Wall clock time and date at job start Tue Mar 31 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34228 * 116.99819 * 2 1 4 4 O 1.20827 * 120.00049 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00022 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.90508 * 56.09720 * 5 3 2 7 7 C 1.55081 * 109.91538 * 294.99923 * 5 3 2 8 8 C 1.53151 * 103.09344 * 242.22832 * 7 5 3 9 9 H 1.09001 * 110.48619 * 90.41918 * 8 7 5 10 10 C 1.55479 * 100.83050 * 333.43573 * 8 7 5 11 11 H 1.08999 * 109.81853 * 287.19199 * 10 8 7 12 12 C 1.51193 * 107.18131 * 169.19843 * 10 8 7 13 13 C 1.53876 * 107.78692 * 61.06184 * 12 10 8 14 14 C 1.52589 * 111.22152 * 305.35293 * 13 12 10 15 15 H 1.09008 * 108.96740 * 293.02401 * 14 13 12 16 16 C 1.53000 * 109.02992 * 174.14288 * 14 13 12 17 17 N 1.45547 * 116.28744 * 217.31762 * 8 7 5 18 18 C 1.46900 * 110.99964 * 300.68599 * 17 8 7 19 19 C 1.50692 * 109.47228 * 295.71542 * 18 17 8 20 20 H 1.08004 * 120.00260 * 4.90829 * 19 18 17 21 21 C 1.37884 * 120.00026 * 184.91121 * 19 18 17 22 22 N 1.31517 * 120.00036 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 119.99835 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47069 * 89.99977 * 23 21 19 25 25 H 1.48495 * 109.47043 * 210.00204 * 23 21 19 26 26 H 1.48503 * 109.46916 * 330.00190 * 23 21 19 27 27 O 1.42381 * 102.60756 * 44.09786 * 10 8 7 28 28 H 1.08994 * 109.47097 * 300.00306 * 1 2 3 29 29 H 1.09004 * 109.46734 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46612 * 60.00626 * 1 2 3 31 31 H 1.08997 * 110.69064 * 0.63349 * 7 5 3 32 32 H 1.09002 * 110.69204 * 123.82963 * 7 5 3 33 33 H 1.09001 * 109.11694 * 301.68956 * 12 10 8 34 34 H 1.08998 * 110.05802 * 180.97205 * 12 10 8 35 35 H 1.09000 * 109.12855 * 184.89949 * 13 12 10 36 36 H 1.09007 * 109.07789 * 65.76775 * 13 12 10 37 37 H 1.08997 * 109.47429 * 291.19064 * 16 14 13 38 38 H 1.08999 * 109.47039 * 51.18944 * 16 14 13 39 39 H 1.09003 * 109.47183 * 171.18582 * 16 14 13 40 40 H 1.09003 * 109.46733 * 55.71606 * 18 17 8 41 41 H 1.09001 * 109.47001 * 175.71176 * 18 17 8 42 42 H 0.96993 * 120.00038 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9672 0.7233 -0.8498 7 6 4.1256 0.6875 1.3224 8 6 4.8353 1.8849 1.9613 9 1 4.1498 2.4352 2.6058 10 6 5.1901 2.7214 0.6997 11 1 6.0013 2.2402 0.1533 12 6 5.6628 4.0749 1.1797 13 6 6.9132 3.8550 2.0492 14 6 6.6347 2.8654 3.1768 15 1 5.9246 3.3121 3.8728 16 6 7.9412 2.5722 3.9171 17 7 6.0759 1.5979 2.6661 18 6 5.8515 0.6431 3.7596 19 6 4.9453 1.2644 4.7910 20 1 4.5097 2.2363 4.6118 21 6 4.6724 0.5922 5.9635 22 7 3.8820 1.1347 6.8638 23 14 5.4253 -1.0890 6.2732 24 1 6.7314 -0.9273 6.9609 25 1 4.5122 -1.8906 7.1269 26 1 5.6308 -1.7855 4.9778 27 8 3.9884 2.6609 -0.0615 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5137 -0.8901 31 1 3.3152 0.3347 1.9603 32 1 4.8336 -0.1156 1.1178 33 1 4.8744 4.5388 1.7725 34 1 5.9090 4.7087 0.3277 35 1 7.2219 4.8082 2.4784 36 1 7.7179 3.4674 1.4244 37 1 8.6071 2.0038 3.2679 38 1 8.4196 3.5112 4.1957 39 1 7.7276 1.9928 4.8154 40 1 5.3862 -0.2597 3.3638 41 1 6.8056 0.3879 4.2207 42 1 3.6897 0.6617 7.6885 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374572802.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:32 Heat of formation + Delta-G solvation = -117.734735 kcal Electronic energy + Delta-G solvation = -24089.849957 eV Core-core repulsion = 20649.358724 eV Total energy + Delta-G solvation = -3440.491233 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.83420 -39.71794 -37.28628 -36.19708 -33.79327 -32.32317 -31.45493 -30.52052 -28.07238 -27.16143 -26.11322 -24.08946 -22.97692 -20.97945 -20.72743 -20.42564 -19.23815 -17.49957 -16.92530 -16.82115 -16.49651 -15.83891 -15.51493 -14.90703 -14.41782 -14.29188 -13.91829 -13.63441 -13.20407 -13.11821 -12.83767 -12.59016 -12.35299 -12.18292 -11.87235 -11.71707 -11.49334 -11.38292 -11.16983 -10.95262 -10.78519 -10.70740 -10.61113 -10.30451 -10.24634 -10.10183 -10.06160 -9.74470 -9.55846 -9.26620 -8.64502 -7.38218 -6.15690 -4.16239 2.27429 2.50183 3.22102 3.30866 3.33224 3.91208 4.33690 4.63323 4.72403 4.81026 4.97775 5.09499 5.16311 5.18283 5.21370 5.33752 5.40810 5.45923 5.50685 5.58807 5.72246 5.91450 6.00448 6.10701 6.12384 6.18117 6.22370 6.30341 6.38417 6.43671 6.48712 6.53781 6.75772 6.87186 6.90499 6.97150 7.04234 7.48755 7.83962 7.92605 7.97282 8.37627 8.86226 9.46380 10.97054 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.013363 B = 0.007151 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.860927 B = 3914.340494 C = 5415.340523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.462 3.538 4 O -0.489 6.489 5 C 0.091 3.909 6 H 0.110 0.890 7 C -0.127 4.127 8 C 0.059 3.941 9 H 0.066 0.934 10 C 0.068 3.932 11 H 0.073 0.927 12 C -0.106 4.106 13 C -0.106 4.106 14 C 0.077 3.923 15 H 0.059 0.941 16 C -0.138 4.138 17 N -0.506 5.506 18 C 0.149 3.851 19 C -0.551 4.551 20 H 0.074 0.926 21 C 0.074 3.926 22 N -0.896 5.896 23 Si 0.875 3.125 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.264 1.264 27 O -0.342 6.342 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.052 0.948 38 H 0.047 0.953 39 H 0.066 0.934 40 H 0.029 0.971 41 H 0.032 0.968 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.742 -1.100 -12.995 13.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.304 3.696 4 O -0.375 6.375 5 C 0.032 3.968 6 H 0.127 0.873 7 C -0.165 4.165 8 C -0.052 4.052 9 H 0.084 0.916 10 C 0.010 3.990 11 H 0.091 0.909 12 C -0.144 4.144 13 C -0.144 4.144 14 C -0.031 4.031 15 H 0.077 0.923 16 C -0.195 4.195 17 N -0.230 5.230 18 C 0.022 3.978 19 C -0.589 4.589 20 H 0.092 0.908 21 C -0.129 4.129 22 N -0.534 5.534 23 Si 0.702 3.298 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.188 1.188 27 O -0.260 6.260 28 H 0.083 0.917 29 H 0.120 0.880 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.115 0.885 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.047 0.953 41 H 0.050 0.950 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.673 -0.871 -13.262 13.395 hybrid contribution -0.585 -0.645 1.100 1.402 sum 1.088 -1.515 -12.162 12.305 Atomic orbital electron populations 1.23270 0.76194 1.03659 1.02608 1.86480 1.23459 1.33034 1.84358 1.23601 0.91695 0.81598 0.72737 1.90670 1.66724 1.36319 1.43780 1.22555 0.87153 0.85738 1.01375 0.87284 1.22562 1.01262 0.99239 0.93402 1.22634 0.92908 0.94755 0.94854 0.91598 1.22612 0.86792 0.98069 0.91486 0.90862 1.21330 0.98345 0.95219 0.99495 1.21630 0.96674 0.99067 0.97035 1.21551 0.96937 0.89971 0.94660 0.92283 1.21760 0.96199 1.00801 1.00780 1.62990 1.22420 1.10782 1.26831 1.20264 0.96493 0.92033 0.88972 1.21615 1.29355 1.06067 1.01886 0.90774 1.24955 0.94522 0.97569 0.95833 1.69925 1.36364 1.38495 1.08635 0.86850 0.79358 0.84760 0.78791 1.20137 1.21330 1.18814 1.88821 1.41489 1.23691 1.72038 0.91679 0.88004 0.92031 0.89388 0.88546 0.91313 0.91425 0.91280 0.91656 0.92930 0.93391 0.91457 0.95334 0.94994 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.56 101.05 1.07 1.47 16 2 O -0.36 -5.09 10.57 -39.25 -0.41 -5.50 16 3 C 0.46 7.65 7.09 36.00 0.26 7.91 16 4 O -0.49 -9.57 16.28 -25.34 -0.41 -9.99 16 5 C 0.09 1.40 3.95 -26.79 -0.11 1.29 16 6 H 0.11 1.32 8.14 -51.93 -0.42 0.89 16 7 C -0.13 -2.12 5.38 -25.55 -0.14 -2.25 16 8 C 0.06 1.10 1.74 -67.05 -0.12 0.98 16 9 H 0.07 1.48 6.85 -51.93 -0.36 1.13 16 10 C 0.07 1.11 2.93 -26.32 -0.08 1.04 16 11 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 12 C -0.11 -1.60 5.99 -27.19 -0.16 -1.76 16 13 C -0.11 -1.54 5.26 -26.49 -0.14 -1.68 16 14 C 0.08 1.40 1.98 -67.52 -0.13 1.26 16 15 H 0.06 1.27 6.36 -51.92 -0.33 0.94 16 16 C -0.14 -2.32 8.63 37.16 0.32 -2.00 16 17 N -0.51 -9.73 4.76 -219.19 -1.04 -10.78 16 18 C 0.15 3.33 3.57 -4.98 -0.02 3.31 16 19 C -0.55 -14.57 8.19 -34.44 -0.28 -14.85 16 20 H 0.07 2.18 5.90 -52.48 -0.31 1.87 16 21 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 22 N -0.90 -26.67 13.96 55.43 0.77 -25.90 16 23 Si 0.88 20.68 27.37 -169.99 -4.65 16.03 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.26 -5.95 6.69 56.52 0.38 -5.57 16 27 O -0.34 -5.96 10.74 -54.69 -0.59 -6.55 16 28 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 29 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 31 H 0.09 1.59 7.72 -51.93 -0.40 1.19 16 32 H 0.10 1.46 8.05 -51.93 -0.42 1.04 16 33 H 0.07 1.13 8.12 -51.93 -0.42 0.71 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.88 8.13 -51.93 -0.42 0.45 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 39 H 0.07 1.30 6.77 -51.93 -0.35 0.95 16 40 H 0.03 0.65 6.61 -51.93 -0.34 0.30 16 41 H 0.03 0.72 5.74 -51.93 -0.30 0.42 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 327.10 15.07 4.93 4.93 Total: -1.00 -31.28 327.10 -7.65 -38.93 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.61 Total: 2.15 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 0.37 Total: -3.33 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: -0.27 Total: -36.68 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -1.41 Total: -22.04 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.65 Total: 16.03 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.28 -7.65 -38.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374572802.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.807 kcal (2) G-P(sol) polarization free energy of solvation -31.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds