Wall clock time and date at job start Tue Mar 31 2020 06:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34234 * 116.99562 * 2 1 4 4 O 1.20827 * 120.00003 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99937 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.47153 * 180.02562 * 5 3 2 7 7 C 1.37097 * 119.99600 * 268.24030 * 6 5 3 8 8 H 1.07996 * 120.00144 * 140.25944 * 7 6 5 9 9 C 1.38953 * 119.99836 * 320.25186 * 7 6 5 10 10 N 1.31411 * 119.99758 * 163.24676 * 9 7 6 11 11 Si 1.86799 * 120.00405 * 343.24443 * 9 7 6 12 12 H 1.48496 * 109.46913 * 95.49622 * 11 9 7 13 13 H 1.48495 * 109.47365 * 215.50068 * 11 9 7 14 14 H 1.48496 * 109.46799 * 335.50150 * 11 9 7 15 15 C 1.34766 * 120.00149 * 88.23696 * 6 5 3 16 16 O 1.21295 * 120.00323 * 5.25286 * 15 6 5 17 17 C 1.50703 * 120.00319 * 185.25367 * 15 6 5 18 18 H 1.09007 * 109.46651 * 27.13817 * 17 15 6 19 19 C 1.52998 * 109.47045 * 267.14240 * 17 15 6 20 20 C 1.53001 * 109.47137 * 179.97438 * 19 17 15 21 21 C 1.53001 * 109.47287 * 59.99622 * 20 19 17 22 22 C 1.52994 * 109.47002 * 300.00287 * 21 20 19 23 23 C 1.52991 * 109.47618 * 147.13758 * 17 15 6 24 24 H 1.08999 * 109.47146 * 60.00007 * 23 17 15 25 25 C 1.52998 * 109.47306 * 300.00322 * 23 17 15 26 26 H 1.09005 * 109.47681 * 299.99885 * 1 2 3 27 27 H 1.09006 * 109.47079 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47656 * 60.00090 * 1 2 3 29 29 H 1.09002 * 109.47130 * 300.00271 * 5 3 2 30 30 H 1.09003 * 109.46852 * 60.00011 * 5 3 2 31 31 H 0.97006 * 120.00155 * 180.02562 * 10 9 7 32 32 H 1.08994 * 109.47103 * 299.99099 * 19 17 15 33 33 H 1.08998 * 109.47525 * 59.99977 * 19 17 15 34 34 H 1.09007 * 109.46901 * 299.99786 * 20 19 17 35 35 H 1.08995 * 109.47386 * 180.02562 * 20 19 17 36 36 H 1.08993 * 109.47101 * 180.02562 * 21 20 19 37 37 H 1.08999 * 109.47101 * 59.99932 * 21 20 19 38 38 H 1.09000 * 109.47809 * 299.99686 * 22 21 20 39 39 H 1.09007 * 109.46997 * 179.97438 * 22 21 20 40 40 H 1.09007 * 109.47186 * 59.99463 * 25 23 17 41 41 H 1.08997 * 109.47286 * 179.97438 * 25 23 17 42 42 H 1.09002 * 109.47393 * 300.00301 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4031 2.2094 0.0005 5 6 3.5662 1.2750 0.0006 6 7 3.9815 2.6800 0.0011 7 6 4.2112 3.3272 -1.1855 8 1 3.8944 4.3519 -1.3118 9 6 4.8518 2.6648 -2.2255 10 7 4.7853 3.1420 -3.4481 11 14 5.8074 1.0961 -1.8858 12 1 4.9414 -0.0794 -2.1563 13 1 7.0022 1.0439 -2.7661 14 1 6.2383 1.0770 -0.4648 15 6 4.1376 3.3361 1.1678 16 8 4.0277 2.7399 2.2184 17 6 4.4489 4.8106 1.1674 18 1 4.0520 5.2654 0.2597 19 6 5.9647 5.0119 1.2179 20 6 6.2808 6.5089 1.2168 21 6 5.6379 7.1668 2.4394 22 6 4.1221 6.9655 2.3889 23 6 3.8061 5.4680 2.3903 24 1 4.2030 5.0132 3.2979 25 6 2.2903 5.2667 2.3399 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 3.9556 0.7811 0.8908 30 1 3.9563 0.7808 -0.8892 31 1 5.2322 2.6794 -4.1743 32 1 6.3616 4.5572 2.1254 33 1 6.4227 4.5437 0.3466 34 1 5.8839 6.9634 0.3089 35 1 7.3606 6.6523 1.2523 36 1 5.8627 8.2333 2.4384 37 1 6.0347 6.7123 3.3473 38 1 3.7252 7.4199 1.4812 39 1 3.6642 7.4338 3.2603 40 1 2.0652 4.2001 2.3402 41 1 1.8324 5.7346 3.2113 42 1 1.8933 5.7214 1.4322 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424685636.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:24 Heat of formation + Delta-G solvation = -130.619862 kcal Electronic energy + Delta-G solvation = -24256.397171 eV Core-core repulsion = 20815.347197 eV Total energy + Delta-G solvation = -3441.049974 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.14799 -39.34636 -37.31658 -35.85936 -34.85581 -32.13831 -31.98838 -30.79631 -28.76539 -26.72951 -25.90922 -24.88716 -22.73693 -21.11860 -20.71872 -19.50490 -18.91452 -17.40101 -17.12034 -16.62661 -15.84976 -15.49727 -15.23926 -14.59769 -14.27494 -13.91054 -13.80881 -13.66757 -13.28059 -13.06963 -12.83127 -12.52721 -12.21775 -12.02959 -11.86716 -11.72812 -11.55818 -11.42135 -11.08135 -11.03053 -10.77569 -10.55789 -10.43264 -10.35864 -10.17627 -10.01858 -9.89161 -9.76246 -9.55206 -9.27657 -8.59343 -7.94885 -6.51884 -4.18598 2.83078 2.95965 3.00143 3.16905 3.19488 3.75486 4.01784 4.25408 4.86088 5.10503 5.15022 5.21383 5.35271 5.42837 5.43590 5.55987 5.65006 5.66353 5.77209 5.79632 5.86818 5.89893 5.96618 5.99401 6.01500 6.18638 6.23509 6.32788 6.46411 6.50723 6.53274 6.61309 6.68493 6.80651 6.83255 6.89798 6.99787 7.19225 7.98719 8.16687 8.38009 8.86388 9.21899 9.53269 10.58378 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.007829 C = 0.005825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.965845 B = 3575.666909 C = 4805.896387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.370 6.370 3 C 0.448 3.552 4 O -0.488 6.488 5 C 0.107 3.893 6 N -0.454 5.454 7 C -0.336 4.336 8 H 0.109 0.891 9 C 0.065 3.935 10 N -0.859 5.859 11 Si 0.862 3.138 12 H -0.270 1.270 13 H -0.282 1.282 14 H -0.256 1.256 15 C 0.510 3.490 16 O -0.590 6.590 17 C -0.081 4.081 18 H 0.097 0.903 19 C -0.102 4.102 20 C -0.115 4.115 21 C -0.118 4.118 22 C -0.112 4.112 23 C -0.074 4.074 24 H 0.074 0.926 25 C -0.145 4.145 26 H 0.058 0.942 27 H 0.094 0.906 28 H 0.059 0.941 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.276 0.724 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.045 0.955 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.045 0.947 6.693 6.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.288 3.712 4 O -0.373 6.373 5 C -0.019 4.019 6 N -0.175 5.175 7 C -0.463 4.463 8 H 0.126 0.874 9 C -0.142 4.142 10 N -0.494 5.494 11 Si 0.689 3.311 12 H -0.197 1.197 13 H -0.208 1.208 14 H -0.180 1.180 15 C 0.300 3.700 16 O -0.474 6.474 17 C -0.102 4.102 18 H 0.115 0.885 19 C -0.140 4.140 20 C -0.153 4.153 21 C -0.156 4.156 22 C -0.149 4.149 23 C -0.093 4.093 24 H 0.092 0.908 25 C -0.202 4.202 26 H 0.076 0.924 27 H 0.113 0.887 28 H 0.078 0.922 29 H 0.129 0.871 30 H 0.120 0.880 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.283 0.955 6.987 7.168 hybrid contribution 0.124 -0.881 -0.344 0.954 sum -1.159 0.074 6.644 6.744 Atomic orbital electron populations 1.23134 0.77577 1.02822 1.02238 1.86527 1.22657 1.34584 1.84929 1.24806 0.92871 0.81211 0.72269 1.90609 1.66568 1.36199 1.43907 1.21362 0.86765 0.89038 1.04702 1.43449 1.59011 1.08139 1.06899 1.19079 1.38278 1.00159 0.88803 0.87356 1.25352 0.95966 0.98069 0.94826 1.69705 1.40249 1.40391 0.99060 0.87131 0.80725 0.83205 0.79999 1.19749 1.20794 1.17980 1.20483 0.77248 0.89591 0.82642 1.90529 1.55482 1.69560 1.31820 1.21097 0.96836 0.92440 0.99858 0.88492 1.21353 0.94314 0.95957 1.02422 1.21510 0.99694 0.95818 0.98271 1.21540 0.95795 0.99645 0.98593 1.21598 0.95755 0.96096 1.01486 1.20976 0.95607 0.94491 0.98213 0.90780 1.21804 0.95277 1.02501 1.00601 0.92362 0.88749 0.92181 0.87067 0.88008 0.91359 0.92346 0.90647 0.91684 0.92344 0.92584 0.92289 0.91977 0.92428 0.92038 0.93592 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.55 101.05 1.07 1.59 16 2 O -0.37 -6.95 10.57 -39.27 -0.41 -7.37 16 3 C 0.45 9.92 8.02 36.01 0.29 10.21 16 4 O -0.49 -11.91 16.16 -18.75 -0.30 -12.21 16 5 C 0.11 2.40 4.68 -5.19 -0.02 2.37 16 6 N -0.45 -10.94 1.66 -116.09 -0.19 -11.13 16 7 C -0.34 -8.61 9.11 -14.93 -0.14 -8.75 16 8 H 0.11 2.95 6.53 -52.49 -0.34 2.61 16 9 C 0.07 1.67 5.37 -17.47 -0.09 1.58 16 10 N -0.86 -23.23 13.96 55.50 0.77 -22.45 16 11 Si 0.86 19.37 24.77 -169.99 -4.21 15.16 16 12 H -0.27 -5.82 6.76 56.52 0.38 -5.44 16 13 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 14 H -0.26 -5.70 7.06 56.52 0.40 -5.30 16 15 C 0.51 11.78 5.63 -10.99 -0.06 11.72 16 16 O -0.59 -14.49 15.15 5.54 0.08 -14.41 16 17 C -0.08 -1.60 1.47 -91.78 -0.13 -1.74 16 18 H 0.10 2.03 6.20 -51.92 -0.32 1.71 16 19 C -0.10 -1.81 5.19 -26.73 -0.14 -1.95 16 20 C -0.12 -1.67 5.92 -26.73 -0.16 -1.83 16 21 C -0.12 -1.54 5.92 -26.73 -0.16 -1.70 16 22 C -0.11 -1.58 5.20 -26.71 -0.14 -1.72 16 23 C -0.07 -1.28 1.92 -90.60 -0.17 -1.46 16 24 H 0.07 1.35 7.85 -51.93 -0.41 0.94 16 25 C -0.14 -2.58 8.93 37.16 0.33 -2.25 16 26 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 27 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 29 H 0.11 2.34 7.41 -51.93 -0.38 1.96 16 30 H 0.10 2.27 3.23 -51.93 -0.17 2.10 16 31 H 0.28 6.96 8.31 -40.82 -0.34 6.63 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.73 8.14 -51.92 -0.42 0.30 16 40 H 0.06 1.29 6.75 -51.93 -0.35 0.94 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 333.22 15.07 5.02 5.02 Total: -1.00 -29.66 333.22 -5.40 -35.06 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.63 Total: 6.25 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 0.47 Total: 6.07 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.58 Total: -33.58 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.63 Total: -33.99 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.21 Total: 15.16 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.66 -5.40 -35.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424685636.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.559 kcal (2) G-P(sol) polarization free energy of solvation -29.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds