Wall clock time and date at job start Tue Mar 31 2020 06:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46785 * 2 1 4 4 C 1.50698 * 109.46908 * 240.00763 * 2 1 3 5 5 O 1.20834 * 119.99503 * 239.99697 * 4 2 1 6 6 O 1.34228 * 120.00790 * 59.99768 * 4 2 1 7 7 C 1.45193 * 117.00503 * 179.97438 * 6 4 2 8 8 C 1.53000 * 109.47258 * 59.99924 * 7 6 4 9 9 C 1.53004 * 109.47335 * 180.02562 * 7 6 4 10 10 C 1.53003 * 109.46848 * 300.00151 * 7 6 4 11 11 N 1.46493 * 109.47086 * 120.00690 * 2 1 3 12 12 C 1.34781 * 120.00004 * 239.00300 * 11 2 1 13 13 O 1.21685 * 119.99985 * 186.01900 * 12 11 2 14 14 C 1.46382 * 119.99896 * 5.73329 * 12 11 2 15 15 H 1.08004 * 119.99425 * 351.70555 * 14 12 11 16 16 C 1.40040 * 120.00182 * 171.70027 * 14 12 11 17 17 N 1.30681 * 119.99932 * 0.02562 * 16 14 12 18 18 Si 1.86793 * 120.00164 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47212 * 60.00167 * 18 16 14 20 20 H 1.48504 * 109.47033 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47247 * 300.00175 * 18 16 14 22 22 C 1.46494 * 120.00256 * 58.99402 * 11 2 1 23 23 C 1.53002 * 117.50122 * 196.25969 * 22 11 2 24 24 C 1.53004 * 117.49905 * 127.60391 * 22 11 2 25 25 H 1.08997 * 109.47478 * 299.99899 * 1 2 3 26 26 H 1.09009 * 109.47273 * 59.99476 * 1 2 3 27 27 H 1.08994 * 109.47037 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46699 * 60.00257 * 8 7 6 29 29 H 1.08999 * 109.47481 * 180.02562 * 8 7 6 30 30 H 1.08993 * 109.47131 * 300.00618 * 8 7 6 31 31 H 1.08995 * 109.46882 * 59.99898 * 9 7 6 32 32 H 1.08999 * 109.47174 * 180.02562 * 9 7 6 33 33 H 1.08999 * 109.46384 * 299.99900 * 9 7 6 34 34 H 1.09000 * 109.47299 * 60.00335 * 10 7 6 35 35 H 1.09012 * 109.46892 * 180.02562 * 10 7 6 36 36 H 1.08993 * 109.47303 * 299.99619 * 10 7 6 37 37 H 0.96998 * 120.00058 * 180.02562 * 17 16 14 38 38 H 1.08999 * 115.55326 * 341.93512 * 22 11 2 39 39 H 1.08997 * 117.49730 * 0.02562 * 23 22 11 40 40 H 1.09005 * 117.49860 * 145.02205 * 23 22 11 41 41 H 1.09002 * 117.50157 * 214.98406 * 24 22 11 42 42 H 1.09003 * 117.49854 * 0.02562 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 8 2.7270 -1.6927 -1.1197 6 8 1.7081 -0.2517 -2.4497 7 6 2.2276 -0.9854 -3.5898 8 6 1.7176 -2.4271 -3.5439 9 6 1.7565 -0.3181 -4.8835 10 6 3.7570 -0.9838 -3.5432 11 7 2.0183 -0.6907 1.1960 12 6 2.8097 -0.0418 2.0731 13 8 3.3043 -0.6443 3.0075 14 6 3.0792 1.3863 1.8981 15 1 2.7573 1.8902 0.9987 16 6 3.7542 2.0991 2.8968 17 7 4.1440 1.4892 3.9848 18 14 4.0974 3.9216 2.6737 19 1 2.8137 4.6516 2.5174 20 1 4.8197 4.4386 3.8639 21 1 4.9323 4.1235 1.4624 22 6 1.6464 -2.0867 1.4389 23 6 1.8524 -2.6372 2.8515 24 6 2.7760 -3.0811 1.7145 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5140 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.6281 -2.4282 -3.5770 29 1 2.1080 -2.9781 -4.3995 30 1 2.0535 -2.9022 -2.6222 31 1 2.1203 0.7088 -4.9159 32 1 2.1462 -0.8692 -5.7394 33 1 0.6670 -0.3190 -4.9167 34 1 4.0930 -1.4589 -2.6216 35 1 4.1471 -1.5343 -4.3995 36 1 4.1204 0.0433 -3.5760 37 1 4.6112 1.9829 4.6768 38 1 0.7836 -2.4476 0.8790 39 1 2.2643 -1.9606 3.6002 40 1 1.1253 -3.3606 3.2208 41 1 2.6564 -4.0963 1.3362 42 1 3.7960 -2.6966 1.7155 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413908106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:46 Heat of formation + Delta-G solvation = -80.294658 kcal Electronic energy + Delta-G solvation = -24131.097811 eV Core-core repulsion = 20692.230101 eV Total energy + Delta-G solvation = -3438.867709 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.54971 -38.61770 -36.57108 -34.87147 -34.29739 -33.55192 -32.47867 -29.34756 -27.39654 -27.32237 -26.41281 -24.53424 -22.09901 -21.57945 -21.30666 -19.28804 -18.75482 -16.95967 -16.69837 -16.02481 -15.82220 -15.48272 -15.00877 -14.37489 -14.04044 -13.82715 -13.63386 -13.32151 -12.90005 -12.78999 -12.49651 -12.30315 -12.17411 -12.00777 -11.82693 -11.77655 -11.58196 -11.43538 -11.19759 -11.13397 -11.01364 -10.96115 -10.46889 -10.32354 -10.15965 -10.10332 -9.94310 -9.43134 -9.39272 -8.89472 -7.45603 -7.11548 -6.26098 -4.74883 2.73601 2.93593 3.11349 3.16839 3.17890 3.99257 4.29524 4.43355 4.77397 4.80450 4.90447 4.95520 5.02866 5.41781 5.45895 5.54413 5.54954 5.68011 5.70706 5.74649 5.79208 5.86767 5.89518 5.92584 5.98359 5.99576 6.13458 6.24441 6.30691 6.38347 6.41794 6.50741 6.57941 6.88121 7.04427 7.33779 7.44503 7.52573 8.07921 8.22750 8.34178 8.92803 9.28527 10.47531 10.65400 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015884 B = 0.006409 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.382289 B = 4367.482307 C = 5409.628250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.158 3.842 3 H 0.139 0.861 4 C 0.446 3.554 5 O -0.485 6.485 6 O -0.356 6.356 7 C 0.115 3.885 8 C -0.180 4.180 9 C -0.138 4.138 10 C -0.183 4.183 11 N -0.593 5.593 12 C 0.563 3.437 13 O -0.555 6.555 14 C -0.548 4.548 15 H 0.071 0.929 16 C 0.091 3.909 17 N -0.764 5.764 18 Si 0.906 3.094 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.267 1.267 22 C 0.095 3.905 23 C -0.201 4.201 24 C -0.179 4.179 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.271 0.729 38 H 0.098 0.902 39 H 0.146 0.854 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.555 -2.054 -13.777 15.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.050 3.950 3 H 0.156 0.844 4 C 0.287 3.713 5 O -0.370 6.370 6 O -0.274 6.274 7 C 0.079 3.921 8 C -0.238 4.238 9 C -0.196 4.196 10 C -0.240 4.240 11 N -0.328 5.328 12 C 0.370 3.630 13 O -0.438 6.438 14 C -0.584 4.584 15 H 0.089 0.911 16 C -0.130 4.130 17 N -0.392 5.392 18 Si 0.730 3.270 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.192 1.192 22 C -0.010 4.010 23 C -0.238 4.238 24 C -0.218 4.218 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.115 0.885 39 H 0.163 0.837 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.949 -2.680 -13.058 14.597 hybrid contribution 0.263 0.667 -0.451 0.847 sum -5.686 -2.013 -13.508 14.794 Atomic orbital electron populations 1.22090 0.93478 1.02310 1.03235 1.20581 0.94916 0.98416 0.81058 0.84419 1.24876 0.78043 0.83693 0.84730 1.90560 1.34378 1.25393 1.86716 1.86578 1.70005 1.55959 1.14831 1.22059 0.93998 0.91585 0.84472 1.22461 1.01281 0.95619 1.04404 1.21825 1.02101 1.01360 0.94277 1.22476 0.94208 1.02884 1.04398 1.47402 1.54036 1.09952 1.21380 1.18221 0.76814 0.87556 0.80388 1.90426 1.52173 1.67832 1.33334 1.20923 1.39739 0.92627 1.05107 0.91085 1.25670 0.93376 0.99655 0.94279 1.69969 1.27342 1.36557 1.05337 0.86457 0.79256 0.82767 0.78528 1.19075 1.20444 1.19213 1.21043 0.97699 0.83149 0.99117 1.23974 1.02011 1.03326 0.94531 1.22982 0.97648 0.97626 1.03523 0.90513 0.91251 0.92747 0.92310 0.91606 0.89668 0.91547 0.90843 0.91699 0.89568 0.91642 0.92056 0.91829 0.88465 0.83706 0.91495 0.90962 0.88873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.11 37.16 0.34 -1.95 16 2 C 0.16 2.97 3.07 -69.09 -0.21 2.76 16 3 H 0.14 2.67 5.19 -51.93 -0.27 2.40 16 4 C 0.45 8.07 6.47 36.00 0.23 8.30 16 5 O -0.49 -9.73 10.70 -18.76 -0.20 -9.94 16 6 O -0.36 -5.55 9.79 -39.25 -0.38 -5.93 16 7 C 0.12 1.51 1.13 -90.62 -0.10 1.41 16 8 C -0.18 -2.24 8.37 37.16 0.31 -1.93 16 9 C -0.14 -1.36 8.85 37.16 0.33 -1.03 16 10 C -0.18 -2.47 8.37 37.16 0.31 -2.16 16 11 N -0.59 -13.44 2.49 -161.54 -0.40 -13.84 16 12 C 0.56 15.44 7.38 -12.98 -0.10 15.35 16 13 O -0.56 -16.89 10.82 5.20 0.06 -16.84 16 14 C -0.55 -14.71 8.85 -35.63 -0.32 -15.03 16 15 H 0.07 1.72 5.60 -52.48 -0.29 1.43 16 16 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 17 N -0.76 -21.99 11.86 55.55 0.66 -21.33 16 18 Si 0.91 19.42 29.56 -169.99 -5.02 14.39 16 19 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 20 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 C 0.10 2.01 4.83 -67.93 -0.33 1.68 16 23 C -0.20 -4.36 9.63 -26.70 -0.26 -4.61 16 24 C -0.18 -3.85 9.73 -26.69 -0.26 -4.11 16 25 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 26 H 0.07 0.87 8.11 -51.92 -0.42 0.45 16 27 H 0.05 0.78 6.87 -51.93 -0.36 0.42 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.29 5.89 -51.93 -0.31 0.98 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.09 1.44 5.89 -51.93 -0.31 1.13 16 35 H 0.06 0.73 8.14 -51.92 -0.42 0.30 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.27 7.13 8.29 -40.82 -0.34 6.79 16 38 H 0.10 1.81 6.93 -51.93 -0.36 1.45 16 39 H 0.15 3.76 5.21 -52.15 -0.27 3.49 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 42 H 0.09 2.33 7.60 -51.93 -0.39 1.94 16 LS Contribution 334.82 15.07 5.05 5.05 Total: -1.00 -31.79 334.82 -6.73 -38.52 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -6.34 Total: 8.92 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -0.14 Total: 0.99 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.26 Total: -35.17 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -0.53 Total: -32.70 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.79 -6.73 -38.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413908106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.770 kcal (2) G-P(sol) polarization free energy of solvation -31.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds