 -10.15008 -9.90454 -9.70679 -9.47888 -9.14326 -8.62930 -7.21847 -6.15292 -4.14915 2.21971 2.62837 3.23264 3.32061 3.34431 4.01253 4.34832 4.68815 4.75450 4.81940 5.01363 5.03604 5.08137 5.18755 5.19621 5.37200 5.41588 5.45989 5.47139 5.68275 5.87758 5.96586 6.02507 6.15429 6.22649 6.24519 6.25581 6.31432 6.34091 6.42766 6.53722 6.54203 6.81608 6.92786 6.97863 7.04180 7.10339 7.53401 7.78946 8.00831 8.12786 8.39899 8.86866 9.47843 10.97646 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.016755 B = 0.006195 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.778185 B = 4518.531497 C = 5605.280952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.440 3.560 4 O -0.500 6.500 5 C 0.097 3.903 6 H 0.130 0.870 7 C -0.131 4.131 8 C 0.068 3.932 9 H 0.084 0.916 10 C 0.080 3.920 11 H 0.059 0.941 12 C -0.108 4.108 13 C -0.110 4.110 14 C 0.092 3.908 15 H 0.049 0.951 16 C -0.139 4.139 17 N -0.522 5.522 18 C 0.149 3.851 19 C -0.548 4.548 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.898 5.898 23 Si 0.875 3.125 24 H -0.276 1.276 25 H -0.288 1.288 26 H -0.264 1.264 27 O -0.325 6.325 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.045 0.955 39 H 0.068 0.932 40 H 0.028 0.972 41 H 0.034 0.966 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.364 1.743 -10.735 13.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.283 3.717 4 O -0.387 6.387 5 C 0.037 3.963 6 H 0.147 0.853 7 C -0.169 4.169 8 C -0.042 4.042 9 H 0.101 0.899 10 C 0.022 3.978 11 H 0.077 0.923 12 C -0.146 4.146 13 C -0.148 4.148 14 C -0.016 4.016 15 H 0.067 0.933 16 C -0.197 4.197 17 N -0.246 5.246 18 C 0.023 3.977 19 C -0.587 4.587 20 H 0.091 0.909 21 C -0.129 4.129 22 N -0.536 5.536 23 Si 0.702 3.298 24 H -0.202 1.202 25 H -0.214 1.214 26 H -0.188 1.188 27 O -0.243 6.243 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.118 0.882 31 H 0.124 0.876 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.046 0.954 41 H 0.051 0.949 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.506 2.030 -11.259 14.256 hybrid contribution 0.076 -0.804 0.919 1.223 sum -8.430 1.226 -10.340 13.397 Atomic orbital electron populations 1.23236 0.76766 1.03524 1.02378 1.86537 1.23119 1.33637 1.84157 1.24948 0.93172 0.81438 0.72180 1.90644 1.66998 1.36391 1.44618 1.22282 0.84776 0.86512 1.02696 0.85269 1.23175 1.00267 1.00273 0.93179 1.23040 0.90348 0.92282 0.98518 0.89862 1.22505 0.97554 0.95109 0.82599 0.92326 1.21125 0.96259 0.95354 1.01827 1.21687 0.94266 0.97933 1.00923 1.21336 0.93079 0.89601 0.97602 0.93256 1.21789 0.95325 1.01053 1.01503 1.62063 0.99946 1.04580 1.58044 1.20292 0.94584 0.89436 0.93403 1.21635 1.35156 1.10622 0.91264 0.90943 1.24953 0.95656 0.97679 0.94625 1.69927 1.42546 1.36999 1.04136 0.86851 0.80402 0.83010 0.79490 1.20170 1.21387 1.18817 1.88902 1.85801 1.23246 1.26357 0.92006 0.92097 0.88157 0.87642 0.90669 0.91580 0.90775 0.90979 0.92160 0.92947 0.93554 0.91321 0.95411 0.94850 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.74 10.57 -39.25 -0.41 -5.16 16 3 C 0.44 6.72 7.01 36.00 0.25 6.97 16 4 O -0.50 -8.85 16.21 -25.38 -0.41 -9.26 16 5 C 0.10 1.47 3.99 -27.25 -0.11 1.36 16 6 H 0.13 1.69 8.14 -51.93 -0.42 1.27 16 7 C -0.13 -2.11 6.00 -24.69 -0.15 -2.25 16 8 C 0.07 1.23 2.81 -65.78 -0.18 1.04 16 9 H 0.08 1.71 6.81 -51.93 -0.35 1.35 16 10 C 0.08 1.33 3.03 -27.02 -0.08 1.25 16 11 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 12 C -0.11 -1.64 5.69 -27.59 -0.16 -1.80 16 13 C -0.11 -1.71 5.41 -26.58 -0.14 -1.85 16 14 C 0.09 1.69 2.00 -67.78 -0.14 1.56 16 15 H 0.05 1.03 6.95 -51.93 -0.36 0.67 16 16 C -0.14 -2.43 8.42 37.16 0.31 -2.12 16 17 N -0.52 -10.04 4.23 -218.00 -0.92 -10.97 16 18 C 0.15 3.29 3.42 -4.98 -0.02 3.27 16 19 C -0.55 -14.23 8.01 -34.44 -0.28 -14.50 16 20 H 0.07 2.07 6.35 -52.48 -0.33 1.73 16 21 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 22 N -0.90 -26.35 13.96 55.43 0.77 -25.58 16 23 Si 0.88 20.51 27.37 -169.99 -4.65 15.85 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.26 -5.89 6.69 56.52 0.38 -5.51 16 27 O -0.33 -5.55 10.47 -54.80 -0.57 -6.12 16 28 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 29 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 30 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.11 1.73 6.04 -51.93 -0.31 1.42 16 32 H 0.07 1.15 7.70 -51.93 -0.40 0.75 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 1.36 6.55 -51.93 -0.34 1.02 16 40 H 0.03 0.62 5.57 -51.93 -0.29 0.33 16 41 H 0.03 0.75 5.44 -51.93 -0.28 0.47 16 42 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 324.75 15.07 4.89 4.89 Total: -1.00 -30.31 324.75 -7.50 -37.81 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -6.48 Total: 2.27 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 0.28 Total: -3.74 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: -0.15 Total: -36.54 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -1.40 Total: -20.54 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.65 Total: 15.85 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.31 -7.50 -37.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374572801.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.214 kcal (2) G-P(sol) polarization free energy of solvation -30.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds