Wall clock time and date at job start Tue Mar 31 2020 06:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47026 * 2 1 4 4 C 1.37101 * 119.99606 * 263.90241 * 3 2 1 5 5 H 1.08009 * 119.99466 * 190.68733 * 4 3 2 6 6 C 1.38944 * 120.00284 * 10.68993 * 4 3 2 7 7 N 1.31414 * 120.00107 * 19.44843 * 6 4 3 8 8 Si 1.86801 * 119.99911 * 199.44834 * 6 4 3 9 9 H 1.48501 * 109.47272 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46872 * 119.99814 * 8 6 4 11 11 H 1.48497 * 109.47486 * 239.99782 * 8 6 4 12 12 C 1.34773 * 120.00475 * 83.90555 * 3 2 1 13 13 O 1.21299 * 119.99489 * 5.66396 * 12 3 2 14 14 C 1.50697 * 120.00428 * 185.66973 * 12 3 2 15 15 H 1.09003 * 109.47012 * 42.61333 * 14 12 3 16 16 C 1.53004 * 109.47105 * 162.61611 * 14 12 3 17 17 C 1.53000 * 109.46834 * 179.97438 * 16 14 12 18 18 C 1.52996 * 109.47417 * 300.00095 * 17 16 14 19 19 H 1.08998 * 109.47218 * 300.00242 * 18 17 16 20 20 C 1.50703 * 109.47249 * 180.02562 * 18 17 16 21 21 O 1.20832 * 119.99959 * 359.97438 * 20 18 17 22 22 O 1.34223 * 120.00433 * 180.02562 * 20 18 17 23 23 C 1.45199 * 117.00376 * 179.97438 * 22 20 18 24 24 C 1.53004 * 109.47196 * 60.00126 * 18 17 16 25 25 C 1.52996 * 109.46942 * 282.61581 * 14 12 3 26 26 H 1.08997 * 109.47268 * 53.26331 * 1 2 3 27 27 H 1.08996 * 109.46922 * 173.26705 * 1 2 3 28 28 H 1.08998 * 109.46890 * 293.26671 * 1 2 3 29 29 H 1.08998 * 109.46892 * 240.00247 * 2 1 3 30 30 H 1.09000 * 109.47196 * 120.00079 * 2 1 3 31 31 H 0.97000 * 119.99902 * 180.02562 * 7 6 4 32 32 H 1.08998 * 109.47206 * 299.99761 * 16 14 12 33 33 H 1.08998 * 109.46943 * 59.99868 * 16 14 12 34 34 H 1.09003 * 109.46808 * 60.00014 * 17 16 14 35 35 H 1.08998 * 109.46678 * 179.97438 * 17 16 14 36 36 H 1.08997 * 109.47319 * 300.00564 * 23 22 20 37 37 H 1.09007 * 109.46655 * 60.00191 * 23 22 20 38 38 H 1.08999 * 109.47301 * 179.97438 * 23 22 20 39 39 H 1.08998 * 109.46943 * 59.99947 * 24 18 17 40 40 H 1.08998 * 109.47206 * 180.02562 * 24 18 17 41 41 H 1.09000 * 109.47720 * 300.00066 * 25 14 12 42 42 H 1.08998 * 109.47518 * 60.00080 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3657 1.9854 -1.1807 5 1 2.8844 2.9327 -1.1703 6 6 2.0504 1.3792 -2.3905 7 7 1.1143 0.4581 -2.4396 8 14 2.9570 1.8735 -3.9471 9 1 3.9568 2.9233 -3.6255 10 1 3.6493 0.6884 -4.5142 11 1 1.9861 2.4013 -4.9391 12 6 2.1261 2.0580 1.1605 13 8 1.9177 1.4931 2.2135 14 6 2.5054 3.5164 1.1500 15 1 1.9645 4.0267 0.3530 16 6 2.1444 4.1470 2.4965 17 6 2.5300 5.6275 2.4860 18 6 4.0354 5.7608 2.2477 19 1 4.5761 5.2502 3.0446 20 6 4.4154 7.2191 2.2379 21 8 3.5688 8.0651 2.4040 22 8 5.6940 7.5783 2.0437 23 6 5.9869 9.0004 2.0462 24 6 4.3965 5.1302 0.9012 25 6 4.0107 3.6501 0.9114 26 1 -0.3633 0.6147 -0.8235 27 1 -0.3633 -1.0205 -0.1205 28 1 -0.3633 0.4059 0.9441 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.8945 0.0347 -3.2841 32 1 1.0719 4.0517 2.6664 33 1 2.6853 3.6366 3.2934 34 1 1.9894 6.1381 1.6890 35 1 2.2724 6.0768 3.4450 36 1 5.4216 9.4893 1.2528 37 1 5.7057 9.4276 3.0088 38 1 7.0534 9.1521 1.8795 39 1 3.8559 5.6408 0.1043 40 1 5.4690 5.2247 0.7316 41 1 4.5517 3.1398 1.7083 42 1 4.2680 3.2009 -0.0478 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000436125684.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:10 Heat of formation + Delta-G solvation = -132.010114 kcal Electronic energy + Delta-G solvation = -23455.784567 eV Core-core repulsion = 20014.674308 eV Total energy + Delta-G solvation = -3441.110260 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.70647 -39.15614 -37.25148 -36.30401 -34.95505 -31.58806 -31.43799 -30.54818 -29.36230 -27.78869 -24.94939 -24.21483 -22.46517 -21.94860 -20.70460 -19.55291 -18.92577 -17.51141 -17.03487 -16.62503 -16.39223 -15.99590 -14.72351 -14.40871 -14.29109 -13.96140 -13.86220 -13.39566 -13.24306 -13.00717 -12.59144 -12.46565 -12.18764 -12.01539 -11.96709 -11.53299 -11.31559 -11.17511 -11.08978 -10.92076 -10.88661 -10.81692 -10.61867 -10.41192 -10.32813 -10.13341 -9.98899 -9.73639 -9.66716 -8.89356 -8.23945 -7.75458 -6.36393 -3.87624 2.19286 2.68237 3.07313 3.19640 3.21742 3.90838 4.05746 4.59565 4.79794 4.87585 4.91093 4.95181 5.02699 5.04796 5.29997 5.41787 5.51948 5.54772 5.72951 5.77196 5.82788 5.90260 6.18771 6.24076 6.30387 6.32246 6.42589 6.49424 6.55522 6.66575 6.77749 6.82173 6.87288 6.91615 7.07741 7.35711 7.46830 7.72542 7.75857 7.80559 8.45048 9.07819 9.57936 9.98254 10.61188 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.019437 B = 0.004921 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.200337 B = 5689.025815 C = 6756.130390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.133 3.867 3 N -0.440 5.440 4 C -0.332 4.332 5 H 0.104 0.896 6 C 0.033 3.967 7 N -0.859 5.859 8 Si 0.915 3.085 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.283 1.283 12 C 0.457 3.543 13 O -0.612 6.612 14 C -0.091 4.091 15 H 0.087 0.913 16 C -0.095 4.095 17 C -0.101 4.101 18 C -0.078 4.078 19 H 0.109 0.891 20 C 0.466 3.534 21 O -0.510 6.510 22 O -0.359 6.359 23 C 0.034 3.966 24 C -0.107 4.107 25 C -0.109 4.109 26 H 0.081 0.919 27 H 0.034 0.966 28 H 0.022 0.978 29 H 0.097 0.903 30 H 0.034 0.966 31 H 0.266 0.734 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.567 10.205 3.929 13.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.010 3.990 3 N -0.157 5.157 4 C -0.460 4.460 5 H 0.122 0.878 6 C -0.171 4.171 7 N -0.498 5.498 8 Si 0.742 3.258 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.209 1.209 12 C 0.245 3.755 13 O -0.500 6.500 14 C -0.112 4.112 15 H 0.105 0.895 16 C -0.133 4.133 17 C -0.139 4.139 18 C -0.097 4.097 19 H 0.127 0.873 20 C 0.309 3.691 21 O -0.397 6.397 22 O -0.275 6.275 23 C -0.060 4.060 24 C -0.144 4.144 25 C -0.147 4.147 26 H 0.099 0.901 27 H 0.053 0.947 28 H 0.041 0.959 29 H 0.115 0.885 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.117 0.883 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.130 10.059 4.300 13.058 hybrid contribution 0.312 0.488 -1.001 1.157 sum 7.442 10.547 3.299 13.323 Atomic orbital electron populations 1.21905 0.96992 1.00096 1.00335 1.21222 0.94219 0.83372 1.00227 1.43849 1.55112 1.11356 1.05404 1.19842 1.36064 1.07273 0.82794 0.87801 1.25222 0.95651 0.96998 0.99217 1.70173 1.26277 1.26786 1.26552 0.86056 0.79588 0.78604 0.81574 1.19260 1.20606 1.20875 1.20002 0.83330 0.88273 0.83852 1.90507 1.57863 1.70342 1.31264 1.21046 0.96760 0.95085 0.98304 0.89458 1.21315 1.01835 0.92671 0.97459 1.21487 0.91887 0.97809 1.02703 1.21224 0.99281 0.87316 1.01917 0.87341 1.24122 0.80046 0.93114 0.71830 1.90645 1.50627 1.53327 1.45140 1.86537 1.29989 1.28221 1.82795 1.23233 1.02024 0.78312 1.02397 1.21544 1.01764 0.96885 0.94254 1.21530 0.95108 0.94375 1.03669 0.90052 0.94705 0.95881 0.88495 0.94745 0.92293 0.91403 0.91161 0.91110 0.91364 0.91991 0.92108 0.88269 0.91289 0.90754 0.91797 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.53 37.16 0.35 -2.81 16 2 C 0.13 3.25 5.29 -4.04 -0.02 3.23 16 3 N -0.44 -10.84 2.64 -114.81 -0.30 -11.14 16 4 C -0.33 -7.99 8.56 -14.93 -0.13 -8.12 16 5 H 0.10 2.33 4.93 -52.48 -0.26 2.07 16 6 C 0.03 0.80 5.02 -17.47 -0.09 0.71 16 7 N -0.86 -21.30 8.42 55.50 0.47 -20.83 16 8 Si 0.92 18.71 29.60 -169.99 -5.03 13.68 16 9 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 10 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 11 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 12 C 0.46 10.78 6.79 -10.99 -0.07 10.70 16 13 O -0.61 -15.98 15.66 5.54 0.09 -15.90 16 14 C -0.09 -1.71 1.68 -91.77 -0.15 -1.86 16 15 H 0.09 1.69 7.36 -51.93 -0.38 1.30 16 16 C -0.09 -1.59 4.64 -26.73 -0.12 -1.71 16 17 C -0.10 -1.44 4.49 -26.73 -0.12 -1.56 16 18 C -0.08 -1.02 2.63 -91.77 -0.24 -1.26 16 19 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 20 C 0.47 6.35 7.26 36.01 0.26 6.61 16 21 O -0.51 -8.13 15.73 -18.76 -0.30 -8.42 16 22 O -0.36 -4.33 10.47 -39.24 -0.41 -4.74 16 23 C 0.03 0.30 10.56 101.05 1.07 1.37 16 24 C -0.11 -1.43 5.14 -26.75 -0.14 -1.57 16 25 C -0.11 -1.77 4.88 -26.76 -0.13 -1.90 16 26 H 0.08 2.04 6.57 -51.93 -0.34 1.70 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.10 2.45 5.82 -51.93 -0.30 2.15 16 30 H 0.03 0.85 7.54 -51.93 -0.39 0.45 16 31 H 0.27 6.29 8.31 -40.82 -0.34 5.95 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.21 7.92 -51.93 -0.41 0.79 16 34 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 35 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 36 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 37 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 0.89 8.11 -51.93 -0.42 0.47 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.09 1.53 6.09 -51.93 -0.32 1.21 16 LS Contribution 332.40 15.07 5.01 5.01 Total: -1.00 -28.88 332.40 -6.62 -35.50 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -6.60 Total: 5.01 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 0.46 Total: 1.83 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: 0.16 Total: -31.97 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.62 Total: -29.06 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.88 -6.62 -35.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436125684.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.514 kcal (2) G-P(sol) polarization free energy of solvation -28.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds