Wall clock time and date at job start Tue Mar 31 2020 05:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46689 * 2 1 4 4 H 1.08997 * 109.47177 * 305.96180 * 3 2 1 5 5 C 1.50700 * 109.46600 * 185.96329 * 3 2 1 6 6 O 1.20831 * 119.99528 * 239.99847 * 5 3 2 7 7 O 1.34225 * 120.00034 * 60.00527 * 5 3 2 8 8 C 1.45198 * 116.99783 * 179.97438 * 7 5 3 9 9 C 1.50695 * 109.47007 * 65.96708 * 3 2 1 10 10 O 1.21283 * 120.00045 * 34.47006 * 9 3 2 11 11 N 1.34781 * 120.00130 * 214.47264 * 9 3 2 12 12 C 1.46493 * 120.00017 * 184.91071 * 11 9 3 13 13 C 1.50707 * 109.47515 * 270.27388 * 12 11 9 14 14 H 1.08000 * 119.99047 * 0.02562 * 13 12 11 15 15 C 1.37868 * 120.00225 * 180.02562 * 13 12 11 16 16 N 1.31520 * 120.00010 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00107 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47279 * 89.99755 * 17 15 13 19 19 H 1.48497 * 109.47438 * 209.99922 * 17 15 13 20 20 H 1.48499 * 109.46780 * 329.99994 * 17 15 13 21 21 C 1.46504 * 119.99344 * 5.18954 * 11 9 3 22 22 C 1.53005 * 109.46568 * 266.17172 * 21 11 9 23 23 C 1.53002 * 117.49816 * 243.74907 * 22 21 11 24 24 C 1.53005 * 117.49536 * 175.09261 * 22 21 11 25 25 H 1.08996 * 109.47688 * 304.85979 * 1 2 3 26 26 H 1.09002 * 109.47373 * 64.86587 * 1 2 3 27 27 H 1.09004 * 109.46738 * 184.85545 * 1 2 3 28 28 H 1.08996 * 109.47399 * 240.00656 * 2 1 3 29 29 H 1.08996 * 109.47379 * 119.99984 * 2 1 3 30 30 H 1.09001 * 109.47222 * 59.99772 * 8 7 5 31 31 H 1.09010 * 109.47084 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47462 * 299.99757 * 8 7 5 33 33 H 1.08999 * 109.47665 * 30.27524 * 12 11 9 34 34 H 1.09005 * 109.46735 * 150.27403 * 12 11 9 35 35 H 0.97002 * 119.99862 * 180.02562 * 16 15 13 36 36 H 1.08990 * 109.47278 * 26.17737 * 21 11 9 37 37 H 1.09004 * 109.46826 * 146.17858 * 21 11 9 38 38 H 1.08994 * 115.54810 * 29.42414 * 22 21 11 39 39 H 1.09003 * 117.49764 * 0.02562 * 23 22 21 40 40 H 1.09002 * 117.49616 * 145.02591 * 23 22 21 41 41 H 1.08997 * 117.49739 * 214.98374 * 24 22 21 42 42 H 1.09002 * 117.49296 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5920 1.9863 -0.8318 5 6 3.5397 1.4452 -0.1476 6 8 4.2305 1.9377 0.7127 7 8 4.1079 0.9004 -1.2348 8 6 5.5574 0.9390 -1.3102 9 6 1.6617 2.1090 1.2976 10 8 1.6386 1.4657 2.3255 11 7 1.3492 3.4200 1.3159 12 6 1.0866 4.0926 2.5905 13 6 -0.3805 3.9905 2.9196 14 1 -1.0502 3.4756 2.2467 15 6 -0.8677 4.5544 4.0796 16 7 -0.0520 5.1809 4.8992 17 14 -2.6861 4.4272 4.4878 18 1 -2.9309 3.1942 5.2785 19 1 -3.0999 5.6133 5.2797 20 1 -3.4732 4.3728 3.2297 21 6 1.2662 4.1707 0.0606 22 6 2.6114 4.8431 -0.2213 23 6 2.6456 6.3726 -0.2442 24 6 2.7657 5.5844 -1.5509 25 1 -0.3634 0.5873 0.8432 26 1 -0.3634 0.4365 -0.9304 27 1 -0.3633 -1.0240 0.0870 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 5.9800 0.4041 -0.4597 31 1 5.8858 0.4670 -2.2364 32 1 5.8948 1.9754 -1.2917 33 1 1.6698 3.6173 3.3792 34 1 1.3692 5.1425 2.5122 35 1 -0.3948 5.5773 5.7155 36 1 1.0225 3.4896 -0.7546 37 1 0.4899 4.9315 0.1429 38 1 3.4868 4.3259 0.1711 39 1 1.7098 6.8997 -0.0580 40 1 3.5438 6.8616 0.1329 41 1 3.7428 5.5551 -2.0329 42 1 1.9090 5.5926 -2.2248 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431842598.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:50 Heat of formation + Delta-G solvation = -99.272768 kcal Electronic energy + Delta-G solvation = -23792.475393 eV Core-core repulsion = 20352.784731 eV Total energy + Delta-G solvation = -3439.690662 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.77902 -39.06037 -37.22634 -36.33309 -34.64467 -34.15645 -32.49177 -29.25963 -28.02814 -27.08970 -25.93739 -23.34222 -22.17352 -22.12581 -21.15450 -20.55016 -18.41701 -17.74483 -16.90299 -16.63057 -16.36221 -16.03467 -15.59932 -14.84930 -14.47757 -14.26194 -13.89909 -13.81909 -13.44301 -12.96524 -12.70075 -12.50162 -12.35382 -12.13571 -12.07268 -11.77634 -11.39938 -11.34503 -11.25798 -11.08623 -10.88736 -10.82319 -10.72626 -10.58657 -10.28083 -10.24563 -10.09011 -9.68754 -9.59093 -8.95867 -8.40088 -7.67512 -6.00862 -4.05594 2.25177 2.46328 3.32922 3.38851 3.40046 3.55930 3.77757 4.04053 4.46061 4.60812 4.83258 4.90847 4.97958 5.02297 5.06873 5.10431 5.16193 5.29122 5.33572 5.40777 5.47940 5.58145 5.68857 5.75394 5.80393 5.81746 6.02602 6.05390 6.10028 6.27513 6.29101 6.34279 6.46470 6.51629 7.09465 7.49298 7.54802 7.77737 7.94883 8.26105 8.38623 8.90479 9.05762 9.58909 11.07280 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.016076 B = 0.005986 C = 0.005003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.258743 B = 4676.238396 C = 5594.778042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.104 4.104 3 C -0.111 4.111 4 H 0.124 0.876 5 C 0.476 3.524 6 O -0.488 6.488 7 O -0.358 6.358 8 C 0.035 3.965 9 C 0.529 3.471 10 O -0.521 6.521 11 N -0.586 5.586 12 C 0.250 3.750 13 C -0.525 4.525 14 H 0.057 0.943 15 C 0.061 3.939 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.137 3.863 22 C -0.173 4.173 23 C -0.170 4.170 24 C -0.182 4.182 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.035 0.965 35 H 0.263 0.737 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.410 -4.969 -16.992 18.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.142 4.142 3 C -0.133 4.133 4 H 0.141 0.859 5 C 0.317 3.683 6 O -0.373 6.373 7 O -0.275 6.275 8 C -0.059 4.059 9 C 0.313 3.687 10 O -0.396 6.396 11 N -0.316 5.316 12 C 0.131 3.869 13 C -0.563 4.563 14 H 0.076 0.924 15 C -0.141 4.141 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 C 0.013 3.987 22 C -0.192 4.192 23 C -0.207 4.207 24 C -0.220 4.220 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.124 0.876 39 H 0.117 0.883 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.638 -5.037 -15.964 18.008 hybrid contribution -0.665 0.190 0.263 0.740 sum 5.973 -4.846 -15.701 17.484 Atomic orbital electron populations 1.21791 0.94256 1.02495 1.02541 1.21381 0.97366 0.91822 1.03584 1.21544 0.89143 1.01430 1.01222 0.85855 1.23153 0.91120 0.74698 0.79301 1.90738 1.64469 1.41375 1.40702 1.86481 1.24205 1.73552 1.43284 1.23252 0.76656 1.02825 1.03121 1.19316 0.78302 0.82620 0.88488 1.90683 1.52357 1.62862 1.33718 1.48131 1.66684 1.07923 1.08865 1.19291 0.96529 0.92220 0.78830 1.21416 0.93323 1.35324 1.06285 0.92431 1.24924 0.98032 0.95175 0.95925 1.69944 1.34770 1.36496 1.12079 0.86520 0.85023 0.77584 0.78403 1.20570 1.21212 1.19938 1.21138 0.94982 0.96056 0.86531 1.22971 1.00389 0.95225 1.00621 1.22988 1.03436 0.93973 1.00335 1.22933 1.02547 1.05652 0.90853 0.91364 0.92667 0.92050 0.90397 0.90086 0.91894 0.88163 0.91924 0.93983 0.94688 0.92761 0.91203 0.89444 0.87632 0.88330 0.89151 0.89298 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.81 37.16 0.36 -1.70 16 2 C -0.10 -1.45 5.14 -26.73 -0.14 -1.58 16 3 C -0.11 -1.77 2.19 -92.92 -0.20 -1.97 16 4 H 0.12 1.62 5.60 -51.93 -0.29 1.33 16 5 C 0.48 7.66 7.24 36.01 0.26 7.92 16 6 O -0.49 -9.55 15.11 -18.75 -0.28 -9.83 16 7 O -0.36 -4.59 10.36 -39.24 -0.41 -5.00 16 8 C 0.04 0.34 10.56 101.05 1.07 1.41 16 9 C 0.53 11.32 4.90 -10.99 -0.05 11.26 16 10 O -0.52 -13.44 15.65 5.55 0.09 -13.35 16 11 N -0.59 -12.68 2.46 -175.06 -0.43 -13.11 16 12 C 0.25 6.67 5.14 -5.19 -0.03 6.64 16 13 C -0.52 -14.85 9.38 -34.44 -0.32 -15.17 16 14 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 17 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 C 0.14 2.29 5.51 -4.04 -0.02 2.27 16 22 C -0.17 -2.65 6.01 -90.61 -0.54 -3.19 16 23 C -0.17 -2.37 10.18 -26.69 -0.27 -2.64 16 24 C -0.18 -2.16 10.25 -26.69 -0.27 -2.43 16 25 H 0.07 1.16 7.17 -51.93 -0.37 0.78 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.86 7.97 -51.93 -0.41 0.45 16 29 H 0.08 1.28 7.64 -51.93 -0.40 0.88 16 30 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 31 H 0.10 0.63 8.14 -51.92 -0.42 0.20 16 32 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 33 H 0.04 1.29 7.50 -51.93 -0.39 0.90 16 34 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 36 H 0.07 0.95 5.69 -51.93 -0.30 0.66 16 37 H 0.09 1.49 7.83 -51.93 -0.41 1.08 16 38 H 0.11 1.86 7.45 -51.93 -0.39 1.47 16 39 H 0.10 1.38 8.03 -51.93 -0.42 0.96 16 40 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 353.70 15.07 5.33 5.33 Total: -1.00 -34.45 353.70 -6.96 -41.42 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -6.72 Total: 1.29 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -0.26 Total: 2.48 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.31 Total: -39.19 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.60 Total: -28.19 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.45 -6.96 -41.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431842598.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.857 kcal (2) G-P(sol) polarization free energy of solvation -34.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds