Wall clock time and date at job start Tue Mar 31 2020 06:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 116.99798 * 2 1 4 4 O 1.20821 * 120.00210 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00117 * 179.97438 * 3 2 1 6 6 H 1.08994 * 109.47076 * 300.00016 * 5 3 2 7 7 C 1.52996 * 109.46870 * 60.00203 * 5 3 2 8 8 C 1.53005 * 109.46969 * 180.02562 * 7 5 3 9 9 C 1.52998 * 109.46958 * 299.99697 * 8 7 5 10 10 H 1.08998 * 109.47683 * 300.00046 * 9 8 7 11 11 C 1.50704 * 109.47115 * 179.97438 * 9 8 7 12 12 O 1.21282 * 120.00037 * 240.00254 * 11 9 8 13 13 N 1.34776 * 119.99913 * 60.00066 * 11 9 8 14 14 C 1.46505 * 119.99813 * 180.02562 * 13 11 9 15 15 H 1.09003 * 109.47147 * 324.99880 * 14 13 11 16 16 C 1.52990 * 109.46853 * 85.00032 * 14 13 11 17 17 C 1.50700 * 109.46644 * 205.00220 * 14 13 11 18 18 H 1.08001 * 119.99949 * 265.61795 * 17 14 13 19 19 C 1.37871 * 120.00339 * 85.62894 * 17 14 13 20 20 N 1.31519 * 119.99815 * 352.95078 * 19 17 14 21 21 Si 1.86796 * 120.00267 * 172.95812 * 19 17 14 22 22 H 1.48503 * 109.47134 * 269.99234 * 21 19 17 23 23 H 1.48502 * 109.47309 * 29.99721 * 21 19 17 24 24 H 1.48509 * 109.47201 * 149.99602 * 21 19 17 25 25 C 1.53008 * 109.47216 * 60.00136 * 9 8 7 26 26 C 1.52998 * 109.47115 * 179.97438 * 5 3 2 27 27 H 1.08994 * 109.47265 * 299.99548 * 1 2 3 28 28 H 1.08999 * 109.47217 * 60.00387 * 1 2 3 29 29 H 1.09008 * 109.46825 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47208 * 299.99435 * 7 5 3 31 31 H 1.08994 * 109.47424 * 60.00026 * 7 5 3 32 32 H 1.08995 * 109.47350 * 180.02562 * 8 7 5 33 33 H 1.08994 * 109.47134 * 59.99717 * 8 7 5 34 34 H 0.97001 * 119.99955 * 0.02562 * 13 11 9 35 35 H 1.08998 * 109.47431 * 295.94493 * 16 14 13 36 36 H 1.09004 * 109.47341 * 55.94823 * 16 14 13 37 37 H 1.09006 * 109.46820 * 175.94277 * 16 14 13 38 38 H 0.96997 * 120.00102 * 354.58630 * 20 19 17 39 39 H 1.08998 * 109.46868 * 59.99410 * 25 9 8 40 40 H 1.08996 * 109.47066 * 179.97438 * 25 9 8 41 41 H 1.09011 * 109.47073 * 60.00254 * 26 5 3 42 42 H 1.08998 * 109.47683 * 300.00071 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9557 0.7811 0.8908 7 6 4.1138 0.5812 -1.2483 8 6 5.6418 0.6608 -1.2474 9 6 6.0760 2.1279 -1.2473 10 1 5.6870 2.6221 -2.1374 11 6 7.5810 2.2063 -1.2457 12 8 8.1584 2.7625 -0.3356 13 7 8.2854 1.6584 -2.2558 14 6 9.7484 1.7342 -2.2540 15 1 10.0626 2.6831 -1.8192 16 6 10.3178 0.5805 -1.4260 17 6 10.2581 1.6366 -3.6688 18 1 10.5558 0.6794 -4.0707 19 6 10.3446 2.7693 -4.4501 20 7 9.8548 3.9088 -4.0126 21 14 11.1570 2.6854 -6.1300 22 1 12.6079 2.9707 -5.9930 23 1 10.9713 1.3279 -6.7026 24 1 10.5377 3.6912 -7.0302 25 6 5.5285 2.8217 0.0017 26 6 4.0000 2.7422 -0.0002 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 3.8049 -0.4641 -1.2482 31 1 3.7245 1.0751 -2.1385 32 1 6.0319 0.1670 -2.1373 33 1 6.0308 0.1667 -0.3572 34 1 7.8236 1.2139 -2.9838 35 1 10.0076 0.6912 -0.3870 36 1 9.9453 -0.3662 -1.8175 37 1 11.4062 0.5944 -1.4838 38 1 9.3640 3.9366 -3.1765 39 1 5.9175 2.3275 0.8919 40 1 5.8382 3.8668 0.0020 41 1 3.6099 3.2369 0.8894 42 1 3.6107 3.2358 -0.8906 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435465941.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:24 Heat of formation + Delta-G solvation = -163.087653 kcal Electronic energy + Delta-G solvation = -22847.194679 eV Core-core repulsion = 19404.736796 eV Total energy + Delta-G solvation = -3442.457883 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.91148 -39.41712 -37.48452 -36.50480 -34.88022 -32.29215 -31.56298 -30.81121 -29.24308 -27.95153 -24.80830 -24.48096 -22.70643 -21.79348 -20.82300 -19.91066 -19.14074 -17.71507 -17.46855 -16.91195 -16.60370 -16.08066 -15.22124 -14.62827 -14.24615 -14.10982 -13.92956 -13.81614 -13.53944 -13.32123 -12.98222 -12.74992 -12.51795 -12.29892 -12.15004 -11.78221 -11.52847 -11.28354 -11.19183 -11.06869 -11.04434 -11.02231 -10.82777 -10.54251 -10.36525 -10.22191 -10.16331 -10.03906 -9.06917 -8.66522 -8.57140 -7.78527 -6.53492 -4.34882 2.00514 2.49535 3.36142 3.36834 3.52084 3.54264 4.16262 4.39780 4.44150 4.55024 4.60310 4.81976 4.89191 5.03777 5.11246 5.12200 5.23738 5.24567 5.31804 5.42422 5.45910 5.61388 5.78225 5.89378 5.95428 5.99464 6.09467 6.11637 6.23704 6.36045 6.39204 6.49230 6.54868 6.61993 7.06300 7.26331 7.54111 7.69492 7.93134 8.28028 8.61587 8.82744 9.26444 9.45731 10.83442 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.027635 B = 0.003461 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.976803 B = 8088.627143 C = 8274.323167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.465 3.535 4 O -0.507 6.507 5 C -0.079 4.079 6 H 0.110 0.890 7 C -0.107 4.107 8 C -0.106 4.106 9 C -0.115 4.115 10 H 0.092 0.908 11 C 0.500 3.500 12 O -0.566 6.566 13 N -0.704 5.704 14 C 0.236 3.764 15 H 0.051 0.949 16 C -0.140 4.140 17 C -0.609 4.609 18 H 0.056 0.944 19 C 0.030 3.970 20 N -0.890 5.890 21 Si 1.071 2.929 22 H -0.285 1.285 23 H -0.287 1.287 24 H -0.285 1.285 25 C -0.095 4.095 26 C -0.103 4.103 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.386 0.614 35 H 0.031 0.969 36 H 0.038 0.962 37 H 0.051 0.949 38 H 0.278 0.722 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.943 -8.784 5.732 19.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.308 3.692 4 O -0.394 6.394 5 C -0.099 4.099 6 H 0.128 0.872 7 C -0.145 4.145 8 C -0.144 4.144 9 C -0.136 4.136 10 H 0.110 0.890 11 C 0.285 3.715 12 O -0.446 6.446 13 N -0.353 5.353 14 C 0.136 3.864 15 H 0.069 0.931 16 C -0.198 4.198 17 C -0.648 4.648 18 H 0.074 0.926 19 C -0.179 4.179 20 N -0.523 5.523 21 Si 0.899 3.101 22 H -0.211 1.211 23 H -0.213 1.213 24 H -0.210 1.210 25 C -0.133 4.133 26 C -0.141 4.141 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.219 0.781 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.263 -7.171 5.081 17.613 hybrid contribution -1.030 -1.102 0.920 1.767 sum -16.294 -8.273 6.001 19.234 Atomic orbital electron populations 1.23255 0.76611 1.03606 1.02493 1.86528 1.23231 1.33710 1.84089 1.24010 0.92226 0.81160 0.71808 1.90661 1.67246 1.36404 1.45130 1.21208 0.86108 1.00196 1.02340 0.87190 1.21534 0.96178 1.00890 0.95906 1.21490 0.94261 0.95310 1.03316 1.21448 0.94315 0.97256 1.00600 0.89019 1.20571 0.88766 0.79105 0.83018 1.90607 1.72029 1.45157 1.36821 1.47649 1.09755 1.55482 1.22380 1.18879 0.76321 0.95217 0.95933 0.93095 1.21995 1.00359 0.99205 0.98270 1.22152 1.47557 0.96992 0.98079 0.92599 1.26011 0.95460 0.92272 1.04169 1.70699 1.31501 1.27102 1.23033 0.83521 0.76452 0.75451 0.74680 1.21149 1.21281 1.21024 1.21314 0.92650 1.01928 0.97386 1.21512 0.96335 0.92632 1.03576 0.92001 0.91931 0.88154 0.90336 0.91119 0.90602 0.91118 0.78098 0.94983 0.94298 0.92963 0.91046 0.91105 0.90535 0.90929 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.67 10.47 -39.26 -0.41 -4.08 16 3 C 0.46 5.41 7.26 36.01 0.26 5.67 16 4 O -0.51 -7.21 15.73 -18.75 -0.29 -7.51 16 5 C -0.08 -0.84 2.63 -91.77 -0.24 -1.08 16 6 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 7 C -0.11 -1.08 5.13 -26.73 -0.14 -1.22 16 8 C -0.11 -1.27 5.10 -26.73 -0.14 -1.40 16 9 C -0.11 -1.72 2.53 -91.77 -0.23 -1.95 16 10 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 11 C 0.50 10.20 7.12 -10.98 -0.08 10.12 16 12 O -0.57 -13.65 15.64 5.56 0.09 -13.57 16 13 N -0.70 -15.04 4.90 -54.93 -0.27 -15.31 16 14 C 0.24 5.84 2.04 -69.08 -0.14 5.70 16 15 H 0.05 1.46 6.59 -51.93 -0.34 1.12 16 16 C -0.14 -3.04 9.46 37.15 0.35 -2.69 16 17 C -0.61 -16.01 8.49 -34.44 -0.29 -16.31 16 18 H 0.06 1.45 7.82 -52.49 -0.41 1.04 16 19 C 0.03 0.81 5.45 -17.82 -0.10 0.71 16 20 N -0.89 -26.02 13.56 55.43 0.75 -25.27 16 21 Si 1.07 23.81 29.91 -169.99 -5.08 18.73 16 22 H -0.29 -6.20 7.11 56.52 0.40 -5.79 16 23 H -0.29 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 25 C -0.09 -1.33 4.49 -26.70 -0.12 -1.45 16 26 C -0.10 -1.22 4.49 -26.71 -0.12 -1.34 16 27 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 28 H 0.06 0.47 8.13 -51.93 -0.42 0.04 16 29 H 0.10 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.08 0.69 8.11 -51.93 -0.42 0.27 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.89 7.56 -51.93 -0.39 0.49 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.39 7.54 8.01 -40.82 -0.33 7.22 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.28 8.33 6.93 -40.82 -0.28 8.04 16 39 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 40 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 41 H 0.07 0.84 8.10 -51.92 -0.42 0.42 16 42 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 LS Contribution 345.11 15.07 5.20 5.20 Total: -1.00 -32.18 345.11 -6.82 -38.99 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -6.88 Total: 6.74 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 0.08 Total: -3.92 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.48 Total: -40.59 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.62 Total: -25.16 kcal Atomic # 14 Polarization: 23.81 SS G_CDS: -5.08 Total: 18.73 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.18 -6.82 -38.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435465941.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.093 kcal (2) G-P(sol) polarization free energy of solvation -32.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds