Wall clock time and date at job start Tue Mar 31 2020 06:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 116.99798 * 2 1 4 4 O 1.20821 * 120.00210 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00117 * 179.97438 * 3 2 1 6 6 H 1.08994 * 109.47076 * 300.00016 * 5 3 2 7 7 C 1.52996 * 109.46870 * 60.00203 * 5 3 2 8 8 C 1.53005 * 109.46969 * 180.02562 * 7 5 3 9 9 C 1.52998 * 109.46958 * 299.99697 * 8 7 5 10 10 H 1.08998 * 109.47683 * 300.00046 * 9 8 7 11 11 C 1.50704 * 109.47115 * 179.97438 * 9 8 7 12 12 O 1.21282 * 120.00037 * 240.00254 * 11 9 8 13 13 N 1.34776 * 119.99913 * 60.00066 * 11 9 8 14 14 C 1.46505 * 119.99813 * 180.02562 * 13 11 9 15 15 H 1.09003 * 109.47147 * 324.99880 * 14 13 11 16 16 C 1.52990 * 109.46853 * 85.00032 * 14 13 11 17 17 C 1.50700 * 109.46644 * 205.00220 * 14 13 11 18 18 H 1.08001 * 119.99949 * 265.61795 * 17 14 13 19 19 C 1.37871 * 120.00339 * 85.62894 * 17 14 13 20 20 N 1.31519 * 119.99815 * 352.95078 * 19 17 14 21 21 Si 1.86796 * 120.00267 * 172.95812 * 19 17 14 22 22 H 1.48503 * 109.47134 * 269.99234 * 21 19 17 23 23 H 1.48502 * 109.47309 * 29.99721 * 21 19 17 24 24 H 1.48509 * 109.47201 * 149.99602 * 21 19 17 25 25 C 1.53008 * 109.47216 * 60.00136 * 9 8 7 26 26 C 1.52998 * 109.47115 * 179.97438 * 5 3 2 27 27 H 1.08994 * 109.47265 * 299.99548 * 1 2 3 28 28 H 1.08999 * 109.47217 * 60.00387 * 1 2 3 29 29 H 1.09008 * 109.46825 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47208 * 299.99435 * 7 5 3 31 31 H 1.08994 * 109.47424 * 60.00026 * 7 5 3 32 32 H 1.08995 * 109.47350 * 180.02562 * 8 7 5 33 33 H 1.08994 * 109.47134 * 59.99717 * 8 7 5 34 34 H 0.97001 * 119.99955 * 0.02562 * 13 11 9 35 35 H 1.08998 * 109.47431 * 295.94493 * 16 14 13 36 36 H 1.09004 * 109.47341 * 55.94823 * 16 14 13 37 37 H 1.09006 * 109.46820 * 175.94277 * 16 14 13 38 38 H 0.96997 * 120.00102 * 354.58630 * 20 19 17 39 39 H 1.08998 * 109.46868 * 59.99410 * 25 9 8 40 40 H 1.08996 * 109.47066 * 179.97438 * 25 9 8 41 41 H 1.09011 * 109.47073 * 60.00254 * 26 5 3 42 42 H 1.08998 * 109.47683 * 300.00071 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9557 0.7811 0.8908 7 6 4.1138 0.5812 -1.2483 8 6 5.6418 0.6608 -1.2474 9 6 6.0760 2.1279 -1.2473 10 1 5.6870 2.6221 -2.1374 11 6 7.5810 2.2063 -1.2457 12 8 8.1584 2.7625 -0.3356 13 7 8.2854 1.6584 -2.2558 14 6 9.7484 1.7342 -2.2540 15 1 10.0626 2.6831 -1.8192 16 6 10.3178 0.5805 -1.4260 17 6 10.2581 1.6366 -3.6688 18 1 10.5558 0.6794 -4.0707 19 6 10.3446 2.7693 -4.4501 20 7 9.8548 3.9088 -4.0126 21 14 11.1570 2.6854 -6.1300 22 1 12.6079 2.9707 -5.9930 23 1 10.9713 1.3279 -6.7026 24 1 10.5377 3.6912 -7.0302 25 6 5.5285 2.8217 0.0017 26 6 4.0000 2.7422 -0.0002 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 3.8049 -0.4641 -1.2482 31 1 3.7245 1.0751 -2.1385 32 1 6.0319 0.1670 -2.1373 33 1 6.0308 0.1667 -0.3572 34 1 7.8236 1.2139 -2.9838 35 1 10.0076 0.6912 -0.3870 36 1 9.9453 -0.3662 -1.8175 37 1 11.4062 0.5944 -1.4838 38 1 9.3640 3.9366 -3.1765 39 1 5.9175 2.3275 0.8919 40 1 5.8382 3.8668 0.0020 41 1 3.6099 3.2369 0.8894 42 1 3.6107 3.2358 -0.8906 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435465941.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:23 Heat of formation + Delta-G solvation = -183.275806 kcal Electronic energy + Delta-G solvation = -22848.070103 eV Core-core repulsion = 19404.736796 eV Total energy + Delta-G solvation = -3443.333307 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.83280 -40.87629 -38.68595 -37.44838 -36.77113 -34.14937 -32.87228 -31.87535 -30.90188 -28.66041 -26.76021 -25.69402 -23.76602 -23.19227 -22.18843 -21.03325 -20.64563 -19.30907 -18.59142 -17.89053 -17.65508 -17.45503 -16.69924 -16.06727 -15.67922 -15.43663 -15.37434 -15.13123 -14.90480 -14.52066 -14.22403 -13.97233 -13.74093 -13.38032 -13.26122 -13.07674 -12.92476 -12.86417 -12.62255 -12.51189 -12.32634 -12.14592 -12.03452 -11.86975 -11.80610 -11.52963 -11.37931 -11.18314 -10.93698 -10.69835 -10.40636 -9.63341 -8.68655 -6.50499 1.12765 1.57377 1.62867 1.72975 1.82113 1.88110 2.52320 2.60286 3.25484 3.51123 3.60251 3.68003 4.00230 4.07078 4.08637 4.28088 4.31833 4.33102 4.34278 4.42038 4.46479 4.52203 4.70162 4.74530 4.74980 4.79674 4.84146 4.97175 5.06815 5.11906 5.12889 5.23423 5.29325 5.32147 5.35002 5.41086 5.77056 6.02399 6.14970 6.46173 6.69447 7.03806 7.38883 7.58301 8.67000 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.027635 B = 0.003461 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.976803 B = 8088.627143 C = 8274.323167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.470 3.530 4 O -0.539 6.539 5 C -0.077 4.077 6 H 0.128 0.872 7 C -0.098 4.098 8 C -0.099 4.099 9 C -0.105 4.105 10 H 0.097 0.903 11 C 0.495 3.505 12 O -0.608 6.608 13 N -0.702 5.702 14 C 0.237 3.763 15 H 0.001 0.999 16 C -0.129 4.129 17 C -0.613 4.613 18 H 0.063 0.937 19 C -0.019 4.019 20 N -0.923 5.923 21 Si 1.121 2.879 22 H -0.278 1.278 23 H -0.261 1.261 24 H -0.288 1.288 25 C -0.089 4.089 26 C -0.094 4.094 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.132 0.868 30 H 0.101 0.899 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.397 0.603 35 H 0.030 0.970 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.259 0.741 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.139 -11.255 4.958 21.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.315 3.685 4 O -0.428 6.428 5 C -0.096 4.096 6 H 0.146 0.854 7 C -0.136 4.136 8 C -0.137 4.137 9 C -0.126 4.126 10 H 0.116 0.884 11 C 0.283 3.717 12 O -0.491 6.491 13 N -0.350 5.350 14 C 0.135 3.865 15 H 0.019 0.981 16 C -0.188 4.188 17 C -0.651 4.651 18 H 0.082 0.918 19 C -0.221 4.221 20 N -0.558 5.558 21 Si 0.942 3.058 22 H -0.204 1.204 23 H -0.185 1.185 24 H -0.214 1.214 25 C -0.127 4.127 26 C -0.131 4.131 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.150 0.850 30 H 0.119 0.881 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.232 0.768 35 H 0.049 0.951 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.483 -9.694 4.310 19.602 hybrid contribution -0.683 -0.361 1.246 1.466 sum -17.166 -10.055 5.556 20.655 Atomic orbital electron populations 1.23544 0.75016 1.05685 1.02402 1.86512 1.24788 1.32685 1.83546 1.24071 0.92404 0.81128 0.70929 1.90656 1.67949 1.37480 1.46753 1.21191 0.85804 0.99106 1.03522 0.85435 1.21483 0.94232 1.02243 0.95609 1.21468 0.95835 0.92472 1.03887 1.21429 0.89753 1.00115 1.01297 0.88447 1.21433 0.91047 0.77523 0.81739 1.90584 1.73490 1.46644 1.38359 1.47217 1.08665 1.55938 1.23224 1.18655 0.78230 0.94011 0.95594 0.98134 1.21865 1.00364 0.98838 0.97691 1.22410 1.47071 0.97166 0.98440 0.91833 1.27449 0.95348 0.91821 1.07487 1.70845 1.33716 1.28450 1.22746 0.82893 0.75732 0.76595 0.70560 1.20365 1.18531 1.21442 1.21229 0.94320 1.00362 0.96779 1.21371 0.94189 0.94083 1.03471 0.92079 0.92128 0.85027 0.88055 0.90919 0.89872 0.90785 0.76778 0.95128 0.92137 0.92798 0.93082 0.91383 0.92825 0.90733 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.53 16 2 O -0.36 -6.36 10.47 -51.41 -0.54 -6.90 16 3 C 0.47 9.95 7.26 71.24 0.52 10.46 16 4 O -0.54 -14.65 15.73 21.98 0.35 -14.31 16 5 C -0.08 -1.45 2.63 -11.54 -0.03 -1.48 16 6 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 7 C -0.10 -1.67 5.13 30.59 0.16 -1.51 16 8 C -0.10 -2.13 5.10 30.60 0.16 -1.98 16 9 C -0.10 -3.08 2.53 -11.54 -0.03 -3.11 16 10 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 11 C 0.50 20.49 7.12 87.66 0.62 21.11 16 12 O -0.61 -30.44 15.64 -3.04 -0.05 -30.49 16 13 N -0.70 -30.14 4.90 -446.09 -2.18 -32.32 16 14 C 0.24 11.89 2.04 44.24 0.09 11.98 16 15 H 0.00 0.04 6.59 -2.39 -0.02 0.02 16 16 C -0.13 -5.54 9.46 71.98 0.68 -4.86 16 17 C -0.61 -32.04 8.49 25.60 0.22 -31.83 16 18 H 0.06 3.19 7.82 -2.91 -0.02 3.16 16 19 C -0.02 -1.06 5.45 84.65 0.46 -0.59 16 20 N -0.92 -55.36 13.56 21.45 0.29 -55.07 16 21 Si 1.12 47.26 29.91 68.60 2.05 49.31 16 22 H -0.28 -11.32 7.11 99.48 0.71 -10.62 16 23 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 24 H -0.29 -12.28 7.11 99.48 0.71 -11.58 16 25 C -0.09 -2.49 4.49 30.61 0.14 -2.35 16 26 C -0.09 -2.12 4.49 30.61 0.14 -1.98 16 27 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 28 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 29 H 0.13 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.10 1.36 8.11 -2.39 -0.02 1.34 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.08 1.71 7.56 -2.39 -0.02 1.69 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.40 15.25 8.01 -92.71 -0.74 14.51 16 35 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 38 H 0.26 16.23 6.93 -92.71 -0.64 15.59 16 39 H 0.07 1.93 8.10 -2.39 -0.02 1.91 16 40 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 41 H 0.07 1.68 8.10 -2.38 -0.02 1.66 16 42 H 0.07 1.61 8.10 -2.39 -0.02 1.59 16 Total: -1.00 -71.52 345.11 4.62 -66.90 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: 0.39 Total: 27.48 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 4.32 Total: -4.61 kcal Atomic # 7 Polarization: -85.49 SS G_CDS: -1.89 Total: -87.39 kcal Atomic # 8 Polarization: -51.45 SS G_CDS: -0.24 Total: -51.69 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.05 Total: 49.31 kcal Total: -71.52 4.62 -66.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435465941.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.380 kcal (2) G-P(sol) polarization free energy of solvation -71.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds