Wall clock time and date at job start Tue Mar 31 2020 06:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 117.00039 * 2 1 4 4 O 1.20824 * 119.99814 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00319 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.47054 * 180.02562 * 5 3 2 7 7 C 1.37095 * 120.00399 * 270.00469 * 6 5 3 8 8 H 1.08003 * 120.00400 * 202.64575 * 7 6 5 9 9 C 1.38953 * 119.99669 * 22.63846 * 7 6 5 10 10 N 1.31410 * 120.00391 * 351.93578 * 9 7 6 11 11 Si 1.86809 * 119.99585 * 171.93671 * 9 7 6 12 12 H 1.48499 * 109.47068 * 60.00418 * 11 9 7 13 13 H 1.48504 * 109.46685 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47036 * 300.00167 * 11 9 7 15 15 C 1.34777 * 119.99756 * 90.00467 * 6 5 3 16 16 O 1.21294 * 120.00286 * 4.69226 * 15 6 5 17 17 C 1.50704 * 120.00075 * 184.69357 * 15 6 5 18 18 H 1.09000 * 109.46706 * 307.78802 * 17 15 6 19 19 C 1.53003 * 109.46963 * 67.78331 * 17 15 6 20 20 C 1.53001 * 109.47119 * 60.00423 * 19 17 15 21 21 C 1.53002 * 109.46940 * 59.99675 * 20 19 17 22 22 C 1.53000 * 109.47254 * 299.99611 * 21 20 19 23 23 C 1.52998 * 109.47332 * 187.78459 * 17 15 6 24 24 H 1.09001 * 109.47276 * 179.97438 * 23 17 15 25 25 C 1.53008 * 109.47010 * 59.99746 * 23 17 15 26 26 H 1.08997 * 109.47138 * 59.99772 * 1 2 3 27 27 H 1.08998 * 109.46846 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47002 * 299.99677 * 1 2 3 29 29 H 1.09003 * 109.46456 * 60.00346 * 5 3 2 30 30 H 1.08997 * 109.47221 * 300.00421 * 5 3 2 31 31 H 0.96996 * 120.00001 * 185.01213 * 10 9 7 32 32 H 1.09002 * 109.47193 * 300.00104 * 19 17 15 33 33 H 1.09001 * 109.46710 * 180.02562 * 19 17 15 34 34 H 1.08998 * 109.46827 * 299.99928 * 20 19 17 35 35 H 1.09001 * 109.47136 * 179.97438 * 20 19 17 36 36 H 1.09008 * 109.46657 * 180.02562 * 21 20 19 37 37 H 1.08998 * 109.47155 * 60.00453 * 21 20 19 38 38 H 1.08998 * 109.47728 * 300.00492 * 22 21 20 39 39 H 1.08994 * 109.47009 * 180.02562 * 22 21 20 40 40 H 1.09001 * 109.47028 * 300.00062 * 25 23 17 41 41 H 1.08994 * 109.47045 * 179.97438 * 25 23 17 42 42 H 1.09001 * 109.46581 * 60.00172 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 7 3.9816 2.6799 0.0011 7 6 4.1763 3.3376 -1.1859 8 1 4.8101 4.2114 -1.2215 9 6 3.5583 2.8800 -2.3432 10 7 2.9181 1.7323 -2.3365 11 14 3.6374 3.8963 -3.9087 12 1 5.0558 4.0803 -4.3082 13 1 2.9045 3.1937 -4.9924 14 1 3.0143 5.2228 -3.6696 15 6 4.1723 3.3257 1.1685 16 8 4.0833 2.7224 2.2170 17 6 4.4960 4.7976 1.1713 18 1 5.3418 4.9848 0.5097 19 6 3.2809 5.5879 0.6816 20 6 2.0936 5.3252 1.6101 21 6 2.4501 5.7664 3.0311 22 6 3.6652 4.9759 3.5208 23 6 4.8525 5.2388 2.5923 24 1 5.0870 6.3032 2.5942 25 6 6.0676 4.4483 3.0820 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.9563 0.7807 -0.8892 30 1 3.9557 0.7810 0.8908 31 1 2.5493 1.3780 -3.1607 32 1 3.0270 5.2736 -0.3308 33 1 3.5152 6.6524 0.6832 34 1 1.8595 4.2607 1.6082 35 1 1.2280 5.8886 1.2615 36 1 1.6044 5.5787 3.6927 37 1 2.6842 6.8309 3.0331 38 1 3.4311 3.9114 3.5189 39 1 3.9188 5.2899 4.5333 40 1 5.8334 3.3838 3.0800 41 1 6.3218 4.7630 4.0941 42 1 6.9134 4.6356 2.4204 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424685638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:27 Heat of formation + Delta-G solvation = -124.894702 kcal Electronic energy + Delta-G solvation = -24979.067931 eV Core-core repulsion = 21538.266218 eV Total energy + Delta-G solvation = -3440.801712 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.94943 -38.95562 -36.68575 -35.23456 -34.55179 -31.95333 -31.51683 -30.47018 -28.26287 -26.34799 -25.74775 -24.66655 -22.35399 -20.83769 -20.38730 -19.63100 -18.86539 -16.74427 -16.44386 -15.99212 -15.44570 -15.17070 -14.69889 -14.44462 -14.10857 -13.99570 -13.54636 -13.17732 -12.77745 -12.66782 -12.44076 -12.31766 -11.87391 -11.58558 -11.46010 -11.27251 -11.25775 -11.17370 -10.89261 -10.74659 -10.57531 -10.55046 -10.46941 -10.12807 -10.03142 -9.77060 -9.46642 -9.37956 -9.27839 -8.95726 -8.14498 -7.88997 -6.42599 -4.04090 3.09035 3.17925 3.18239 3.53442 3.76861 4.04729 4.11921 4.72689 5.02506 5.32398 5.45278 5.45935 5.71719 5.78294 5.79131 5.85130 5.97089 6.03851 6.04615 6.16639 6.18724 6.23548 6.29126 6.35200 6.44785 6.45792 6.49895 6.62716 6.70833 6.82093 6.89856 6.94840 7.02298 7.07193 7.15986 7.26643 7.35355 7.55847 7.72044 8.27929 9.00555 9.17982 9.41285 9.81685 10.58631 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014583 B = 0.008560 C = 0.006741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.594468 B = 3270.192039 C = 4152.990267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.374 6.374 3 C 0.490 3.510 4 O -0.512 6.512 5 C 0.153 3.847 6 N -0.434 5.434 7 C -0.320 4.320 8 H 0.101 0.899 9 C 0.042 3.958 10 N -0.886 5.886 11 Si 0.927 3.073 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.486 3.514 16 O -0.592 6.592 17 C -0.083 4.083 18 H 0.080 0.920 19 C -0.105 4.105 20 C -0.116 4.116 21 C -0.114 4.114 22 C -0.130 4.130 23 C -0.066 4.066 24 H 0.057 0.943 25 C -0.153 4.153 26 H 0.053 0.947 27 H 0.084 0.916 28 H 0.048 0.952 29 H 0.136 0.864 30 H 0.075 0.925 31 H 0.272 0.728 32 H 0.087 0.913 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.047 0.953 38 H 0.105 0.895 39 H 0.042 0.958 40 H 0.081 0.919 41 H 0.041 0.959 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.374 2.151 3.540 4.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.292 6.292 3 C 0.332 3.668 4 O -0.397 6.397 5 C 0.028 3.972 6 N -0.152 5.152 7 C -0.447 4.447 8 H 0.119 0.881 9 C -0.161 4.161 10 N -0.526 5.526 11 Si 0.754 3.246 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.197 1.197 15 C 0.276 3.724 16 O -0.479 6.479 17 C -0.104 4.104 18 H 0.098 0.902 19 C -0.143 4.143 20 C -0.154 4.154 21 C -0.152 4.152 22 C -0.167 4.167 23 C -0.085 4.085 24 H 0.075 0.925 25 C -0.210 4.210 26 H 0.071 0.929 27 H 0.103 0.897 28 H 0.067 0.933 29 H 0.154 0.846 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.123 0.877 39 H 0.061 0.939 40 H 0.099 0.901 41 H 0.060 0.940 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.057 2.067 3.887 4.403 hybrid contribution -0.368 0.625 -1.183 1.388 sum -0.425 2.692 2.703 3.839 Atomic orbital electron populations 1.22896 0.79064 1.01667 1.01403 1.86469 1.21341 1.35705 1.85674 1.23996 0.92361 0.80383 0.70022 1.90491 1.66663 1.36332 1.46260 1.20622 0.86899 0.85894 1.03800 1.43347 1.58209 1.08238 1.05433 1.19574 1.27599 1.12528 0.84977 0.88122 1.25237 0.94525 0.96313 1.00005 1.69585 1.36600 1.17936 1.28500 0.85980 0.78346 0.79882 0.80381 1.19902 1.20938 1.19714 1.20121 0.80615 0.88629 0.83034 1.90366 1.57839 1.68526 1.31164 1.21034 0.99095 0.93457 0.96781 0.90224 1.21425 0.93942 0.97813 1.01128 1.21477 0.97188 1.02544 0.94144 1.21518 0.97923 0.98811 0.96932 1.21931 0.94000 1.04213 0.96520 1.20843 0.95481 0.98003 0.94136 0.92467 1.21973 0.96601 1.03250 0.99156 0.92856 0.89746 0.93300 0.84635 0.90744 0.91640 0.89475 0.93042 0.90807 0.93302 0.93247 0.93397 0.87697 0.93932 0.90068 0.94001 0.93995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.56 101.05 1.07 1.84 16 2 O -0.37 -8.12 10.57 -39.27 -0.41 -8.53 16 3 C 0.49 11.95 5.91 36.01 0.21 12.16 16 4 O -0.51 -13.65 15.63 -18.75 -0.29 -13.94 16 5 C 0.15 3.64 5.28 -5.19 -0.03 3.61 16 6 N -0.43 -10.46 2.11 -116.09 -0.25 -10.71 16 7 C -0.32 -7.69 7.39 -14.93 -0.11 -7.80 16 8 H 0.10 2.29 6.25 -52.48 -0.33 1.96 16 9 C 0.04 1.02 5.41 -17.47 -0.09 0.92 16 10 N -0.89 -22.21 8.20 55.50 0.46 -21.75 16 11 Si 0.93 19.36 29.56 -169.99 -5.03 14.33 16 12 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 13 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 14 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 15 C 0.49 11.12 5.09 -10.98 -0.06 11.06 16 16 O -0.59 -14.28 10.98 5.55 0.06 -14.22 16 17 C -0.08 -1.62 1.74 -91.77 -0.16 -1.78 16 18 H 0.08 1.52 7.07 -51.93 -0.37 1.15 16 19 C -0.11 -2.04 5.26 -26.73 -0.14 -2.18 16 20 C -0.12 -2.27 5.70 -26.73 -0.15 -2.42 16 21 C -0.11 -1.95 5.92 -26.73 -0.16 -2.11 16 22 C -0.13 -2.32 4.93 -26.73 -0.13 -2.46 16 23 C -0.07 -1.15 2.46 -90.62 -0.22 -1.38 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 25 C -0.15 -2.58 8.90 37.16 0.33 -2.25 16 26 H 0.05 0.97 8.13 -51.93 -0.42 0.54 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.05 0.84 8.13 -51.93 -0.42 0.41 16 29 H 0.14 3.27 6.28 -51.93 -0.33 2.94 16 30 H 0.07 1.69 7.36 -51.93 -0.38 1.31 16 31 H 0.27 6.67 8.32 -40.82 -0.34 6.33 16 32 H 0.09 1.90 6.32 -51.93 -0.33 1.57 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.07 1.73 6.90 -51.93 -0.36 1.37 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.80 8.14 -51.92 -0.42 0.37 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 2.22 5.24 -51.93 -0.27 1.95 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 1.58 5.80 -51.93 -0.30 1.28 16 41 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 322.02 15.07 4.85 4.85 Total: -1.00 -27.80 322.02 -6.70 -34.50 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -6.45 Total: 8.24 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: 0.36 Total: 7.23 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: 0.21 Total: -32.46 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -0.65 Total: -36.69 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.80 -6.70 -34.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424685638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.398 kcal (2) G-P(sol) polarization free energy of solvation -27.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds