Wall clock time and date at job start Tue Mar 31 2020 06:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 109.50818 * 2 1 4 4 C 1.53276 * 109.51166 * 239.90019 * 2 1 3 5 5 N 1.47169 * 108.48476 * 187.18194 * 4 2 1 6 6 C 1.34773 * 121.05050 * 231.09132 * 5 4 2 7 7 O 1.21283 * 119.99940 * 180.02562 * 6 5 4 8 8 C 1.50694 * 119.99986 * 359.97438 * 6 5 4 9 9 C 1.53002 * 109.47253 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.47396 * 179.97438 * 9 8 6 11 11 H 1.08002 * 119.99500 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00104 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00048 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99873 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47187 * 90.00407 * 14 12 10 16 16 H 1.48499 * 109.47115 * 210.00014 * 14 12 10 17 17 H 1.48504 * 109.47343 * 330.00333 * 14 12 10 18 18 C 1.47270 * 117.90049 * 51.10828 * 5 4 2 19 19 C 1.52643 * 108.44690 * 310.48040 * 18 5 4 20 20 C 1.53983 * 110.14867 * 173.03953 * 19 18 5 21 21 C 1.54608 * 103.87854 * 118.23065 * 20 19 18 22 22 O 1.44472 * 104.82437 * 23.88855 * 21 20 19 23 23 C 1.44551 * 105.36530 * 319.84664 * 22 21 20 24 24 O 1.42205 * 110.89915 * 50.50854 * 19 18 5 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 300.00406 * 1 2 3 27 27 H 1.09000 * 109.47050 * 60.00234 * 1 2 3 28 28 H 1.09002 * 109.63825 * 306.87638 * 4 2 1 29 29 H 1.09001 * 109.63841 * 67.28515 * 4 2 1 30 30 H 1.09001 * 109.47598 * 300.00279 * 8 6 5 31 31 H 1.08999 * 109.47445 * 60.00509 * 8 6 5 32 32 H 1.08997 * 109.47418 * 300.00366 * 9 8 6 33 33 H 1.09001 * 109.46853 * 60.00312 * 9 8 6 34 34 H 0.97003 * 120.00505 * 180.02562 * 13 12 10 35 35 H 1.09000 * 109.64697 * 70.16862 * 18 5 4 36 36 H 1.09003 * 109.64124 * 190.58575 * 18 5 4 37 37 H 1.08994 * 110.54224 * 236.82910 * 20 19 18 38 38 H 1.09003 * 110.54263 * 359.48908 * 20 19 18 39 39 H 1.09001 * 110.36948 * 142.73107 * 21 20 19 40 40 H 1.09001 * 110.36829 * 264.94701 * 21 20 19 41 41 H 1.09000 * 110.39142 * 281.17984 * 23 22 21 42 42 H 1.09004 * 110.39281 * 158.79316 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 6 2.0420 -0.7245 -1.2499 5 7 3.5031 -0.8641 -1.1428 6 6 4.3139 -0.4785 -2.1479 7 8 5.5155 -0.6026 -2.0395 8 6 3.7274 0.1059 -3.4070 9 6 4.8549 0.4567 -4.3799 10 6 4.2684 1.0405 -5.6393 11 1 3.1984 1.1507 -5.7360 12 6 5.0978 1.4349 -6.6677 13 7 6.4007 1.3012 -6.5497 14 14 4.3707 2.1592 -8.2285 15 1 4.2592 3.6331 -8.0851 16 1 5.2521 1.8393 -9.3800 17 1 3.0227 1.5812 -8.4613 18 6 4.0514 -1.4388 0.0974 19 6 3.4246 -0.7126 1.2847 20 6 3.8364 -1.3956 2.6018 21 6 4.6147 -0.2969 3.3618 22 8 4.1266 0.9478 2.8142 23 6 3.9914 0.7145 1.3940 24 8 2.0079 -0.6762 1.1667 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.5837 -1.7114 -1.3148 29 1 1.7907 -0.1448 -2.1381 30 1 3.0620 -0.6228 -3.8702 31 1 3.1652 1.0069 -3.1619 32 1 5.5207 1.1852 -3.9171 33 1 5.4168 -0.4446 -4.6251 34 1 6.9843 1.5790 -7.2730 35 1 3.8090 -2.5004 0.1478 36 1 5.1335 -1.3090 0.1143 37 1 2.9553 -1.7003 3.1664 38 1 4.4780 -2.2541 2.4032 39 1 4.4021 -0.3509 4.4295 40 1 5.6852 -0.3979 3.1832 41 1 4.9635 0.7756 0.9048 42 1 3.2987 1.4329 0.9554 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408238951.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:49 Heat of formation + Delta-G solvation = -126.733478 kcal Electronic energy + Delta-G solvation = -23474.665393 eV Core-core repulsion = 20033.783946 eV Total energy + Delta-G solvation = -3440.881448 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.04538 -39.04091 -37.75161 -34.63561 -33.81484 -33.36205 -31.11222 -30.85738 -29.22022 -26.93352 -26.37118 -24.87235 -23.56325 -21.69757 -21.54120 -20.10894 -18.74243 -17.42017 -17.17817 -16.43952 -16.11632 -15.89261 -15.69750 -15.14892 -15.05675 -14.48233 -14.34844 -13.89586 -13.71916 -13.29641 -13.09057 -12.74803 -12.51143 -12.31986 -12.19407 -12.08495 -11.80622 -11.75388 -11.51151 -11.31275 -11.15015 -10.95951 -10.72996 -10.61668 -10.23610 -10.01929 -9.80604 -9.67544 -9.25166 -9.06597 -8.45385 -8.34503 -5.99229 -4.04054 3.00475 3.08313 3.30242 3.31225 3.37610 3.39883 3.71604 4.25725 4.42178 4.45495 4.46971 4.68233 4.81006 4.82210 4.88818 5.09396 5.13554 5.20357 5.28505 5.35888 5.39703 5.43941 5.51531 5.55751 5.58471 5.60039 5.69183 5.74790 5.80358 5.94999 6.10968 6.13097 6.48005 6.49951 6.81030 7.03147 7.58550 7.70136 7.80670 8.02677 8.33457 8.60621 9.03920 9.59819 11.11710 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.024867 B = 0.003962 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.703343 B = 7065.849681 C = 7630.929345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.067 3.933 3 H 0.068 0.932 4 C 0.080 3.920 5 N -0.630 5.630 6 C 0.515 3.485 7 O -0.530 6.530 8 C -0.128 4.128 9 C 0.037 3.963 10 C -0.528 4.528 11 H 0.056 0.944 12 C 0.059 3.941 13 N -0.889 5.889 14 Si 0.893 3.107 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.094 3.906 19 C 0.078 3.922 20 C -0.140 4.140 21 C 0.045 3.955 22 O -0.370 6.370 23 C 0.024 3.976 24 O -0.359 6.359 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.023 0.977 33 H 0.024 0.976 34 H 0.261 0.739 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.498 -5.360 18.300 21.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.009 3.991 3 H 0.085 0.915 4 C -0.044 4.044 5 N -0.367 5.367 6 C 0.305 3.695 7 O -0.404 6.404 8 C -0.168 4.168 9 C 0.000 4.000 10 C -0.566 4.566 11 H 0.074 0.926 12 C -0.143 4.143 13 N -0.528 5.528 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.029 4.029 19 C 0.037 3.963 20 C -0.178 4.178 21 C -0.032 4.032 22 O -0.288 6.288 23 C -0.053 4.053 24 O -0.278 6.278 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.121 0.879 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.811 -5.279 18.473 21.572 hybrid contribution -0.204 0.258 -1.210 1.253 sum -10.015 -5.022 17.263 20.580 Atomic orbital electron populations 1.21717 0.91904 1.03244 1.03049 1.22615 0.95652 0.95896 0.84976 0.91453 1.22442 0.80549 1.01910 0.99455 1.48427 1.06668 1.64763 1.16795 1.21662 0.86761 0.76392 0.84641 1.90667 1.15023 1.54170 1.80576 1.21899 1.02437 1.00138 0.92315 1.18912 0.91776 0.97614 0.91727 1.21197 0.93066 1.41810 1.00569 0.92601 1.25016 0.94805 0.95855 0.98623 1.69992 1.02632 1.47266 1.32879 0.86590 0.78984 0.79426 0.82949 1.20641 1.21197 1.19865 1.22082 1.00615 0.97206 0.83034 1.22703 0.82567 0.95470 0.95599 1.22892 1.01610 0.98990 0.94293 1.23467 0.97760 0.83071 0.98916 1.89164 1.86757 1.32987 1.19930 1.24014 1.01557 0.96560 0.83136 1.87872 1.19208 1.77486 1.43241 0.91544 0.91450 0.90400 0.90713 0.87906 0.90131 0.90229 0.95819 0.95803 0.92908 0.90919 0.87930 0.88916 0.89072 0.88718 0.91829 0.90813 0.88523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.57 37.16 0.36 -0.79 16 2 C 0.07 0.71 3.16 -26.58 -0.08 0.63 16 3 H 0.07 0.75 6.14 -51.93 -0.32 0.44 16 4 C 0.08 0.92 5.81 -3.53 -0.02 0.90 16 5 N -0.63 -9.27 2.91 -172.57 -0.50 -9.77 16 6 C 0.51 9.87 7.71 -10.99 -0.08 9.79 16 7 O -0.53 -12.26 15.46 5.56 0.09 -12.17 16 8 C -0.13 -2.56 4.01 -27.88 -0.11 -2.67 16 9 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 10 C -0.53 -14.79 9.11 -34.44 -0.31 -15.10 16 11 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 14 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 18 C 0.09 1.22 5.03 -3.80 -0.02 1.20 16 19 C 0.08 0.91 1.04 -89.80 -0.09 0.81 16 20 C -0.14 -1.28 6.53 -25.37 -0.17 -1.45 16 21 C 0.04 0.43 7.65 38.00 0.29 0.72 16 22 O -0.37 -4.87 11.65 -35.23 -0.41 -5.28 16 23 C 0.02 0.32 6.62 37.65 0.25 0.56 16 24 O -0.36 -4.30 9.81 -35.23 -0.35 -4.64 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.10 1.12 6.07 -51.93 -0.31 0.81 16 30 H 0.08 1.47 8.01 -51.93 -0.42 1.06 16 31 H 0.08 1.44 7.67 -51.93 -0.40 1.04 16 32 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 33 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.10 1.46 6.85 -51.93 -0.36 1.11 16 37 H 0.09 0.82 7.99 -51.93 -0.41 0.40 16 38 H 0.09 0.68 7.71 -51.93 -0.40 0.28 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 1.03 7.68 -51.93 -0.40 0.64 16 42 H 0.10 1.27 5.94 -51.93 -0.31 0.96 16 LS Contribution 333.25 15.07 5.02 5.02 Total: -1.00 -34.15 333.25 -7.32 -41.47 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -6.67 Total: -1.62 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -0.21 Total: -2.94 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.23 Total: -36.27 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.67 Total: -22.10 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.15 -7.32 -41.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408238951.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.263 kcal (2) G-P(sol) polarization free energy of solvation -34.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds