Wall clock time and date at job start Tue Mar 31 2020 06:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99985 * 2 1 4 4 O 1.20826 * 120.00319 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00394 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.89880 * 55.70040 * 5 3 2 7 7 C 1.55069 * 109.91529 * 294.60622 * 5 3 2 8 8 C 1.53586 * 102.88479 * 242.27544 * 7 5 3 9 9 H 1.09001 * 110.56713 * 90.31172 * 8 7 5 10 10 C 1.55466 * 100.82727 * 333.29902 * 8 7 5 11 11 H 1.09002 * 109.82680 * 287.46709 * 10 8 7 12 12 C 1.51690 * 107.10777 * 168.26518 * 10 8 7 13 13 C 1.52134 * 107.86312 * 61.44894 * 12 10 8 14 14 C 1.52593 * 111.56156 * 305.77093 * 13 12 10 15 15 H 1.08997 * 108.97371 * 173.58939 * 14 13 12 16 16 C 1.53004 * 109.03152 * 292.47484 * 14 13 12 17 17 N 1.45539 * 116.95435 * 217.83559 * 8 7 5 18 18 C 1.46896 * 111.00162 * 301.04769 * 17 8 7 19 19 C 1.50697 * 109.47477 * 190.00139 * 18 17 8 20 20 H 1.07997 * 120.00257 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99845 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00500 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99623 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47123 * 89.99882 * 23 21 19 25 25 H 1.48503 * 109.46889 * 209.99796 * 23 21 19 26 26 H 1.48502 * 109.47436 * 329.99928 * 23 21 19 27 27 O 1.42388 * 102.60499 * 44.20168 * 10 8 7 28 28 H 1.09002 * 109.47379 * 299.99940 * 1 2 3 29 29 H 1.09001 * 109.46782 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47085 * 60.00143 * 1 2 3 31 31 H 1.08996 * 110.69417 * 0.63686 * 7 5 3 32 32 H 1.09006 * 110.69243 * 123.83433 * 7 5 3 33 33 H 1.09000 * 109.95378 * 181.71776 * 12 10 8 34 34 H 1.08996 * 109.95222 * 302.98595 * 12 10 8 35 35 H 1.09008 * 109.37193 * 184.94751 * 13 12 10 36 36 H 1.09000 * 108.54346 * 66.04741 * 13 12 10 37 37 H 1.08997 * 109.46810 * 182.20167 * 16 14 13 38 38 H 1.08992 * 109.47498 * 302.21198 * 16 14 13 39 39 H 1.09009 * 109.46566 * 62.21186 * 16 14 13 40 40 H 1.09004 * 109.47034 * 310.00285 * 18 17 8 41 41 H 1.09002 * 109.47145 * 69.99381 * 18 17 8 42 42 H 0.96996 * 120.00257 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9674 0.7175 -0.8458 7 6 4.1251 0.6967 1.3265 8 6 4.8340 1.9053 1.9554 9 1 4.1480 2.4622 2.5936 10 6 5.1897 2.7286 0.6855 11 1 5.9992 2.2402 0.1430 12 6 5.6387 4.0997 1.1539 13 6 6.8744 3.9149 2.0218 14 6 6.6198 2.9273 3.1569 15 1 7.5573 2.7395 3.6802 16 6 5.6165 3.5403 4.1359 17 7 6.0830 1.6463 2.6562 18 6 5.8817 0.6940 3.7564 19 6 7.1253 0.6372 4.6056 20 1 7.9800 1.2472 4.3531 21 6 7.1723 -0.1943 5.7045 22 7 6.1318 -0.9375 6.0118 23 14 8.7142 -0.2653 6.7567 24 1 8.6225 0.7483 7.8382 25 1 8.8428 -1.6181 7.3557 26 1 9.9029 0.0175 5.9127 27 8 3.9883 2.6602 -0.0757 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 3.3146 0.3482 1.9665 32 1 4.8334 -0.1077 1.1276 33 1 5.8716 4.7285 0.2946 34 1 4.8551 4.5630 1.7535 35 1 7.1670 4.8764 2.4439 36 1 7.6842 3.5392 1.3964 37 1 5.4591 2.8568 4.9703 38 1 6.0059 4.4870 4.5102 39 1 4.6695 3.7136 3.6246 40 1 5.0389 1.0176 4.3674 41 1 5.6752 -0.2951 3.3476 42 1 6.1647 -1.5222 6.7850 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374572803.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:34 Heat of formation + Delta-G solvation = -114.573176 kcal Electronic energy + Delta-G solvation = -23906.165394 eV Core-core repulsion = 20465.811257 eV Total energy + Delta-G solvation = -3440.354137 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.95300 -39.87583 -37.40317 -36.28831 -33.78191 -32.47168 -31.07328 -30.26542 -28.02585 -27.11578 -26.07514 -24.24313 -23.19639 -21.57706 -20.99803 -20.45659 -18.71263 -17.42353 -17.03251 -16.55785 -16.17110 -15.84283 -15.30691 -15.09306 -14.87036 -14.43776 -14.08752 -13.55254 -13.24629 -13.07175 -12.72549 -12.55006 -12.36304 -12.15379 -11.99812 -11.81571 -11.50609 -11.37675 -11.17778 -10.88661 -10.85096 -10.79221 -10.69910 -10.52554 -10.31090 -10.15859 -9.88891 -9.65986 -9.40274 -8.99559 -8.51861 -7.32872 -6.09439 -4.11232 2.16871 2.42046 3.27297 3.34456 3.37461 3.86437 4.36932 4.62398 4.65964 4.76228 4.93574 5.00844 5.08058 5.17662 5.26736 5.33133 5.35852 5.40957 5.46677 5.54770 5.64393 5.87874 5.93110 6.05799 6.07637 6.15026 6.16559 6.22770 6.26537 6.31264 6.48200 6.52686 6.76440 6.87638 6.97725 7.29523 7.37970 7.69689 7.74147 7.96231 8.11918 8.47229 8.95736 9.53570 11.01646 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.018606 B = 0.005247 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.559346 B = 5334.627704 C = 6443.605420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.462 3.538 4 O -0.491 6.491 5 C 0.090 3.910 6 H 0.111 0.889 7 C -0.128 4.128 8 C 0.042 3.958 9 H 0.056 0.944 10 C 0.072 3.928 11 H 0.079 0.921 12 C -0.104 4.104 13 C -0.110 4.110 14 C 0.080 3.920 15 H 0.101 0.899 16 C -0.183 4.183 17 N -0.506 5.506 18 C 0.189 3.811 19 C -0.515 4.515 20 H 0.066 0.934 21 C 0.059 3.941 22 N -0.895 5.895 23 Si 0.894 3.106 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.273 1.273 27 O -0.344 6.344 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.047 0.953 39 H 0.045 0.955 40 H -0.005 1.005 41 H 0.034 0.966 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.435 4.250 -10.829 12.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.304 3.696 4 O -0.377 6.377 5 C 0.031 3.969 6 H 0.129 0.871 7 C -0.166 4.166 8 C -0.068 4.068 9 H 0.073 0.927 10 C 0.014 3.986 11 H 0.097 0.903 12 C -0.142 4.142 13 C -0.148 4.148 14 C -0.028 4.028 15 H 0.119 0.881 16 C -0.242 4.242 17 N -0.231 5.231 18 C 0.064 3.936 19 C -0.553 4.553 20 H 0.084 0.916 21 C -0.143 4.143 22 N -0.534 5.534 23 Si 0.722 3.278 24 H -0.208 1.208 25 H -0.213 1.213 26 H -0.197 1.197 27 O -0.263 6.263 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.122 0.878 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.013 0.987 41 H 0.052 0.948 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.486 4.363 -11.148 13.168 hybrid contribution -0.102 0.069 1.380 1.386 sum -5.588 4.431 -9.768 12.094 Atomic orbital electron populations 1.23275 0.76186 1.03745 1.02533 1.86500 1.23450 1.32987 1.84274 1.23652 0.91729 0.81577 0.72672 1.90664 1.66771 1.36329 1.43952 1.22570 0.87009 0.85891 1.01428 0.87106 1.22652 1.01029 0.99433 0.93464 1.22965 0.93360 0.94746 0.95779 0.92660 1.22772 0.86864 0.97838 0.91089 0.90314 1.21107 0.98727 0.94972 0.99388 1.21351 0.97019 0.99271 0.97175 1.21712 0.99778 0.88155 0.93182 0.88091 1.22451 0.99608 1.00977 1.01157 1.62906 1.21617 1.09927 1.28628 1.19770 0.96573 0.90520 0.86706 1.21217 0.99936 1.24354 1.09778 0.91626 1.24966 0.96318 0.95411 0.97599 1.69950 1.29527 1.26404 1.27555 0.86554 0.83439 0.77302 0.80484 1.20752 1.21250 1.19737 1.88827 1.41651 1.23774 1.72019 0.91822 0.87911 0.91974 0.89952 0.87850 0.91448 0.91504 0.91290 0.91578 0.90877 0.93358 0.93572 0.98683 0.94831 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.36 -4.72 10.57 -39.25 -0.41 -5.14 16 3 C 0.46 7.13 7.09 36.01 0.26 7.38 16 4 O -0.49 -8.93 16.28 -25.34 -0.41 -9.35 16 5 C 0.09 1.33 3.94 -26.79 -0.11 1.22 16 6 H 0.11 1.32 8.14 -51.93 -0.42 0.89 16 7 C -0.13 -2.05 5.73 -25.33 -0.15 -2.20 16 8 C 0.04 0.74 1.96 -66.83 -0.13 0.61 16 9 H 0.06 1.08 5.77 -51.93 -0.30 0.78 16 10 C 0.07 1.15 2.95 -26.08 -0.08 1.07 16 11 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 12 C -0.10 -1.51 5.67 -27.84 -0.16 -1.67 16 13 C -0.11 -1.61 5.35 -27.38 -0.15 -1.75 16 14 C 0.08 1.46 2.51 -67.51 -0.17 1.29 16 15 H 0.10 2.02 5.77 -51.93 -0.30 1.72 16 16 C -0.18 -3.31 8.17 37.16 0.30 -3.00 16 17 N -0.51 -10.12 4.82 -218.93 -1.05 -11.17 16 18 C 0.19 4.60 3.96 -4.98 -0.02 4.58 16 19 C -0.51 -13.51 8.24 -34.44 -0.28 -13.79 16 20 H 0.07 1.69 5.90 -52.49 -0.31 1.38 16 21 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 22 N -0.90 -25.64 13.29 55.43 0.74 -24.90 16 23 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 27 O -0.34 -5.73 10.72 -54.68 -0.59 -6.32 16 28 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 31 H 0.08 1.35 7.72 -51.93 -0.40 0.95 16 32 H 0.10 1.62 8.10 -51.93 -0.42 1.20 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 1.01 7.00 -51.93 -0.36 0.64 16 35 H 0.07 0.88 8.13 -51.92 -0.42 0.46 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 1.54 6.48 -51.93 -0.34 1.21 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.81 4.99 -51.92 -0.26 0.55 16 40 H 0.00 -0.12 6.87 -51.93 -0.36 -0.48 16 41 H 0.03 0.88 7.79 -51.93 -0.40 0.48 16 42 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 326.06 15.07 4.91 4.91 Total: -1.00 -30.44 326.06 -7.94 -38.37 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -6.39 Total: 1.10 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 0.29 Total: -3.32 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: -0.32 Total: -36.08 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -1.41 Total: -20.80 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.44 -7.94 -38.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374572803.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.200 kcal (2) G-P(sol) polarization free energy of solvation -30.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds