Wall clock time and date at job start Tue Mar 31 2020 05:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47128 * 2 1 4 4 H 1.08997 * 109.46566 * 282.69837 * 3 2 1 5 5 C 1.50706 * 109.46884 * 162.70219 * 3 2 1 6 6 O 1.20828 * 119.99492 * 239.99626 * 5 3 2 7 7 O 1.34217 * 120.00128 * 59.99815 * 5 3 2 8 8 C 1.45202 * 117.00017 * 179.97438 * 7 5 3 9 9 C 1.50699 * 109.47148 * 42.69905 * 3 2 1 10 10 O 1.21292 * 119.99712 * 28.63502 * 9 3 2 11 11 N 1.34772 * 119.99805 * 208.63395 * 9 3 2 12 12 C 1.37100 * 119.99718 * 185.97564 * 11 9 3 13 13 H 1.07996 * 120.00123 * 36.39331 * 12 11 9 14 14 C 1.38950 * 119.99679 * 216.39073 * 12 11 9 15 15 N 1.31411 * 120.00528 * 303.61431 * 14 12 11 16 16 Si 1.86802 * 119.99483 * 123.61550 * 14 12 11 17 17 H 1.48498 * 109.47299 * 60.00253 * 16 14 12 18 18 H 1.48506 * 109.46877 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47241 * 299.99612 * 16 14 12 20 20 C 1.46499 * 120.00380 * 5.97151 * 11 9 3 21 21 C 1.54958 * 110.92228 * 114.42118 * 20 11 9 22 22 C 1.54269 * 104.15778 * 156.29692 * 21 20 11 23 23 C 1.53873 * 106.64108 * 336.45041 * 22 21 20 24 24 C 1.54261 * 106.60003 * 359.97276 * 23 22 21 25 25 H 1.08999 * 109.46946 * 301.73172 * 1 2 3 26 26 H 1.08993 * 109.47091 * 61.73489 * 1 2 3 27 27 H 1.09002 * 109.47016 * 181.73650 * 1 2 3 28 28 H 1.08999 * 109.47119 * 239.99696 * 2 1 3 29 29 H 1.09010 * 109.47017 * 119.99930 * 2 1 3 30 30 H 1.09005 * 109.47056 * 59.99795 * 8 7 5 31 31 H 1.09005 * 109.47583 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.47101 * 300.00150 * 8 7 5 33 33 H 0.96994 * 120.00046 * 180.02562 * 15 14 12 34 34 H 1.09004 * 110.66789 * 351.12029 * 20 11 9 35 35 H 1.09003 * 110.47957 * 37.65007 * 21 20 11 36 36 H 1.08998 * 110.53683 * 274.97591 * 21 20 11 37 37 H 1.09001 * 110.03531 * 217.13312 * 22 21 20 38 38 H 1.09001 * 110.02919 * 95.76215 * 22 21 20 39 39 H 1.08996 * 110.03054 * 119.26036 * 23 22 21 40 40 H 1.09004 * 110.03187 * 240.63855 * 23 22 21 41 41 H 1.08997 * 110.48945 * 142.29169 * 24 23 22 42 42 H 1.09002 * 110.48612 * 264.80078 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.9481 1.8603 -1.0025 5 6 3.4865 1.4639 0.4225 6 8 3.8197 2.0829 1.4052 7 8 4.4045 0.7953 -0.2928 8 6 5.7784 0.8607 0.1724 9 6 1.2230 2.2642 0.9635 10 8 0.7134 1.7368 1.9296 11 7 1.0586 3.5850 0.7517 12 6 0.4206 4.3554 1.6893 13 1 0.5590 4.1514 2.7407 14 6 -0.4042 5.3986 1.2866 15 7 0.0685 6.3481 0.5107 16 14 -2.1850 5.4514 1.8483 17 1 -2.2348 5.5067 3.3315 18 1 -2.8458 6.6567 1.2862 19 1 -2.8898 4.2334 1.3744 20 6 1.5618 4.1975 -0.4803 21 6 0.3947 4.7234 -1.3535 22 6 1.0405 5.8192 -2.2264 23 6 2.2910 6.3036 -1.4719 24 6 2.3619 5.4859 -0.1658 25 1 -0.3633 0.5405 0.8741 26 1 -0.3633 0.4866 -0.9051 27 1 -0.3633 -1.0272 0.0311 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8901 30 1 5.8400 0.4535 1.1817 31 1 6.4158 0.2794 -0.4939 32 1 6.1109 1.8988 0.1786 33 1 -0.5072 7.0765 0.2300 34 1 2.1736 3.4898 -1.0398 35 1 -0.3894 5.1480 -0.7266 36 1 -0.0056 3.9248 -1.9781 37 1 0.3437 6.6460 -2.3640 38 1 1.3249 5.4062 -3.1942 39 1 3.1824 6.1249 -2.0732 40 1 2.2015 7.3658 -1.2439 41 1 3.3965 5.2429 0.0766 42 1 1.8980 6.0350 0.6537 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413483092.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:55 Heat of formation + Delta-G solvation = -83.050889 kcal Electronic energy + Delta-G solvation = -24727.827611 eV Core-core repulsion = 21288.840382 eV Total energy + Delta-G solvation = -3438.987229 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.45336 -38.92034 -37.15712 -35.99648 -34.02061 -33.23554 -32.23834 -28.81416 -27.63555 -27.13388 -26.71421 -24.82893 -21.94349 -21.41366 -20.03983 -19.38538 -18.58400 -17.36282 -16.83022 -16.62968 -16.27648 -15.68402 -14.75050 -14.50543 -14.42030 -13.87074 -13.84517 -13.22543 -13.16902 -12.77071 -12.75592 -12.45277 -12.12847 -11.92163 -11.55712 -11.48040 -11.27507 -10.99647 -10.84632 -10.58241 -10.53771 -10.44448 -10.33090 -10.23860 -10.15635 -10.02891 -9.93063 -9.79270 -9.28022 -8.35593 -7.89472 -7.46098 -6.70976 -3.75180 2.57483 2.77737 3.18556 3.30363 3.40781 3.98816 4.07551 4.56735 4.79244 5.01834 5.21360 5.26354 5.29889 5.33108 5.51010 5.61719 5.69937 5.70439 5.84031 5.92631 5.99775 6.12200 6.15413 6.33588 6.47268 6.52554 6.55725 6.59738 6.61738 6.63008 6.85311 6.90370 6.98049 7.05013 7.23601 7.34495 7.53635 8.02726 8.09422 8.31418 8.54931 9.15253 9.37656 10.02380 10.18353 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.016543 B = 0.007713 C = 0.006309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.113925 B = 3629.222786 C = 4437.007027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.089 4.089 3 C -0.102 4.102 4 H 0.115 0.885 5 C 0.470 3.530 6 O -0.485 6.485 7 O -0.363 6.363 8 C 0.035 3.965 9 C 0.471 3.529 10 O -0.565 6.565 11 N -0.421 5.421 12 C -0.363 4.363 13 H 0.100 0.900 14 C 0.091 3.909 15 N -0.764 5.764 16 Si 0.850 3.150 17 H -0.269 1.269 18 H -0.288 1.288 19 H -0.270 1.270 20 C 0.128 3.872 21 C -0.145 4.145 22 C -0.101 4.101 23 C -0.100 4.100 24 C -0.119 4.119 25 H 0.097 0.903 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.272 0.728 34 H 0.052 0.948 35 H 0.118 0.882 36 H 0.027 0.973 37 H 0.051 0.949 38 H 0.037 0.963 39 H 0.033 0.967 40 H 0.054 0.946 41 H 0.022 0.978 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.500 -4.617 -7.546 10.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.127 4.127 3 C -0.125 4.125 4 H 0.132 0.868 5 C 0.311 3.689 6 O -0.370 6.370 7 O -0.280 6.280 8 C -0.059 4.059 9 C 0.259 3.741 10 O -0.450 6.450 11 N -0.138 5.138 12 C -0.486 4.486 13 H 0.118 0.882 14 C -0.121 4.121 15 N -0.395 5.395 16 Si 0.673 3.327 17 H -0.194 1.194 18 H -0.214 1.214 19 H -0.196 1.196 20 C 0.024 3.976 21 C -0.183 4.183 22 C -0.139 4.139 23 C -0.138 4.138 24 C -0.157 4.157 25 H 0.116 0.884 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.135 0.865 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.041 0.959 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.390 -4.439 -6.861 9.789 hybrid contribution -0.453 0.209 -0.047 0.501 sum 4.936 -4.230 -6.908 9.486 Atomic orbital electron populations 1.22120 0.94348 1.01705 1.04390 1.21170 0.97622 0.91885 1.02054 1.21482 0.87626 1.00390 1.02958 0.86752 1.23564 0.88284 0.75726 0.81365 1.90720 1.81378 1.39333 1.25585 1.86505 1.18666 1.68061 1.54759 1.23206 0.79195 1.02777 1.00739 1.18953 0.85447 0.82125 0.87587 1.90455 1.52565 1.70264 1.31667 1.43527 1.48874 1.04546 1.16848 1.18786 1.25478 1.14748 0.89630 0.88235 1.25252 0.98988 0.93916 0.93905 1.70710 1.34126 1.04717 1.29975 0.87224 0.87261 0.77733 0.80475 1.19398 1.21430 1.19577 1.22095 0.94538 0.94236 0.86683 1.23437 1.01002 0.96274 0.97575 1.21804 0.97263 0.98234 0.96577 1.21799 0.95597 0.99847 0.96602 1.22930 0.96350 0.95907 1.00494 0.88445 0.93392 0.93242 0.91320 0.91491 0.92103 0.88426 0.92028 0.91550 0.93052 0.86470 0.95411 0.93011 0.94429 0.94800 0.92695 0.95930 0.84172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 9.35 37.16 0.35 -2.55 16 2 C -0.09 -1.50 5.37 -26.73 -0.14 -1.64 16 3 C -0.10 -1.98 2.15 -92.92 -0.20 -2.18 16 4 H 0.11 2.02 6.01 -51.93 -0.31 1.70 16 5 C 0.47 9.18 7.16 36.01 0.26 9.44 16 6 O -0.49 -11.20 15.78 -18.75 -0.30 -11.50 16 7 O -0.36 -5.77 10.49 -39.22 -0.41 -6.18 16 8 C 0.03 0.43 10.56 101.05 1.07 1.49 16 9 C 0.47 11.47 5.04 -10.99 -0.06 11.41 16 10 O -0.57 -15.42 14.03 5.55 0.08 -15.34 16 11 N -0.42 -10.47 2.69 -105.58 -0.28 -10.76 16 12 C -0.36 -9.73 7.86 -14.93 -0.12 -9.84 16 13 H 0.10 2.93 7.95 -52.49 -0.42 2.51 16 14 C 0.09 2.23 3.53 -17.47 -0.06 2.17 16 15 N -0.76 -17.47 6.32 55.50 0.35 -17.12 16 16 Si 0.85 19.21 29.69 -169.99 -5.05 14.16 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 18 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 C 0.13 2.81 3.04 -65.90 -0.20 2.61 16 21 C -0.14 -2.99 5.75 -25.03 -0.14 -3.13 16 22 C -0.10 -1.81 6.40 -25.61 -0.16 -1.97 16 23 C -0.10 -1.85 6.45 -25.62 -0.17 -2.01 16 24 C -0.12 -2.58 5.64 -25.07 -0.14 -2.73 16 25 H 0.10 2.06 5.22 -51.93 -0.27 1.79 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.07 1.16 8.02 -51.92 -0.42 0.74 16 30 H 0.06 0.75 8.13 -51.93 -0.42 0.32 16 31 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.77 8.13 -51.93 -0.42 0.34 16 33 H 0.27 5.87 8.31 -40.82 -0.34 5.53 16 34 H 0.05 1.05 5.44 -51.93 -0.28 0.76 16 35 H 0.12 2.68 3.84 -53.44 -0.21 2.47 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.14 3.43 4.65 -51.93 -0.24 3.19 16 LS Contribution 325.73 15.07 4.91 4.91 Total: -1.00 -29.23 325.73 -6.77 -36.00 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -6.35 Total: 4.75 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 0.28 Total: 1.06 kcal Atomic # 7 Polarization: -27.94 SS G_CDS: 0.07 Total: -27.87 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -0.63 Total: -33.02 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.05 Total: 14.16 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.23 -6.77 -36.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413483092.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.047 kcal (2) G-P(sol) polarization free energy of solvation -29.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds