Wall clock time and date at job start Tue Mar 31 2020 06:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.51473 * 2 1 4 4 C 1.53275 * 109.50980 * 120.09843 * 2 1 3 5 5 N 1.47166 * 108.55844 * 172.87193 * 4 2 1 6 6 C 1.34783 * 121.07396 * 128.83584 * 5 4 2 7 7 O 1.21276 * 120.00286 * 179.97438 * 6 5 4 8 8 C 1.50708 * 119.99896 * 359.97438 * 6 5 4 9 9 C 1.52995 * 109.47351 * 179.97438 * 8 6 5 10 10 C 1.50696 * 109.47196 * 180.02562 * 9 8 6 11 11 H 1.07995 * 119.99821 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99765 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00220 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99764 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47201 * 59.99793 * 14 12 10 16 16 H 1.48503 * 109.47218 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.47205 * 299.99827 * 14 12 10 18 18 C 1.47315 * 117.85752 * 308.81907 * 5 4 2 19 19 C 1.52446 * 108.43718 * 49.26286 * 18 5 4 20 20 C 1.54607 * 110.11636 * 72.56499 * 19 18 5 21 21 C 1.55069 * 100.87528 * 151.51324 * 20 19 18 22 22 O 1.43716 * 105.20272 * 324.23410 * 21 20 19 23 23 C 1.43422 * 109.93693 * 24.30320 * 22 21 20 24 24 O 1.41992 * 111.27111 * 309.82251 * 19 18 5 25 25 H 1.09004 * 109.47189 * 299.90232 * 1 2 3 26 26 H 1.08998 * 109.47179 * 59.90367 * 1 2 3 27 27 H 1.08998 * 109.47440 * 179.90278 * 1 2 3 28 28 H 1.09006 * 109.62233 * 53.15421 * 4 2 1 29 29 H 1.09004 * 109.62626 * 292.59746 * 4 2 1 30 30 H 1.08999 * 109.47132 * 300.00595 * 8 6 5 31 31 H 1.09001 * 109.46950 * 59.99860 * 8 6 5 32 32 H 1.09001 * 109.46786 * 300.00542 * 9 8 6 33 33 H 1.09006 * 109.46565 * 59.99968 * 9 8 6 34 34 H 0.96993 * 119.99838 * 180.02562 * 13 12 10 35 35 H 1.09002 * 109.68079 * 169.01265 * 18 5 4 36 36 H 1.08995 * 109.67631 * 289.51847 * 18 5 4 37 37 H 1.09001 * 111.14065 * 269.41778 * 20 19 18 38 38 H 1.08996 * 111.13888 * 33.61051 * 20 19 18 39 39 H 1.08997 * 110.29608 * 205.30191 * 21 20 19 40 40 H 1.08999 * 110.37727 * 83.20540 * 21 20 19 41 41 H 1.08996 * 109.86520 * 238.35457 * 23 22 21 42 42 H 1.08998 * 109.85986 * 117.26895 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0419 -0.7245 1.2499 5 7 3.5032 -0.8638 1.1451 6 6 4.3129 -0.4770 2.1508 7 8 5.5145 -0.6011 2.0439 8 6 3.7249 0.1098 3.4083 9 6 4.8513 0.4616 4.3821 10 6 4.2633 1.0478 5.6397 11 1 3.1932 1.1587 5.7347 12 6 5.0915 1.4434 6.6686 13 7 6.3946 1.3087 6.5526 14 14 4.3627 2.1707 8.2272 15 1 3.4547 1.1795 8.8584 16 1 5.4560 2.5132 9.1719 17 1 3.5978 3.3982 7.8900 18 6 4.0526 -1.4401 -0.0944 19 6 3.4226 -0.7202 -1.2813 20 6 3.9967 0.7103 -1.4013 21 6 3.8632 0.9521 -2.9272 22 8 4.1281 -0.3228 -3.5354 23 6 3.8496 -1.3767 -2.6033 24 8 2.0080 -0.6776 -1.1663 25 1 -0.3634 0.5123 0.8909 26 1 -0.3633 0.5153 -0.8891 27 1 -0.3634 -1.0276 -0.0017 28 1 1.5838 -1.7116 1.3143 29 1 1.7923 -0.1436 2.1379 30 1 3.1634 1.0107 3.1608 31 1 3.0585 -0.6178 3.8717 32 1 5.4123 -0.4396 4.6294 33 1 5.5180 1.1890 3.9189 34 1 6.9771 1.5867 7.2766 35 1 5.1339 -1.3043 -0.1145 36 1 3.8153 -2.5029 -0.1416 37 1 3.3965 1.4235 -0.8363 38 1 5.0402 0.7426 -1.0881 39 1 4.5951 1.6886 -3.2588 40 1 2.8547 1.2854 -3.1719 41 1 4.7449 -1.9781 -2.4459 42 1 3.0426 -2.0032 -2.9831 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408238945.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:41 Heat of formation + Delta-G solvation = -126.917843 kcal Electronic energy + Delta-G solvation = -23468.228213 eV Core-core repulsion = 20027.338771 eV Total energy + Delta-G solvation = -3440.889442 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.08504 -39.08081 -37.77516 -34.65481 -33.78700 -33.32305 -31.14374 -30.81553 -29.61520 -26.96921 -26.41345 -24.80941 -23.15033 -22.05361 -21.57024 -20.07027 -18.73899 -17.53849 -17.19764 -16.53894 -16.14527 -15.75594 -15.53067 -15.23006 -15.02629 -14.63102 -14.43266 -13.92753 -13.66724 -13.39655 -13.20570 -12.71732 -12.60803 -12.33173 -12.20709 -12.09995 -11.94438 -11.72969 -11.59364 -11.16650 -11.09209 -10.95204 -10.75014 -10.64831 -10.14658 -10.02701 -9.78155 -9.68676 -9.26537 -9.08229 -8.47090 -8.35346 -6.00101 -4.05103 2.98949 3.08091 3.20103 3.31241 3.36416 3.37763 3.62126 4.15107 4.39176 4.43732 4.56705 4.63145 4.75732 4.88698 4.99119 5.04768 5.12393 5.14813 5.28725 5.34821 5.38698 5.48134 5.49565 5.52228 5.58216 5.60460 5.72054 5.77363 5.81163 5.91919 6.09317 6.11722 6.48173 6.66598 6.79831 6.97355 7.58090 7.68689 7.79487 8.01667 8.32440 8.60282 9.02697 9.58715 11.10785 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.025866 B = 0.003898 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.247423 B = 7181.008805 C = 7697.538115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.069 3.931 3 H 0.068 0.932 4 C 0.080 3.920 5 N -0.628 5.628 6 C 0.515 3.485 7 O -0.529 6.529 8 C -0.128 4.128 9 C 0.038 3.962 10 C -0.529 4.529 11 H 0.055 0.945 12 C 0.059 3.941 13 N -0.889 5.889 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.096 3.904 19 C 0.075 3.925 20 C -0.180 4.180 21 C 0.058 3.942 22 O -0.381 6.381 23 C 0.071 3.929 24 O -0.360 6.360 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.024 0.976 33 H 0.023 0.977 34 H 0.262 0.738 35 H 0.104 0.896 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.088 0.912 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.398 -3.453 -17.377 21.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.011 3.989 3 H 0.086 0.914 4 C -0.044 4.044 5 N -0.364 5.364 6 C 0.306 3.694 7 O -0.404 6.404 8 C -0.167 4.167 9 C 0.000 4.000 10 C -0.567 4.567 11 H 0.073 0.927 12 C -0.143 4.143 13 N -0.528 5.528 14 Si 0.721 3.279 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.027 4.027 19 C 0.034 3.966 20 C -0.218 4.218 21 C -0.019 4.019 22 O -0.300 6.300 23 C -0.006 4.006 24 O -0.279 6.279 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.121 0.879 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.122 0.878 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.106 0.894 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.586 -3.595 -17.642 20.886 hybrid contribution -0.377 0.541 1.348 1.501 sum -10.963 -3.054 -16.294 19.875 Atomic orbital electron populations 1.21727 0.91926 1.03316 1.03010 1.22614 0.95505 0.95879 0.84880 0.91405 1.22439 0.80636 1.01884 0.99407 1.48391 1.06585 1.64707 1.16758 1.21648 0.86768 0.76418 0.84582 1.90667 1.15010 1.54167 1.80528 1.21897 1.02414 1.00071 0.92364 1.18904 0.91776 0.97599 0.91700 1.21155 0.93024 1.41882 1.00676 0.92667 1.25017 0.94803 0.95846 0.98604 1.69983 1.02659 1.47231 1.32879 0.86651 0.78660 0.79575 0.83035 1.20218 1.21242 1.20238 1.21914 1.00654 0.97119 0.83043 1.22708 0.82520 0.95426 0.95961 1.23789 1.03442 0.97224 0.97342 1.23358 1.01023 0.86188 0.91287 1.88442 1.88818 1.14663 1.38123 1.22958 1.00859 0.90529 0.86258 1.87803 1.19104 1.77569 1.43453 0.90376 0.91510 0.91488 0.90697 0.87947 0.90297 0.90160 0.95804 0.95846 0.92839 0.87807 0.90983 0.89250 0.88976 0.89550 0.91912 0.89410 0.89944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.57 37.16 0.36 -0.73 16 2 C 0.07 0.70 3.18 -26.59 -0.08 0.61 16 3 H 0.07 0.71 6.17 -51.93 -0.32 0.39 16 4 C 0.08 0.90 5.81 -3.54 -0.02 0.88 16 5 N -0.63 -9.13 2.93 -172.65 -0.51 -9.63 16 6 C 0.52 9.82 7.71 -10.98 -0.08 9.74 16 7 O -0.53 -12.23 15.47 5.56 0.09 -12.15 16 8 C -0.13 -2.53 4.01 -27.88 -0.11 -2.65 16 9 C 0.04 1.00 4.26 -27.89 -0.12 0.88 16 10 C -0.53 -14.75 9.11 -34.44 -0.31 -15.07 16 11 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 14 Si 0.89 21.36 29.54 -169.99 -5.02 16.33 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 18 C 0.10 1.24 5.17 -3.88 -0.02 1.22 16 19 C 0.07 0.85 0.85 -89.72 -0.08 0.78 16 20 C -0.18 -2.06 6.01 -24.79 -0.15 -2.21 16 21 C 0.06 0.60 7.79 38.25 0.30 0.90 16 22 O -0.38 -4.62 11.37 -35.23 -0.40 -5.02 16 23 C 0.07 0.75 7.19 37.50 0.27 1.02 16 24 O -0.36 -4.10 9.88 -35.23 -0.35 -4.45 16 25 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.10 1.10 6.05 -51.93 -0.31 0.79 16 30 H 0.08 1.41 7.67 -51.93 -0.40 1.02 16 31 H 0.08 1.46 8.01 -51.93 -0.42 1.04 16 32 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 33 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.10 1.49 6.88 -51.93 -0.36 1.13 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 1.02 6.02 -51.93 -0.31 0.71 16 38 H 0.09 1.15 7.84 -51.93 -0.41 0.75 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.81 7.78 -51.93 -0.40 0.40 16 42 H 0.08 0.81 8.06 -51.93 -0.42 0.39 16 LS Contribution 333.64 15.07 5.03 5.03 Total: -1.00 -33.66 333.64 -7.27 -40.93 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -6.69 Total: -1.62 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -0.15 Total: -3.02 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.23 Total: -36.03 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.66 Total: -21.62 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.66 -7.27 -40.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408238945.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.989 kcal (2) G-P(sol) polarization free energy of solvation -33.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds