Wall clock time and date at job start Tue Mar 31 2020 05:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47128 * 2 1 4 4 H 1.08997 * 109.46566 * 282.69837 * 3 2 1 5 5 C 1.50706 * 109.46884 * 162.70219 * 3 2 1 6 6 O 1.20828 * 119.99492 * 239.99626 * 5 3 2 7 7 O 1.34217 * 120.00128 * 59.99815 * 5 3 2 8 8 C 1.45202 * 117.00017 * 179.97438 * 7 5 3 9 9 C 1.50699 * 109.47148 * 42.69905 * 3 2 1 10 10 O 1.21292 * 119.99712 * 28.63502 * 9 3 2 11 11 N 1.34772 * 119.99805 * 208.63395 * 9 3 2 12 12 C 1.37100 * 119.99718 * 185.97564 * 11 9 3 13 13 H 1.07996 * 120.00123 * 36.39331 * 12 11 9 14 14 C 1.38950 * 119.99679 * 216.39073 * 12 11 9 15 15 N 1.31411 * 120.00528 * 303.61431 * 14 12 11 16 16 Si 1.86802 * 119.99483 * 123.61550 * 14 12 11 17 17 H 1.48498 * 109.47299 * 60.00253 * 16 14 12 18 18 H 1.48506 * 109.46877 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47241 * 299.99612 * 16 14 12 20 20 C 1.46499 * 120.00380 * 5.97151 * 11 9 3 21 21 C 1.54958 * 110.92228 * 114.42118 * 20 11 9 22 22 C 1.54269 * 104.15778 * 156.29692 * 21 20 11 23 23 C 1.53873 * 106.64108 * 336.45041 * 22 21 20 24 24 C 1.54261 * 106.60003 * 359.97276 * 23 22 21 25 25 H 1.08999 * 109.46946 * 301.73172 * 1 2 3 26 26 H 1.08993 * 109.47091 * 61.73489 * 1 2 3 27 27 H 1.09002 * 109.47016 * 181.73650 * 1 2 3 28 28 H 1.08999 * 109.47119 * 239.99696 * 2 1 3 29 29 H 1.09010 * 109.47017 * 119.99930 * 2 1 3 30 30 H 1.09005 * 109.47056 * 59.99795 * 8 7 5 31 31 H 1.09005 * 109.47583 * 180.02562 * 8 7 5 32 32 H 1.09004 * 109.47101 * 300.00150 * 8 7 5 33 33 H 0.96994 * 120.00046 * 180.02562 * 15 14 12 34 34 H 1.09004 * 110.66789 * 351.12029 * 20 11 9 35 35 H 1.09003 * 110.47957 * 37.65007 * 21 20 11 36 36 H 1.08998 * 110.53683 * 274.97591 * 21 20 11 37 37 H 1.09001 * 110.03531 * 217.13312 * 22 21 20 38 38 H 1.09001 * 110.02919 * 95.76215 * 22 21 20 39 39 H 1.08996 * 110.03054 * 119.26036 * 23 22 21 40 40 H 1.09004 * 110.03187 * 240.63855 * 23 22 21 41 41 H 1.08997 * 110.48945 * 142.29169 * 24 23 22 42 42 H 1.09002 * 110.48612 * 264.80078 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.9481 1.8603 -1.0025 5 6 3.4865 1.4639 0.4225 6 8 3.8197 2.0829 1.4052 7 8 4.4045 0.7953 -0.2928 8 6 5.7784 0.8607 0.1724 9 6 1.2230 2.2642 0.9635 10 8 0.7134 1.7368 1.9296 11 7 1.0586 3.5850 0.7517 12 6 0.4206 4.3554 1.6893 13 1 0.5590 4.1514 2.7407 14 6 -0.4042 5.3986 1.2866 15 7 0.0685 6.3481 0.5107 16 14 -2.1850 5.4514 1.8483 17 1 -2.2348 5.5067 3.3315 18 1 -2.8458 6.6567 1.2862 19 1 -2.8898 4.2334 1.3744 20 6 1.5618 4.1975 -0.4803 21 6 0.3947 4.7234 -1.3535 22 6 1.0405 5.8192 -2.2264 23 6 2.2910 6.3036 -1.4719 24 6 2.3619 5.4859 -0.1658 25 1 -0.3633 0.5405 0.8741 26 1 -0.3633 0.4866 -0.9051 27 1 -0.3633 -1.0272 0.0311 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8901 30 1 5.8400 0.4535 1.1817 31 1 6.4158 0.2794 -0.4939 32 1 6.1109 1.8988 0.1786 33 1 -0.5072 7.0765 0.2300 34 1 2.1736 3.4898 -1.0398 35 1 -0.3894 5.1480 -0.7266 36 1 -0.0056 3.9248 -1.9781 37 1 0.3437 6.6460 -2.3640 38 1 1.3249 5.4062 -3.1942 39 1 3.1824 6.1249 -2.0732 40 1 2.2015 7.3658 -1.2439 41 1 3.3965 5.2429 0.0766 42 1 1.8980 6.0350 0.6537 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413483092.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:54 Heat of formation + Delta-G solvation = -99.542747 kcal Electronic energy + Delta-G solvation = -24728.542751 eV Core-core repulsion = 21288.840382 eV Total energy + Delta-G solvation = -3439.702369 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.00925 -40.58885 -38.83948 -37.49183 -35.61389 -34.94517 -34.12777 -30.22447 -29.23914 -28.51795 -28.21511 -26.60337 -23.39366 -22.94962 -21.75946 -20.89637 -20.25939 -18.87998 -18.57487 -18.39816 -17.69185 -17.14084 -16.53336 -16.23368 -16.05496 -15.52909 -15.34798 -14.75988 -14.59348 -14.53580 -14.35363 -13.91703 -13.65405 -13.44560 -13.09589 -12.95739 -12.79083 -12.72661 -12.49308 -12.19701 -12.13258 -11.93072 -11.85039 -11.81366 -11.78192 -11.63303 -11.46581 -11.37781 -10.95287 -10.21131 -9.75202 -9.30015 -8.60497 -5.73159 1.05509 1.21765 1.39573 1.43478 1.55874 2.22443 2.27633 2.69966 3.03290 3.53880 3.82216 3.87647 3.97594 4.13257 4.20283 4.30416 4.31534 4.33767 4.51858 4.56163 4.61086 4.68218 4.84888 4.92959 4.94274 5.03643 5.04981 5.09587 5.21776 5.22837 5.23297 5.40693 5.41915 5.45447 5.61697 5.71262 5.89437 6.20876 6.25864 6.63331 6.66717 7.24011 7.51605 8.16053 8.27764 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.016543 B = 0.007713 C = 0.006309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.113925 B = 3629.222786 C = 4437.007027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.084 4.084 3 C -0.098 4.098 4 H 0.138 0.862 5 C 0.476 3.524 6 O -0.532 6.532 7 O -0.350 6.350 8 C 0.026 3.974 9 C 0.454 3.546 10 O -0.611 6.611 11 N -0.428 5.428 12 C -0.412 4.412 13 H 0.052 0.948 14 C 0.086 3.914 15 N -0.743 5.743 16 Si 0.896 3.104 17 H -0.283 1.283 18 H -0.262 1.262 19 H -0.287 1.287 20 C 0.124 3.876 21 C -0.147 4.147 22 C -0.093 4.093 23 C -0.093 4.093 24 C -0.121 4.121 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.113 0.887 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.145 0.855 32 H 0.057 0.943 33 H 0.284 0.716 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.041 0.959 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.011 0.989 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.075 -4.718 -11.016 13.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.122 4.122 3 C -0.121 4.121 4 H 0.156 0.844 5 C 0.319 3.681 6 O -0.421 6.421 7 O -0.266 6.266 8 C -0.067 4.067 9 C 0.244 3.756 10 O -0.499 6.499 11 N -0.145 5.145 12 C -0.535 4.535 13 H 0.070 0.930 14 C -0.129 4.129 15 N -0.372 5.372 16 Si 0.720 3.280 17 H -0.209 1.209 18 H -0.187 1.187 19 H -0.213 1.213 20 C 0.020 3.980 21 C -0.185 4.185 22 C -0.131 4.131 23 C -0.131 4.131 24 C -0.159 4.159 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.131 0.869 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.163 0.837 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.030 0.970 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.984 -4.510 -10.384 12.806 hybrid contribution -0.572 0.258 1.048 1.222 sum 5.413 -4.252 -9.336 11.599 Atomic orbital electron populations 1.22024 0.94768 1.02799 1.02633 1.21252 0.97201 0.90198 1.03566 1.21426 0.87180 1.01253 1.02199 0.84450 1.23522 0.88858 0.75047 0.80699 1.90712 1.82128 1.41565 1.27687 1.86479 1.19840 1.66616 1.53645 1.23622 0.77467 1.03593 1.02028 1.19796 0.85509 0.82319 0.87993 1.90417 1.54377 1.71210 1.33872 1.43653 1.48676 1.04792 1.17345 1.18313 1.29925 1.16957 0.88324 0.93050 1.25371 0.99833 0.93169 0.94536 1.70686 1.34551 1.03904 1.28055 0.86563 0.84379 0.77768 0.79339 1.20889 1.18656 1.21321 1.22292 0.95391 0.94520 0.85756 1.23364 0.99953 0.97583 0.97614 1.21776 0.96732 0.97490 0.97121 1.21749 0.97091 0.99239 0.94995 1.22835 0.95303 0.96284 1.01476 0.93053 0.92330 0.90531 0.86851 0.92695 0.92423 0.83706 0.92377 0.90338 0.91272 0.88894 0.94055 0.92345 0.91511 0.92385 0.92496 0.96991 0.87176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.54 9.35 71.98 0.67 -4.87 16 2 C -0.08 -2.70 5.37 30.60 0.16 -2.53 16 3 C -0.10 -3.76 2.15 -12.28 -0.03 -3.79 16 4 H 0.14 4.53 6.01 -2.39 -0.01 4.52 16 5 C 0.48 18.37 7.16 71.24 0.51 18.88 16 6 O -0.53 -25.28 15.78 21.96 0.35 -24.94 16 7 O -0.35 -10.29 10.49 -51.29 -0.54 -10.82 16 8 C 0.03 0.57 10.56 113.37 1.20 1.77 16 9 C 0.45 22.99 5.04 87.66 0.44 23.43 16 10 O -0.61 -35.61 14.03 -3.07 -0.04 -35.65 16 11 N -0.43 -22.07 2.69 -606.34 -1.63 -23.70 16 12 C -0.41 -23.39 7.86 84.04 0.66 -22.73 16 13 H 0.05 3.33 7.95 -2.91 -0.02 3.31 16 14 C 0.09 4.31 3.53 84.93 0.30 4.60 16 15 N -0.74 -33.63 6.32 21.66 0.14 -33.49 16 16 Si 0.90 40.28 29.69 68.60 2.04 42.32 16 17 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 18 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 19 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 20 C 0.12 5.33 3.04 46.31 0.14 5.47 16 21 C -0.15 -5.77 5.75 31.69 0.18 -5.59 16 22 C -0.09 -3.01 6.40 31.32 0.20 -2.81 16 23 C -0.09 -3.15 6.45 31.32 0.20 -2.95 16 24 C -0.12 -5.20 5.64 31.67 0.18 -5.03 16 25 H 0.05 2.25 5.22 -2.39 -0.01 2.23 16 26 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.08 2.09 8.14 -2.39 -0.02 2.08 16 28 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.05 1.87 8.02 -2.38 -0.02 1.85 16 30 H 0.06 1.34 8.13 -2.38 -0.02 1.32 16 31 H 0.15 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 33 H 0.28 11.75 8.31 -92.71 -0.77 10.98 16 34 H 0.07 2.69 5.44 -2.39 -0.01 2.68 16 35 H 0.09 4.13 3.84 -5.37 -0.02 4.11 16 36 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 41 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.11 5.48 4.65 -2.39 -0.01 5.47 16 Total: -1.00 -68.84 325.73 6.14 -62.70 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 1.00 Total: 19.71 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: 4.82 Total: 3.88 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -1.49 Total: -57.19 kcal Atomic # 8 Polarization: -71.18 SS G_CDS: -0.23 Total: -71.41 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.04 Total: 42.32 kcal Total: -68.84 6.14 -62.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413483092.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.840 kcal (2) G-P(sol) polarization free energy of solvation -68.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds