Wall clock time and date at job start Tue Mar 31 2020 06:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34224 * 117.00021 * 2 1 4 4 O 1.20821 * 120.00273 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99883 * 180.02562 * 3 2 1 6 6 H 1.08993 * 110.67467 * 61.77701 * 5 3 2 7 7 C 1.54894 * 110.75430 * 298.54147 * 5 3 2 8 8 C 1.54258 * 104.19805 * 203.55863 * 7 5 3 9 9 C 1.53877 * 106.59822 * 23.61442 * 8 7 5 10 10 H 1.08996 * 110.03660 * 240.66503 * 9 8 7 11 11 C 1.50706 * 110.03573 * 119.28189 * 9 8 7 12 12 O 1.21282 * 120.00087 * 241.45799 * 11 9 8 13 13 N 1.34776 * 119.99436 * 61.45086 * 11 9 8 14 14 C 1.46498 * 120.00303 * 0.02562 * 13 11 9 15 15 C 1.46506 * 119.99384 * 180.02562 * 13 11 9 16 16 H 1.09000 * 109.47212 * 0.02562 * 15 13 11 17 17 C 1.53002 * 109.47035 * 120.00492 * 15 13 11 18 18 C 1.50701 * 109.46956 * 240.00306 * 15 13 11 19 19 H 1.08001 * 120.00213 * 359.97438 * 18 15 13 20 20 C 1.37880 * 119.99755 * 180.02562 * 18 15 13 21 21 N 1.31508 * 119.99915 * 359.97438 * 20 18 15 22 22 Si 1.86800 * 119.99825 * 179.97438 * 20 18 15 23 23 H 1.48501 * 109.47104 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46986 * 119.99876 * 22 20 18 25 25 H 1.48494 * 109.47457 * 240.00237 * 22 20 18 26 26 C 1.54263 * 106.59642 * 359.97438 * 9 8 7 27 27 H 1.09003 * 109.47271 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46968 * 299.99892 * 1 2 3 29 29 H 1.09001 * 109.46842 * 59.99949 * 1 2 3 30 30 H 1.09006 * 110.48183 * 84.88094 * 7 5 3 31 31 H 1.09006 * 110.59889 * 322.29916 * 7 5 3 32 32 H 1.08998 * 110.03893 * 264.32726 * 8 7 5 33 33 H 1.09002 * 110.03433 * 142.89632 * 8 7 5 34 34 H 1.08996 * 109.46845 * 269.99320 * 14 13 11 35 35 H 1.08995 * 109.46810 * 29.99980 * 14 13 11 36 36 H 1.09005 * 109.46841 * 149.99772 * 14 13 11 37 37 H 1.09004 * 109.47059 * 59.99372 * 17 15 13 38 38 H 1.08992 * 109.47060 * 179.97438 * 17 15 13 39 39 H 1.09004 * 109.46930 * 299.99770 * 17 15 13 40 40 H 0.97003 * 119.99339 * 179.97438 * 21 20 18 41 41 H 1.09006 * 110.48522 * 95.07406 * 26 9 8 42 42 H 1.09000 * 110.48989 * 217.70769 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9755 0.8135 -0.8993 7 6 4.1512 0.6121 1.2714 8 6 5.5345 1.2735 1.4407 9 6 5.4658 2.6282 0.7142 10 1 6.2038 2.6600 -0.0873 11 6 5.7147 3.7501 1.6893 12 8 4.8562 4.5839 1.8864 13 7 6.8913 3.8268 2.3422 14 6 7.9284 2.8199 2.1037 15 6 7.1330 4.9171 3.2904 16 1 6.2548 5.5612 3.3351 17 6 7.4086 4.3344 4.6781 18 6 8.3242 5.7217 2.8378 19 1 8.8489 5.4480 1.9344 20 6 8.7446 6.8066 3.5775 21 7 8.1059 7.1395 4.6778 22 14 10.2216 7.8034 3.0169 23 1 10.7586 7.2272 1.7580 24 1 9.8084 9.2099 2.7801 25 1 11.2715 7.7658 4.0663 26 6 4.0434 2.7425 0.1284 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 4.2575 -0.4631 1.1269 31 1 3.5208 0.8194 2.1362 32 1 6.3053 0.6475 0.9912 33 1 5.7479 1.4275 2.4985 34 1 7.8015 1.9947 2.8044 35 1 7.8442 2.4465 1.0832 36 1 8.9110 3.2698 2.2462 37 1 8.2866 3.6900 4.6337 38 1 7.5889 5.1456 5.3834 39 1 6.5470 3.7525 5.0054 40 1 8.4020 7.9025 5.1984 41 1 3.3944 3.2957 0.8074 42 1 4.0711 3.2224 -0.8499 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412178239.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:34 Heat of formation + Delta-G solvation = -131.577456 kcal Electronic energy + Delta-G solvation = -23087.190740 eV Core-core repulsion = 19646.099242 eV Total energy + Delta-G solvation = -3441.091498 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.78964 -39.54470 -37.18708 -36.30834 -35.27050 -32.88274 -30.58159 -29.00798 -28.77288 -27.51477 -26.07963 -25.20817 -23.17113 -21.84359 -20.45570 -19.88284 -18.36009 -17.54409 -16.93420 -16.60439 -16.31171 -16.24595 -15.53486 -15.21119 -14.46182 -14.12006 -13.82616 -13.68400 -13.16772 -12.89515 -12.54641 -12.43999 -12.35662 -12.22282 -11.76982 -11.49108 -11.35968 -11.23990 -11.15549 -11.03278 -10.96601 -10.88690 -10.79943 -10.60632 -10.59828 -10.37919 -10.21768 -10.15820 -9.15965 -8.83805 -8.41384 -7.55590 -6.06350 -4.14260 2.12268 2.57136 3.26223 3.33976 3.36374 3.42630 3.96549 4.32764 4.40014 4.42958 4.72370 4.90557 4.96990 5.00565 5.18784 5.24757 5.25895 5.33100 5.36999 5.42978 5.52297 5.62368 5.76547 5.86622 5.93689 6.06468 6.09275 6.21764 6.27205 6.40689 6.51064 6.76950 6.85171 7.08543 7.45722 7.56392 7.66072 7.73603 8.03788 8.21985 8.56844 8.85301 9.10371 9.52409 10.99002 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.035748 B = 0.003575 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.083196 B = 7829.365176 C = 7985.237978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.361 6.361 3 C 0.467 3.533 4 O -0.499 6.499 5 C -0.088 4.088 6 H 0.114 0.886 7 C -0.109 4.109 8 C -0.114 4.114 9 C -0.114 4.114 10 H 0.097 0.903 11 C 0.508 3.492 12 O -0.549 6.549 13 N -0.592 5.592 14 C 0.084 3.916 15 C 0.257 3.743 16 H 0.063 0.937 17 C -0.145 4.145 18 C -0.525 4.525 19 H 0.060 0.940 20 C 0.064 3.936 21 N -0.887 5.887 22 Si 0.898 3.102 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.283 1.283 26 C -0.094 4.094 27 H 0.099 0.901 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.043 0.957 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.029 0.971 38 H 0.092 0.908 39 H 0.010 0.990 40 H 0.262 0.738 41 H 0.100 0.900 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.952 -17.434 -8.472 20.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.278 6.278 3 C 0.309 3.691 4 O -0.386 6.386 5 C -0.107 4.107 6 H 0.132 0.868 7 C -0.146 4.146 8 C -0.152 4.152 9 C -0.135 4.135 10 H 0.116 0.884 11 C 0.294 3.706 12 O -0.428 6.428 13 N -0.323 5.323 14 C -0.060 4.060 15 C 0.157 3.843 16 H 0.080 0.920 17 C -0.204 4.204 18 C -0.564 4.564 19 H 0.078 0.922 20 C -0.138 4.138 21 N -0.526 5.526 22 Si 0.726 3.274 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.210 1.210 26 C -0.131 4.131 27 H 0.118 0.882 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.048 0.952 38 H 0.111 0.889 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.119 0.881 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.605 -16.536 -8.188 19.958 hybrid contribution 0.735 0.587 -0.304 0.988 sum -6.870 -15.949 -8.491 19.330 Atomic orbital electron populations 1.23249 0.76654 1.03482 1.02596 1.86511 1.23200 1.33739 1.84303 1.23746 0.91964 0.81207 0.72159 1.90699 1.67046 1.36326 1.44493 1.22097 0.86542 1.00201 1.01879 0.86766 1.22329 0.96614 0.99900 0.95782 1.22204 0.96824 0.94319 1.01838 1.21928 0.98627 0.94757 0.98232 0.88446 1.20260 0.82491 0.86069 0.81773 1.90651 1.44494 1.41924 1.65727 1.48192 1.13291 1.28195 1.42632 1.21654 0.93689 0.91510 0.99172 1.18932 0.98021 0.83279 0.84096 0.91966 1.22076 0.97025 1.00646 1.00649 1.21364 1.13345 1.12339 1.09315 0.92205 1.24901 0.97059 0.97016 0.94869 1.69894 1.40108 1.27408 1.15155 0.86444 0.82301 0.80096 0.78571 1.19822 1.20922 1.20960 1.22244 0.95235 0.92852 1.02804 0.88227 0.91889 0.91995 0.90141 0.90984 0.90487 0.90380 0.93853 0.92747 0.90316 0.95198 0.88902 0.97092 0.92756 0.88113 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.94 10.55 -39.24 -0.41 -4.35 16 3 C 0.47 6.04 7.26 36.01 0.26 6.30 16 4 O -0.50 -8.18 15.55 -18.75 -0.29 -8.47 16 5 C -0.09 -0.98 3.39 -89.79 -0.30 -1.29 16 6 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 7 C -0.11 -1.12 6.25 -25.07 -0.16 -1.28 16 8 C -0.11 -1.29 4.92 -25.62 -0.13 -1.42 16 9 C -0.11 -1.64 2.43 -90.65 -0.22 -1.86 16 10 H 0.10 1.21 7.41 -51.93 -0.39 0.83 16 11 C 0.51 10.42 6.86 -10.98 -0.08 10.35 16 12 O -0.55 -13.80 14.74 5.56 0.08 -13.72 16 13 N -0.59 -12.45 2.72 -175.26 -0.48 -12.92 16 14 C 0.08 1.35 8.03 59.85 0.48 1.83 16 15 C 0.26 6.59 2.64 -69.08 -0.18 6.41 16 16 H 0.06 1.87 6.90 -51.93 -0.36 1.51 16 17 C -0.15 -3.49 8.97 37.16 0.33 -3.16 16 18 C -0.52 -14.20 7.99 -34.44 -0.28 -14.47 16 19 H 0.06 1.59 7.33 -52.49 -0.38 1.20 16 20 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 21 N -0.89 -25.29 11.32 55.43 0.63 -24.66 16 22 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 26 C -0.09 -1.35 5.18 -25.09 -0.13 -1.48 16 27 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 29 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.84 8.05 -51.93 -0.42 0.42 16 32 H 0.08 0.67 8.12 -51.93 -0.42 0.24 16 33 H 0.08 1.01 6.68 -51.93 -0.35 0.67 16 34 H 0.04 0.61 7.48 -51.93 -0.39 0.22 16 35 H 0.05 0.70 6.19 -51.93 -0.32 0.38 16 36 H 0.08 1.37 7.02 -51.93 -0.36 1.01 16 37 H 0.03 0.65 7.67 -51.93 -0.40 0.26 16 38 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 39 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.10 1.84 6.30 -51.93 -0.33 1.52 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 336.02 15.07 5.06 5.06 Total: -1.00 -33.45 336.02 -6.37 -39.82 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.52 Total: 0.26 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 0.58 Total: 2.93 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.15 Total: -37.59 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.62 Total: -26.54 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.45 -6.37 -39.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412178239.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.755 kcal (2) G-P(sol) polarization free energy of solvation -33.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds