Wall clock time and date at job start Tue Mar 31 2020 06:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.55362 * 2 1 4 4 C 1.53282 * 109.51681 * 239.87178 * 2 1 3 5 5 N 1.47169 * 108.55595 * 186.98424 * 4 2 1 6 6 C 1.34776 * 121.08527 * 231.29208 * 5 4 2 7 7 O 1.21272 * 120.00332 * 180.02562 * 6 5 4 8 8 C 1.50699 * 119.99960 * 0.02562 * 6 5 4 9 9 C 1.53001 * 109.47368 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.47368 * 179.97438 * 9 8 6 11 11 H 1.08004 * 119.99668 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00167 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00253 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 119.99872 * 359.97438 * 12 10 9 15 15 H 1.48506 * 109.46929 * 89.99912 * 14 12 10 16 16 H 1.48497 * 109.47270 * 209.99882 * 14 12 10 17 17 H 1.48499 * 109.47291 * 330.00421 * 14 12 10 18 18 C 1.47339 * 117.83004 * 51.31796 * 5 4 2 19 19 C 1.52290 * 108.61953 * 310.84239 * 18 5 4 20 20 C 1.54466 * 110.45562 * 286.14076 * 19 18 5 21 21 C 1.54538 * 102.16998 * 209.16081 * 20 19 18 22 22 O 1.43304 * 107.60851 * 20.65009 * 21 20 19 23 23 C 1.43810 * 110.01501 * 1.59894 * 22 21 20 24 24 O 1.42269 * 111.36304 * 49.71685 * 19 18 5 25 25 H 1.09007 * 109.47398 * 180.12708 * 1 2 3 26 26 H 1.08998 * 109.47894 * 300.13053 * 1 2 3 27 27 H 1.09003 * 109.47131 * 60.13335 * 1 2 3 28 28 H 1.09002 * 109.62064 * 67.26114 * 4 2 1 29 29 H 1.09004 * 109.77554 * 306.79879 * 4 2 1 30 30 H 1.09000 * 109.47282 * 299.99987 * 8 6 5 31 31 H 1.08998 * 109.47514 * 59.99572 * 8 6 5 32 32 H 1.09000 * 109.46843 * 300.00175 * 9 8 6 33 33 H 1.08998 * 109.46630 * 59.99791 * 9 8 6 34 34 H 0.97001 * 120.00710 * 179.97438 * 13 12 10 35 35 H 1.09002 * 109.64319 * 70.63591 * 18 5 4 36 36 H 1.09002 * 109.64022 * 191.05250 * 18 5 4 37 37 H 1.09004 * 110.85801 * 327.32339 * 20 19 18 38 38 H 1.08997 * 110.86584 * 90.98925 * 20 19 18 39 39 H 1.08999 * 109.82316 * 261.13042 * 21 20 19 40 40 H 1.08995 * 109.82644 * 140.17224 * 21 20 19 41 41 H 1.08994 * 110.32052 * 217.56691 * 23 22 21 42 42 H 1.09003 * 110.31809 * 95.37141 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0420 -0.7252 -1.2496 5 7 3.5037 -0.8613 -1.1461 6 6 4.3118 -0.4718 -2.1519 7 8 5.5138 -0.5933 -2.0459 8 6 3.7218 0.1147 -3.4085 9 6 4.8468 0.4698 -4.3827 10 6 4.2567 1.0558 -5.6395 11 1 3.1863 1.1637 -5.7341 12 6 5.0834 1.4541 -6.6686 13 7 4.5684 1.9650 -7.7655 14 14 6.9348 1.2681 -6.5046 15 1 7.3462 -0.0623 -7.0206 16 1 7.6106 2.3334 -7.2879 17 1 7.3195 1.3850 -5.0751 18 6 4.0549 -1.4377 0.0928 19 6 3.4251 -0.7256 1.2826 20 6 4.0122 0.6952 1.4340 21 6 3.8953 0.9355 2.9560 22 8 3.7836 -0.3449 3.5898 23 6 3.8566 -1.3899 2.6044 24 8 2.0080 -0.6771 1.1669 25 1 -0.3634 -1.0277 0.0023 26 1 -0.3635 0.5158 0.8887 27 1 -0.3633 0.5118 -0.8912 28 1 1.7902 -0.1459 -2.1379 29 1 1.5861 -1.7131 -1.3155 30 1 3.0567 -0.6139 -3.8721 31 1 3.1585 1.0142 -3.1599 32 1 5.5122 1.1983 -3.9194 33 1 5.4096 -0.4299 -4.6312 34 1 5.1499 2.2456 -8.4894 35 1 3.8219 -2.5016 0.1373 36 1 5.1358 -1.2982 0.1125 37 1 5.0545 0.7203 1.1160 38 1 3.4183 1.4217 0.8795 39 1 3.0083 1.5321 3.1690 40 1 4.7847 1.4510 3.3183 41 1 3.1744 -2.2003 2.8610 42 1 4.8772 -1.7641 2.5245 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408238947.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:43 Heat of formation + Delta-G solvation = -124.308004 kcal Electronic energy + Delta-G solvation = -23521.223336 eV Core-core repulsion = 20080.447065 eV Total energy + Delta-G solvation = -3440.776271 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.10587 -39.19647 -37.81416 -34.73220 -33.85406 -33.34476 -31.38769 -30.96274 -29.69282 -27.19993 -26.58279 -24.93376 -23.06683 -22.15918 -21.28569 -20.09094 -18.81041 -17.62380 -17.40457 -16.54239 -16.44482 -15.92213 -15.59252 -15.22778 -15.05825 -14.84181 -14.17034 -14.02384 -13.75494 -13.50316 -13.19073 -12.81166 -12.68136 -12.57789 -12.38052 -12.24905 -11.96011 -11.72581 -11.62326 -11.40718 -11.24301 -11.02416 -10.79805 -10.22039 -10.18924 -10.10573 -9.84142 -9.78118 -9.33796 -9.22217 -8.57804 -8.53411 -6.07757 -4.06996 2.88514 2.94238 3.11500 3.34044 3.40927 3.51002 3.62379 4.10369 4.35492 4.46430 4.52942 4.57552 4.69468 4.84620 4.89551 4.98672 5.06721 5.09647 5.23573 5.27704 5.32429 5.41092 5.44707 5.49699 5.53341 5.56987 5.62595 5.72213 5.76649 5.90243 5.93668 5.97874 6.37145 6.58812 6.67095 6.92386 7.28902 7.35726 7.44871 7.73155 8.39640 8.49864 8.94405 9.55122 11.04981 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.024754 B = 0.004187 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.855350 B = 6686.083929 C = 7287.945189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.070 3.930 3 H 0.067 0.933 4 C 0.078 3.922 5 N -0.626 5.626 6 C 0.516 3.484 7 O -0.536 6.536 8 C -0.120 4.120 9 C 0.002 3.998 10 C -0.526 4.526 11 H 0.073 0.927 12 C 0.070 3.930 13 N -0.902 5.902 14 Si 0.877 3.123 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.262 1.262 18 C 0.096 3.904 19 C 0.074 3.926 20 C -0.179 4.179 21 C 0.058 3.942 22 O -0.379 6.379 23 C 0.072 3.928 24 O -0.356 6.356 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.023 0.977 33 H 0.019 0.981 34 H 0.264 0.736 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.831 -5.224 20.435 22.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.012 3.988 3 H 0.085 0.915 4 C -0.045 4.045 5 N -0.362 5.362 6 C 0.307 3.693 7 O -0.411 6.411 8 C -0.160 4.160 9 C -0.036 4.036 10 C -0.564 4.564 11 H 0.091 0.909 12 C -0.131 4.131 13 N -0.541 5.541 14 Si 0.704 3.296 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.186 1.186 18 C -0.028 4.028 19 C 0.033 3.967 20 C -0.217 4.217 21 C -0.018 4.018 22 O -0.298 6.298 23 C -0.005 4.005 24 O -0.276 6.276 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.122 0.878 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.041 0.959 33 H 0.037 0.963 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.121 0.879 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.115 0.885 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.254 -5.313 20.635 22.207 hybrid contribution 1.033 0.117 -0.556 1.179 sum -5.220 -5.197 20.079 21.388 Atomic orbital electron populations 1.21725 0.91805 1.03363 1.03094 1.22604 0.95614 0.95811 0.84769 0.91471 1.22483 0.80345 1.02088 0.99599 1.48341 1.06724 1.64388 1.16716 1.21607 0.86735 0.76361 0.84645 1.90647 1.15048 1.54704 1.80735 1.21701 1.01721 1.00727 0.91857 1.19378 0.93342 0.97077 0.93784 1.21082 0.95347 1.41325 0.98657 0.90932 1.24956 0.98820 0.94357 0.94978 1.69901 1.35581 1.42519 1.06104 0.86807 0.85871 0.77964 0.78978 1.20197 1.21378 1.18602 1.21852 1.00555 0.97303 0.83045 1.22819 0.82678 0.95196 0.96026 1.23631 1.03229 0.97737 0.97116 1.23096 1.01486 0.86013 0.91235 1.88435 1.95008 1.14485 1.31900 1.23203 1.01171 0.91306 0.84822 1.87863 1.18819 1.77577 1.43292 0.91463 0.91447 0.90302 0.87834 0.90518 0.89517 0.89628 0.95854 0.96254 0.92657 0.90826 0.87885 0.89178 0.89328 0.91152 0.91231 0.88484 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.57 37.15 0.36 -0.73 16 2 C 0.07 0.69 3.21 -26.59 -0.09 0.61 16 3 H 0.07 0.69 6.28 -51.93 -0.33 0.36 16 4 C 0.08 0.85 5.81 -3.53 -0.02 0.83 16 5 N -0.63 -8.60 2.96 -172.73 -0.51 -9.11 16 6 C 0.52 9.23 7.71 -10.99 -0.08 9.15 16 7 O -0.54 -11.52 15.47 5.56 0.09 -11.43 16 8 C -0.12 -2.27 4.01 -27.88 -0.11 -2.38 16 9 C 0.00 0.05 3.33 -27.88 -0.09 -0.04 16 10 C -0.53 -14.78 9.66 -34.44 -0.33 -15.11 16 11 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 12 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 13 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 14 Si 0.88 22.32 27.47 -169.99 -4.67 17.65 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 17 H -0.26 -6.63 6.54 56.52 0.37 -6.26 16 18 C 0.10 1.15 5.28 -3.95 -0.02 1.13 16 19 C 0.07 0.80 0.87 -89.64 -0.08 0.72 16 20 C -0.18 -1.94 5.97 -25.15 -0.15 -2.09 16 21 C 0.06 0.59 7.81 37.96 0.30 0.89 16 22 O -0.38 -4.45 11.36 -35.23 -0.40 -4.85 16 23 C 0.07 0.71 6.99 37.73 0.26 0.97 16 24 O -0.36 -4.01 9.95 -35.23 -0.35 -4.36 16 25 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.10 1.08 6.05 -51.93 -0.31 0.76 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.09 1.52 8.01 -51.93 -0.42 1.10 16 31 H 0.09 1.48 7.67 -51.93 -0.40 1.08 16 32 H 0.02 0.60 7.15 -51.93 -0.37 0.22 16 33 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.10 1.36 6.85 -51.93 -0.36 1.00 16 37 H 0.09 1.02 7.81 -51.93 -0.41 0.62 16 38 H 0.09 0.97 6.13 -51.93 -0.32 0.65 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.08 0.67 7.98 -51.93 -0.41 0.26 16 LS Contribution 330.55 15.07 4.98 4.98 Total: -1.00 -33.76 330.55 -6.93 -40.69 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -6.68 Total: -2.63 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -0.16 Total: -4.10 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.26 Total: -35.95 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.67 Total: -20.64 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.67 Total: 17.65 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.76 -6.93 -40.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408238947.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.622 kcal (2) G-P(sol) polarization free energy of solvation -33.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds