Wall clock time and date at job start Tue Mar 31 2020 06:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46896 * 2 1 4 4 C 1.50705 * 109.47217 * 119.99360 * 2 1 3 5 5 O 1.20821 * 119.99900 * 119.99951 * 4 2 1 6 6 O 1.34224 * 119.99928 * 300.00480 * 4 2 1 7 7 C 1.45205 * 116.99977 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.46984 * 59.99481 * 7 6 4 9 9 C 1.52998 * 109.47248 * 180.02562 * 7 6 4 10 10 C 1.53011 * 109.46840 * 299.99894 * 7 6 4 11 11 N 1.46503 * 109.47464 * 239.99665 * 2 1 3 12 12 C 1.34774 * 120.00051 * 119.99564 * 11 2 1 13 13 O 1.21688 * 120.00048 * 2.97911 * 12 11 2 14 14 C 1.46372 * 120.00172 * 182.96823 * 12 11 2 15 15 H 1.08000 * 119.99591 * 3.83634 * 14 12 11 16 16 C 1.40044 * 120.00330 * 183.83380 * 14 12 11 17 17 N 1.30674 * 119.99880 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 120.00280 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47255 * 59.99818 * 18 16 14 20 20 H 1.48499 * 109.47181 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46845 * 300.00050 * 18 16 14 22 22 C 1.46500 * 119.99588 * 299.99796 * 11 2 1 23 23 C 1.53004 * 117.49304 * 131.35955 * 22 11 2 24 24 C 1.52997 * 117.49881 * 62.70376 * 22 11 2 25 25 H 1.09010 * 109.46733 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46969 * 300.00224 * 1 2 3 27 27 H 1.08996 * 109.47043 * 60.01064 * 1 2 3 28 28 H 1.08998 * 109.47055 * 60.00802 * 8 7 6 29 29 H 1.08999 * 109.46574 * 179.97438 * 8 7 6 30 30 H 1.08994 * 109.47283 * 300.00177 * 8 7 6 31 31 H 1.09001 * 109.47630 * 59.99860 * 9 7 6 32 32 H 1.08999 * 109.46884 * 180.02562 * 9 7 6 33 33 H 1.09006 * 109.46955 * 299.99704 * 9 7 6 34 34 H 1.08997 * 109.46667 * 60.00023 * 10 7 6 35 35 H 1.09003 * 109.46658 * 180.02562 * 10 7 6 36 36 H 1.09001 * 109.46735 * 299.99921 * 10 7 6 37 37 H 0.96995 * 120.00136 * 180.02562 * 17 16 14 38 38 H 1.08998 * 115.55424 * 277.02223 * 22 11 2 39 39 H 1.08996 * 117.50065 * 359.97438 * 23 22 11 40 40 H 1.08999 * 117.49907 * 145.02202 * 23 22 11 41 41 H 1.09006 * 117.49793 * 214.97878 * 24 22 11 42 42 H 1.08998 * 117.49860 * 359.97438 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 8 2.7270 -1.6926 1.1198 6 8 1.7081 -0.2516 2.4496 7 6 2.2268 -0.9860 3.5898 8 6 3.7561 -0.9856 3.5437 9 6 1.7547 -0.3194 4.8835 10 6 1.7155 -2.4275 3.5434 11 7 2.0184 -0.6907 -1.1961 12 6 2.7932 -0.0357 -2.0833 13 8 3.1319 1.1124 -1.8643 14 6 3.2276 -0.7054 -3.3103 15 1 2.8769 -1.7020 -3.5346 16 6 4.0976 -0.0539 -4.1933 17 7 4.5222 1.1517 -3.9216 18 14 4.6513 -0.9083 -5.7594 19 1 3.4658 -1.2280 -6.5946 20 1 5.5634 -0.0131 -6.5157 21 1 5.3655 -2.1633 -5.4126 22 6 1.6646 -2.0933 -1.4278 23 6 1.1325 -2.4681 -2.8125 24 6 0.1829 -2.4268 -1.6126 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5136 -0.8900 28 1 4.1203 0.0412 3.5768 29 1 4.1454 -1.5366 4.3999 30 1 4.0920 -1.4608 2.6221 31 1 0.6652 -0.3201 4.9160 32 1 2.1445 -0.8705 5.7393 33 1 2.1186 0.7076 4.9167 34 1 2.0515 -2.9026 2.6217 35 1 2.1046 -2.9786 4.3995 36 1 0.6260 -2.4277 3.5761 37 1 5.1245 1.6031 -4.5334 38 1 2.2848 -2.8261 -0.9117 39 1 1.0453 -1.6711 -3.5509 40 1 1.4023 -3.4476 -3.2071 41 1 -0.1717 -3.3792 -1.2184 42 1 -0.5287 -1.6027 -1.5615 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413908107.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:49 Heat of formation + Delta-G solvation = -84.330415 kcal Electronic energy + Delta-G solvation = -24033.619557 eV Core-core repulsion = 20594.576844 eV Total energy + Delta-G solvation = -3439.042713 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.56202 -38.58403 -36.46750 -35.71525 -34.05968 -33.22960 -32.24430 -29.86742 -27.39112 -27.31989 -26.31997 -24.51542 -21.95921 -21.69941 -21.52139 -19.47008 -18.59025 -17.15177 -16.47857 -16.20330 -15.70191 -15.32718 -15.05687 -14.52754 -14.32575 -14.04035 -13.53422 -13.36367 -13.00065 -12.65556 -12.46882 -12.37677 -12.13033 -12.00427 -11.82611 -11.79295 -11.77355 -11.38117 -11.18359 -11.08088 -10.96925 -10.91324 -10.56463 -10.31823 -10.27013 -10.15463 -9.73037 -9.41046 -9.35131 -8.84833 -7.64677 -7.42159 -6.21602 -4.63678 2.74110 2.94870 3.15769 3.21075 3.22826 4.03868 4.31180 4.46093 4.52765 4.77789 4.80998 4.94820 5.03428 5.43637 5.46405 5.53999 5.55124 5.60626 5.63878 5.68350 5.68650 5.75768 5.85115 5.89854 5.97622 5.99178 6.03435 6.11062 6.27822 6.30930 6.41128 6.45395 6.50638 6.70176 6.87094 6.95251 7.47040 7.55274 8.02421 8.31553 8.38866 9.02162 9.33267 10.51962 10.71733 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.023245 B = 0.005182 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.290249 B = 5401.673976 C = 5794.538830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.158 3.842 3 H 0.127 0.873 4 C 0.455 3.545 5 O -0.494 6.494 6 O -0.356 6.356 7 C 0.115 3.885 8 C -0.183 4.183 9 C -0.139 4.139 10 C -0.180 4.180 11 N -0.597 5.597 12 C 0.560 3.440 13 O -0.577 6.577 14 C -0.538 4.538 15 H 0.088 0.912 16 C 0.086 3.914 17 N -0.768 5.768 18 Si 0.906 3.094 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.267 1.267 22 C 0.104 3.896 23 C -0.164 4.164 24 C -0.216 4.216 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.269 0.731 38 H 0.104 0.896 39 H 0.114 0.886 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.580 -6.032 11.378 14.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.051 3.949 3 H 0.145 0.855 4 C 0.297 3.703 5 O -0.380 6.380 6 O -0.273 6.273 7 C 0.078 3.922 8 C -0.240 4.240 9 C -0.196 4.196 10 C -0.237 4.237 11 N -0.335 5.335 12 C 0.368 3.632 13 O -0.459 6.459 14 C -0.574 4.574 15 H 0.106 0.894 16 C -0.134 4.134 17 N -0.396 5.396 18 Si 0.731 3.269 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.192 1.192 22 C -0.001 4.001 23 C -0.201 4.201 24 C -0.254 4.254 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.121 0.879 39 H 0.132 0.868 40 H 0.109 0.891 41 H 0.104 0.896 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.027 -5.523 11.433 14.512 hybrid contribution 0.475 -0.621 -0.567 0.966 sum -6.552 -6.144 10.867 14.098 Atomic orbital electron populations 1.22341 0.93705 1.03099 1.02721 1.20185 0.94576 0.98578 0.81596 0.85543 1.24781 0.77527 0.83398 0.84622 1.90499 1.34874 1.25805 1.86819 1.86585 1.69986 1.55889 1.14858 1.22073 0.94006 0.91624 0.84474 1.22476 0.94219 1.02902 1.04386 1.21827 1.02104 1.01377 0.94268 1.22463 1.01322 0.95566 1.04371 1.47488 1.55374 1.10141 1.20471 1.18368 0.76461 0.85531 0.82877 1.90599 1.58824 1.18671 1.77835 1.21290 1.29233 1.03211 1.03683 0.89439 1.25786 0.94634 0.94289 0.98694 1.70015 1.24296 1.11153 1.34184 0.86449 0.79090 0.79817 0.81565 1.19144 1.20631 1.19227 1.21210 0.93582 0.85391 0.99943 1.23278 1.01790 1.02801 0.92246 1.23638 0.94391 1.02372 1.04966 0.91170 0.91604 0.91078 0.92085 0.91579 0.89596 0.91671 0.90803 0.91573 0.89679 0.91582 0.92259 0.92069 0.87864 0.86809 0.89137 0.89614 0.88301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 7.97 37.16 0.30 -2.23 16 2 C 0.16 3.16 3.16 -69.08 -0.22 2.94 16 3 H 0.13 2.80 6.90 -51.93 -0.36 2.45 16 4 C 0.46 8.61 6.46 36.01 0.23 8.84 16 5 O -0.49 -10.10 10.25 -18.75 -0.19 -10.29 16 6 O -0.36 -5.83 9.79 -39.24 -0.38 -6.21 16 7 C 0.11 1.55 1.13 -90.61 -0.10 1.45 16 8 C -0.18 -2.56 8.37 37.16 0.31 -2.25 16 9 C -0.14 -1.42 8.85 37.16 0.33 -1.09 16 10 C -0.18 -2.27 8.37 37.16 0.31 -1.96 16 11 N -0.60 -13.68 2.48 -161.53 -0.40 -14.08 16 12 C 0.56 15.76 7.52 -12.99 -0.10 15.66 16 13 O -0.58 -18.34 14.36 5.20 0.07 -18.26 16 14 C -0.54 -14.80 7.82 -35.63 -0.28 -15.08 16 15 H 0.09 2.18 4.54 -52.49 -0.24 1.94 16 16 C 0.09 2.36 5.50 -17.37 -0.10 2.26 16 17 N -0.77 -22.76 11.84 55.55 0.66 -22.11 16 18 Si 0.91 19.97 29.56 -169.99 -5.02 14.95 16 19 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 22 C 0.10 2.07 4.66 -67.93 -0.32 1.75 16 23 C -0.16 -2.94 7.72 -26.69 -0.21 -3.14 16 24 C -0.22 -3.42 8.67 -26.70 -0.23 -3.65 16 25 H 0.07 1.03 5.21 -51.92 -0.27 0.76 16 26 H 0.07 0.89 8.11 -51.93 -0.42 0.47 16 27 H 0.07 1.14 8.09 -51.93 -0.42 0.72 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 1.47 5.89 -51.93 -0.31 1.16 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 1.29 5.89 -51.93 -0.31 0.98 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.27 7.27 8.29 -40.82 -0.34 6.94 16 38 H 0.10 2.12 7.25 -51.93 -0.38 1.74 16 39 H 0.11 2.28 6.79 -51.93 -0.35 1.93 16 40 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.10 1.53 5.73 -51.93 -0.30 1.23 16 LS Contribution 331.76 15.07 5.00 5.00 Total: -1.00 -33.20 331.76 -6.62 -39.82 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.28 Total: 7.66 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -0.07 Total: 3.52 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.26 Total: -36.18 kcal Atomic # 8 Polarization: -34.26 SS G_CDS: -0.50 Total: -34.76 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.20 -6.62 -39.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413908107.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.508 kcal (2) G-P(sol) polarization free energy of solvation -33.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds