Wall clock time and date at job start Tue Mar 31 2020 06:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46985 * 2 1 4 4 C 1.50697 * 109.47378 * 119.99855 * 2 1 3 5 5 O 1.20827 * 119.99929 * 119.99852 * 4 2 1 6 6 O 1.34229 * 119.99951 * 300.00526 * 4 2 1 7 7 C 1.45205 * 117.00112 * 179.97438 * 6 4 2 8 8 C 1.53009 * 109.46928 * 59.99702 * 7 6 4 9 9 C 1.52998 * 109.47431 * 179.97438 * 7 6 4 10 10 C 1.52997 * 109.47135 * 300.00349 * 7 6 4 11 11 C 1.50698 * 109.47274 * 240.00279 * 2 1 3 12 12 O 1.21300 * 119.99697 * 267.37281 * 11 2 1 13 13 N 1.34769 * 120.00181 * 87.36906 * 11 2 1 14 14 C 1.37102 * 120.00092 * 184.66416 * 13 11 2 15 15 H 1.07999 * 119.99931 * 330.65750 * 14 13 11 16 16 C 1.38951 * 119.99891 * 150.65274 * 14 13 11 17 17 N 1.31408 * 120.00360 * 347.96488 * 16 14 13 18 18 Si 1.86804 * 119.99610 * 167.96080 * 16 14 13 19 19 H 1.48497 * 109.47280 * 60.00467 * 18 16 14 20 20 H 1.48504 * 109.46704 * 180.02562 * 18 16 14 21 21 H 1.48492 * 109.47324 * 299.99972 * 18 16 14 22 22 C 1.46498 * 120.00092 * 4.94850 * 13 11 2 23 23 C 1.53001 * 117.50221 * 136.70467 * 22 13 11 24 24 C 1.52995 * 117.50427 * 68.04291 * 22 13 11 25 25 H 1.09003 * 109.46983 * 184.97632 * 1 2 3 26 26 H 1.09002 * 109.47444 * 304.96807 * 1 2 3 27 27 H 1.08995 * 109.47359 * 64.97349 * 1 2 3 28 28 H 1.08998 * 109.46827 * 60.00000 * 8 7 6 29 29 H 1.08994 * 109.47050 * 180.02562 * 8 7 6 30 30 H 1.09000 * 109.46787 * 300.00054 * 8 7 6 31 31 H 1.08996 * 109.46875 * 59.99790 * 9 7 6 32 32 H 1.08994 * 109.47272 * 180.02562 * 9 7 6 33 33 H 1.09005 * 109.47013 * 300.00120 * 9 7 6 34 34 H 1.09000 * 109.47767 * 59.99219 * 10 7 6 35 35 H 1.09001 * 109.47031 * 180.02562 * 10 7 6 36 36 H 1.09007 * 109.46694 * 299.99343 * 10 7 6 37 37 H 0.96995 * 120.00227 * 185.03833 * 17 16 14 38 38 H 1.09003 * 115.54534 * 282.36871 * 22 13 11 39 39 H 1.09002 * 117.49690 * 359.97438 * 23 22 13 40 40 H 1.09004 * 117.49701 * 145.01534 * 23 22 13 41 41 H 1.08999 * 117.50025 * 214.98428 * 24 22 13 42 42 H 1.09009 * 117.49711 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7270 -1.6927 1.1196 6 8 1.7080 -0.2518 2.4496 7 6 2.2268 -0.9863 3.5897 8 6 3.7562 -0.9858 3.5436 9 6 1.7558 -0.3191 4.8834 10 6 1.7157 -2.4276 3.5432 11 6 2.0323 -0.7103 -1.2305 12 8 2.2799 -1.8970 -1.1871 13 7 2.2065 -0.0272 -2.3791 14 6 2.5714 -0.6901 -3.5224 15 1 3.1605 -1.5929 -3.4584 16 6 2.1831 -0.2003 -4.7634 17 7 1.2790 0.7502 -4.8411 18 14 2.9464 -0.8930 -6.3212 19 1 2.6644 -2.3485 -6.4058 20 1 2.3671 -0.2065 -7.5038 21 1 4.4148 -0.6742 -6.2926 22 6 2.0119 1.4246 -2.4046 23 6 3.0394 2.2618 -3.1691 24 6 3.0181 2.2859 -1.6387 25 1 -0.3633 -1.0238 0.0891 26 1 -0.3634 0.5890 0.8421 27 1 -0.3634 0.4347 -0.9311 28 1 4.1203 0.0410 3.5767 29 1 4.1456 -1.5375 4.3992 30 1 4.0920 -1.4609 2.6219 31 1 0.6663 -0.3190 4.9164 32 1 2.1456 -0.8702 5.7392 33 1 2.1203 0.7077 4.9163 34 1 2.0516 -2.9028 2.6215 35 1 2.1048 -2.9788 4.3993 36 1 0.6262 -2.4280 3.5760 37 1 0.9545 1.0412 -5.7076 38 1 0.9749 1.7596 -2.4243 39 1 3.8603 1.7324 -3.6527 40 1 2.6782 3.1478 -3.6913 41 1 2.6432 3.1877 -1.1547 42 1 3.8248 1.7722 -1.1154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413237729.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:39 Heat of formation + Delta-G solvation = -89.354775 kcal Electronic energy + Delta-G solvation = -23930.279112 eV Core-core repulsion = 20491.018527 eV Total energy + Delta-G solvation = -3439.260586 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.58582 -38.82101 -36.76010 -35.76647 -34.03508 -33.06529 -32.35245 -30.92628 -27.38639 -27.31887 -25.51798 -24.60399 -22.43535 -21.48456 -21.30824 -19.52723 -18.49260 -16.94892 -16.71470 -16.13131 -15.82853 -15.44685 -15.08402 -14.48021 -14.33484 -14.00392 -13.57550 -13.50943 -13.35616 -12.96363 -12.46868 -12.23561 -12.08112 -11.94533 -11.82566 -11.76468 -11.71758 -11.40430 -11.17715 -11.09071 -10.97958 -10.87084 -10.70692 -10.45582 -10.36120 -10.14029 -9.78398 -9.54530 -9.27301 -8.83249 -8.24023 -7.58710 -6.28886 -3.87591 2.76602 2.89868 3.21652 3.26095 3.30732 3.89353 4.15221 4.66685 4.73861 4.78050 4.80730 4.94467 4.99707 5.10075 5.37921 5.46587 5.55100 5.58937 5.64872 5.69590 5.75453 5.76631 5.90301 5.91087 5.93896 5.98697 6.08281 6.16952 6.23449 6.24862 6.34703 6.41499 6.50547 6.72511 6.88181 6.91120 7.12913 7.61739 8.18612 8.36632 8.52775 9.21799 9.41994 10.00633 10.78213 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.028566 B = 0.004810 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.937983 B = 5819.506502 C = 6147.756383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.102 4.102 3 H 0.117 0.883 4 C 0.468 3.532 5 O -0.464 6.464 6 O -0.357 6.357 7 C 0.116 3.884 8 C -0.183 4.183 9 C -0.138 4.138 10 C -0.183 4.183 11 C 0.470 3.530 12 O -0.548 6.548 13 N -0.420 5.420 14 C -0.312 4.312 15 H 0.094 0.906 16 C 0.044 3.956 17 N -0.871 5.871 18 Si 0.919 3.081 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.274 1.274 22 C 0.125 3.875 23 C -0.135 4.135 24 C -0.231 4.231 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.267 0.733 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.783 4.333 13.456 14.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.124 4.124 3 H 0.135 0.865 4 C 0.308 3.692 5 O -0.347 6.347 6 O -0.276 6.276 7 C 0.080 3.920 8 C -0.240 4.240 9 C -0.195 4.195 10 C -0.241 4.241 11 C 0.256 3.744 12 O -0.429 6.429 13 N -0.140 5.140 14 C -0.439 4.439 15 H 0.112 0.888 16 C -0.161 4.161 17 N -0.508 5.508 18 Si 0.746 3.254 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.200 1.200 22 C 0.019 3.981 23 C -0.172 4.172 24 C -0.270 4.270 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.123 0.877 39 H 0.110 0.890 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.476 3.545 13.291 13.764 hybrid contribution 0.334 -0.161 -0.847 0.925 sum -0.142 3.384 12.444 12.896 Atomic orbital electron populations 1.21561 0.90893 1.02936 1.03322 1.21156 0.99327 1.01686 0.90272 0.86488 1.23252 0.78427 0.83514 0.84011 1.90644 1.33532 1.24130 1.86408 1.86539 1.70446 1.55840 1.14735 1.22066 0.93912 0.91756 0.84296 1.22489 0.94323 1.02693 1.04544 1.21822 1.02218 1.01227 0.94240 1.22489 1.01498 0.95482 1.04592 1.19316 0.83823 0.87211 0.84077 1.90622 1.53363 1.15083 1.83812 1.42925 1.59880 1.03540 1.07610 1.19442 1.32375 1.09870 0.82229 0.88800 1.25264 0.95566 0.96265 0.99008 1.69844 1.26945 1.28530 1.25520 0.86114 0.79381 0.79233 0.80698 1.19863 1.20972 1.19954 1.21126 0.94424 0.80722 1.01792 1.22685 1.02060 1.01108 0.91352 1.23610 1.04216 1.02630 0.96498 0.92095 0.91345 0.90459 0.92166 0.91453 0.89605 0.91611 0.90748 0.91636 0.89418 0.91520 0.92158 0.92247 0.87703 0.88973 0.89631 0.89317 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 9.10 37.16 0.34 -1.81 16 2 C -0.10 -1.97 2.58 -92.93 -0.24 -2.21 16 3 H 0.12 2.04 5.57 -51.93 -0.29 1.75 16 4 C 0.47 9.02 6.51 36.00 0.23 9.26 16 5 O -0.46 -10.36 10.08 -26.56 -0.27 -10.62 16 6 O -0.36 -5.72 9.81 -39.25 -0.39 -6.11 16 7 C 0.12 1.56 1.13 -90.62 -0.10 1.46 16 8 C -0.18 -2.44 8.37 37.16 0.31 -2.12 16 9 C -0.14 -1.36 8.85 37.16 0.33 -1.03 16 10 C -0.18 -2.48 8.37 37.16 0.31 -2.17 16 11 C 0.47 11.65 6.54 -10.99 -0.07 11.58 16 12 O -0.55 -15.85 14.53 -18.05 -0.26 -16.11 16 13 N -0.42 -10.55 2.90 -107.73 -0.31 -10.86 16 14 C -0.31 -8.59 8.67 -14.93 -0.13 -8.72 16 15 H 0.09 2.76 7.50 -52.49 -0.39 2.37 16 16 C 0.04 1.13 4.53 -17.47 -0.08 1.05 16 17 N -0.87 -22.34 10.99 55.50 0.61 -21.73 16 18 Si 0.92 20.63 29.57 -169.99 -5.03 15.60 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 C 0.12 2.67 3.36 -67.93 -0.23 2.44 16 23 C -0.13 -2.70 8.53 -26.69 -0.23 -2.93 16 24 C -0.23 -4.09 8.64 -26.70 -0.23 -4.32 16 25 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.09 1.42 5.89 -51.93 -0.31 1.11 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 1.49 5.89 -51.93 -0.31 1.18 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.27 6.59 8.32 -40.82 -0.34 6.25 16 38 H 0.11 2.24 8.14 -51.93 -0.42 1.81 16 39 H 0.09 2.03 7.69 -51.93 -0.40 1.63 16 40 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 41 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.08 1.54 8.14 -51.92 -0.42 1.12 16 LS Contribution 339.25 15.07 5.11 5.11 Total: -1.00 -31.47 339.25 -7.07 -38.54 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -6.75 Total: 5.71 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 0.21 Total: 0.47 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 0.30 Total: -32.59 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -0.92 Total: -32.84 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.47 -7.07 -38.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413237729.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.816 kcal (2) G-P(sol) polarization free energy of solvation -31.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds