Wall clock time and date at job start Tue Mar 31 2020 06:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.46638 * 2 1 4 4 C 1.50692 * 109.47302 * 240.00115 * 2 1 3 5 5 O 1.20827 * 120.00461 * 239.99574 * 4 2 1 6 6 O 1.34231 * 120.00031 * 59.99669 * 4 2 1 7 7 C 1.45201 * 117.00391 * 179.97438 * 6 4 2 8 8 C 1.52999 * 109.46790 * 59.99758 * 7 6 4 9 9 C 1.52998 * 109.47691 * 180.02562 * 7 6 4 10 10 C 1.53002 * 109.46947 * 300.00377 * 7 6 4 11 11 C 1.50700 * 109.47365 * 119.99558 * 2 1 3 12 12 O 1.21294 * 119.99442 * 120.00506 * 11 2 1 13 13 N 1.34775 * 120.00107 * 300.00700 * 11 2 1 14 14 C 1.37094 * 119.99751 * 179.97438 * 13 11 2 15 15 H 1.08005 * 120.00252 * 224.17976 * 14 13 11 16 16 C 1.38951 * 120.00162 * 44.18192 * 14 13 11 17 17 N 1.31412 * 120.00060 * 18.05558 * 16 14 13 18 18 Si 1.86807 * 119.99955 * 198.05897 * 16 14 13 19 19 H 1.48493 * 109.46977 * 179.97438 * 18 16 14 20 20 H 1.48509 * 109.46738 * 299.99525 * 18 16 14 21 21 H 1.48496 * 109.47316 * 59.99776 * 18 16 14 22 22 C 1.46495 * 120.00395 * 359.97438 * 13 11 2 23 23 C 1.52995 * 117.50269 * 189.27883 * 22 13 11 24 24 C 1.52997 * 117.50253 * 120.61564 * 22 13 11 25 25 H 1.08999 * 109.47547 * 60.00193 * 1 2 3 26 26 H 1.09008 * 109.46638 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47228 * 299.99580 * 1 2 3 28 28 H 1.09005 * 109.46951 * 60.00542 * 8 7 6 29 29 H 1.08999 * 109.47418 * 180.02562 * 8 7 6 30 30 H 1.09000 * 109.47628 * 300.00612 * 8 7 6 31 31 H 1.08997 * 109.46858 * 59.99630 * 9 7 6 32 32 H 1.08997 * 109.47552 * 180.02562 * 9 7 6 33 33 H 1.09008 * 109.46695 * 300.00454 * 9 7 6 34 34 H 1.08994 * 109.47628 * 59.99748 * 10 7 6 35 35 H 1.09007 * 109.46616 * 179.97438 * 10 7 6 36 36 H 1.08995 * 109.47034 * 299.99396 * 10 7 6 37 37 H 0.97003 * 119.99732 * 174.90973 * 17 16 14 38 38 H 1.09008 * 115.54881 * 334.94649 * 22 13 11 39 39 H 1.09004 * 117.49570 * 0.02562 * 23 22 13 40 40 H 1.09001 * 117.50151 * 145.01373 * 23 22 13 41 41 H 1.08999 * 117.50065 * 214.98185 * 24 22 13 42 42 H 1.09004 * 117.49511 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2304 5 8 2.7271 -1.6927 -1.1196 6 8 1.7080 -0.2518 -2.4495 7 6 2.2277 -0.9855 -3.5897 8 6 1.7177 -2.4273 -3.5436 9 6 1.7566 -0.3184 -4.8834 10 6 3.7570 -0.9839 -3.5432 11 6 2.0324 -0.7103 1.2305 12 8 2.7298 -1.6964 1.1191 13 7 1.7067 -0.2499 2.4546 14 6 2.1634 -0.8964 3.5739 15 1 1.4948 -1.0800 4.4020 16 6 3.4864 -1.3154 3.6431 17 7 4.3814 -0.8028 2.8288 18 14 3.9927 -2.6075 4.8937 19 1 5.4469 -2.8787 4.7640 20 1 3.7013 -2.1119 6.2630 21 1 3.2324 -3.8591 4.6479 22 6 0.8648 0.9414 2.5891 23 6 0.7083 1.5417 3.9876 24 6 -0.4585 0.7901 3.3419 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.6281 -2.4285 -3.5767 29 1 2.1081 -2.9783 -4.3992 30 1 2.0536 -2.9024 -2.6219 31 1 2.1203 0.7086 -4.9159 32 1 2.1463 -0.8695 -5.7393 33 1 0.6670 -0.3192 -4.9167 34 1 4.0931 -1.4589 -2.6216 35 1 4.1470 -1.5352 -4.3989 36 1 4.1204 0.0432 -3.5760 37 1 5.3171 -1.0398 2.9254 38 1 0.8877 1.6310 1.7451 39 1 1.2320 1.0505 4.8076 40 1 0.6278 2.6261 4.0638 41 1 -1.3061 1.3803 2.9935 42 1 -0.7028 -0.1961 3.7368 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413237731.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:41 Heat of formation + Delta-G solvation = -77.039636 kcal Electronic energy + Delta-G solvation = -24070.421202 eV Core-core repulsion = 20631.694641 eV Total energy + Delta-G solvation = -3438.726561 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.45517 -38.71287 -36.68232 -35.63080 -33.95078 -32.94707 -32.31993 -30.54921 -27.31753 -27.23136 -25.18065 -24.72994 -22.27300 -21.68364 -20.96609 -19.70568 -18.72924 -16.81913 -16.19072 -16.04786 -15.95862 -15.44339 -14.66803 -14.41641 -14.19164 -13.78093 -13.54961 -13.45910 -13.27819 -12.70154 -12.38971 -12.23959 -12.18027 -11.93003 -11.73807 -11.64654 -11.43204 -11.29842 -11.06736 -10.97120 -10.86512 -10.78700 -10.77609 -10.47916 -10.15606 -10.02344 -9.91815 -9.67909 -9.26935 -8.64650 -7.80179 -6.96109 -6.06839 -3.82900 2.92082 3.02880 3.33532 3.41401 3.44704 4.13332 4.30412 4.78303 4.84765 4.86344 4.88608 5.02423 5.08292 5.24502 5.45171 5.52809 5.56862 5.61290 5.62313 5.65657 5.76246 5.79402 5.82656 5.93831 5.98883 6.00762 6.05387 6.14387 6.22571 6.25907 6.43332 6.45548 6.51132 6.55993 6.75076 6.96869 7.01358 7.65341 8.30527 8.53132 9.08395 9.21024 9.68740 10.33358 11.02020 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.019200 B = 0.005929 C = 0.004863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.962575 B = 4721.473184 C = 5756.947894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 H 0.110 0.890 4 C 0.464 3.536 5 O -0.449 6.449 6 O -0.361 6.361 7 C 0.117 3.883 8 C -0.182 4.182 9 C -0.137 4.137 10 C -0.183 4.183 11 C 0.486 3.514 12 O -0.489 6.489 13 N -0.426 5.426 14 C -0.348 4.348 15 H 0.077 0.923 16 C 0.074 3.926 17 N -0.831 5.831 18 Si 0.913 3.087 19 H -0.287 1.287 20 H -0.278 1.278 21 H -0.274 1.274 22 C 0.074 3.926 23 C -0.176 4.176 24 C -0.208 4.208 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.086 0.914 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.265 0.735 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.489 4.831 -10.228 13.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.125 4.125 3 H 0.127 0.873 4 C 0.303 3.697 5 O -0.331 6.331 6 O -0.280 6.280 7 C 0.081 3.919 8 C -0.240 4.240 9 C -0.195 4.195 10 C -0.241 4.241 11 C 0.271 3.729 12 O -0.363 6.363 13 N -0.148 5.148 14 C -0.475 4.475 15 H 0.095 0.905 16 C -0.137 4.137 17 N -0.464 5.464 18 Si 0.740 3.260 19 H -0.212 1.212 20 H -0.204 1.204 21 H -0.200 1.200 22 C -0.033 4.033 23 C -0.214 4.214 24 C -0.247 4.247 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.104 0.896 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.643 3.883 -10.404 12.940 hybrid contribution 0.425 -0.422 0.510 0.787 sum -6.218 3.460 -9.894 12.188 Atomic orbital electron populations 1.21915 0.91541 1.03211 1.03544 1.21067 0.98573 1.01357 0.91463 0.87266 1.23127 0.78778 0.83925 0.83842 1.90692 1.32340 1.23996 1.86034 1.86523 1.70524 1.56153 1.14836 1.22024 0.93954 0.91653 0.84294 1.22479 1.01312 0.95599 1.04571 1.21817 1.02077 1.01215 0.94342 1.22486 0.94270 1.02695 1.04611 1.19110 0.84771 0.86186 0.82851 1.90675 1.35663 1.25729 1.84186 1.42624 1.45879 1.21784 1.04495 1.18754 0.94021 1.38175 0.96537 0.90509 1.25243 0.95659 0.96681 0.96153 1.69808 1.01468 1.39530 1.35639 0.86268 0.77480 0.82240 0.79968 1.21245 1.20416 1.19975 1.21764 0.94368 0.92067 0.95084 1.23118 1.01765 0.98176 0.98356 1.23342 0.92322 1.02059 1.07007 0.91742 0.92230 0.89586 0.92278 0.91593 0.89473 0.91689 0.90815 0.91721 0.89386 0.91602 0.92232 0.92531 0.87744 0.87452 0.89895 0.89776 0.88993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.74 37.16 0.32 -1.97 16 2 C -0.10 -2.02 2.37 -92.93 -0.22 -2.24 16 3 H 0.11 1.98 7.57 -51.92 -0.39 1.59 16 4 C 0.46 9.48 6.56 36.00 0.24 9.71 16 5 O -0.45 -10.77 9.68 -26.86 -0.26 -11.03 16 6 O -0.36 -6.13 9.79 -39.26 -0.38 -6.51 16 7 C 0.12 1.69 1.13 -90.62 -0.10 1.59 16 8 C -0.18 -2.61 8.37 37.16 0.31 -2.30 16 9 C -0.14 -1.46 8.85 37.16 0.33 -1.13 16 10 C -0.18 -2.72 8.37 37.16 0.31 -2.41 16 11 C 0.49 12.48 6.36 -10.99 -0.07 12.41 16 12 O -0.49 -14.91 11.93 -18.97 -0.23 -15.13 16 13 N -0.43 -10.53 2.85 -107.73 -0.31 -10.83 16 14 C -0.35 -9.48 7.72 -14.93 -0.12 -9.60 16 15 H 0.08 2.02 7.53 -52.48 -0.40 1.62 16 16 C 0.07 2.09 4.39 -17.47 -0.08 2.01 16 17 N -0.83 -25.05 11.72 55.50 0.65 -24.40 16 18 Si 0.91 22.34 29.59 -169.99 -5.03 17.30 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.27 -6.84 7.11 56.52 0.40 -6.43 16 22 C 0.07 1.42 4.32 -67.94 -0.29 1.12 16 23 C -0.18 -3.10 9.82 -26.70 -0.26 -3.36 16 24 C -0.21 -3.41 9.48 -26.70 -0.25 -3.66 16 25 H 0.06 0.85 8.11 -51.93 -0.42 0.43 16 26 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 27 H 0.09 1.28 4.44 -51.93 -0.23 1.05 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.09 1.55 5.89 -51.93 -0.31 1.25 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 34 H 0.09 1.64 5.89 -51.93 -0.31 1.33 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.26 7.71 8.32 -40.82 -0.34 7.37 16 38 H 0.11 1.76 6.13 -51.92 -0.32 1.44 16 39 H 0.11 2.13 6.91 -51.93 -0.36 1.77 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 LS Contribution 333.71 15.07 5.03 5.03 Total: -1.00 -34.24 333.71 -6.92 -41.17 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.51 Total: 4.21 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 0.12 Total: 0.19 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.34 Total: -35.23 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -0.87 Total: -32.67 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.24 -6.92 -41.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413237731.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.872 kcal (2) G-P(sol) polarization free energy of solvation -34.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds