Wall clock time and date at job start Tue Mar 31 2020 06:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47026 * 2 1 4 4 C 1.37101 * 119.99606 * 263.90241 * 3 2 1 5 5 H 1.08009 * 119.99466 * 190.68733 * 4 3 2 6 6 C 1.38944 * 120.00284 * 10.68993 * 4 3 2 7 7 N 1.31414 * 120.00107 * 19.44843 * 6 4 3 8 8 Si 1.86801 * 119.99911 * 199.44834 * 6 4 3 9 9 H 1.48501 * 109.47272 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46872 * 119.99814 * 8 6 4 11 11 H 1.48497 * 109.47486 * 239.99782 * 8 6 4 12 12 C 1.34773 * 120.00475 * 83.90555 * 3 2 1 13 13 O 1.21299 * 119.99489 * 5.66396 * 12 3 2 14 14 C 1.50697 * 120.00428 * 185.66973 * 12 3 2 15 15 H 1.09003 * 109.47012 * 42.61333 * 14 12 3 16 16 C 1.53004 * 109.47105 * 162.61611 * 14 12 3 17 17 C 1.53000 * 109.46834 * 179.97438 * 16 14 12 18 18 C 1.52996 * 109.47417 * 300.00095 * 17 16 14 19 19 H 1.08998 * 109.47218 * 300.00242 * 18 17 16 20 20 C 1.50703 * 109.47249 * 180.02562 * 18 17 16 21 21 O 1.20832 * 119.99959 * 359.97438 * 20 18 17 22 22 O 1.34223 * 120.00433 * 180.02562 * 20 18 17 23 23 C 1.45199 * 117.00376 * 179.97438 * 22 20 18 24 24 C 1.53004 * 109.47196 * 60.00126 * 18 17 16 25 25 C 1.52996 * 109.46942 * 282.61581 * 14 12 3 26 26 H 1.08997 * 109.47268 * 53.26331 * 1 2 3 27 27 H 1.08996 * 109.46922 * 173.26705 * 1 2 3 28 28 H 1.08998 * 109.46890 * 293.26671 * 1 2 3 29 29 H 1.08998 * 109.46892 * 240.00247 * 2 1 3 30 30 H 1.09000 * 109.47196 * 120.00079 * 2 1 3 31 31 H 0.97000 * 119.99902 * 180.02562 * 7 6 4 32 32 H 1.08998 * 109.47206 * 299.99761 * 16 14 12 33 33 H 1.08998 * 109.46943 * 59.99868 * 16 14 12 34 34 H 1.09003 * 109.46808 * 60.00014 * 17 16 14 35 35 H 1.08998 * 109.46678 * 179.97438 * 17 16 14 36 36 H 1.08997 * 109.47319 * 300.00564 * 23 22 20 37 37 H 1.09007 * 109.46655 * 60.00191 * 23 22 20 38 38 H 1.08999 * 109.47301 * 179.97438 * 23 22 20 39 39 H 1.08998 * 109.46943 * 59.99947 * 24 18 17 40 40 H 1.08998 * 109.47206 * 180.02562 * 24 18 17 41 41 H 1.09000 * 109.47720 * 300.00066 * 25 14 12 42 42 H 1.08998 * 109.47518 * 60.00080 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3657 1.9854 -1.1807 5 1 2.8844 2.9327 -1.1703 6 6 2.0504 1.3792 -2.3905 7 7 1.1143 0.4581 -2.4396 8 14 2.9570 1.8735 -3.9471 9 1 3.9568 2.9233 -3.6255 10 1 3.6493 0.6884 -4.5142 11 1 1.9861 2.4013 -4.9391 12 6 2.1261 2.0580 1.1605 13 8 1.9177 1.4931 2.2135 14 6 2.5054 3.5164 1.1500 15 1 1.9645 4.0267 0.3530 16 6 2.1444 4.1470 2.4965 17 6 2.5300 5.6275 2.4860 18 6 4.0354 5.7608 2.2477 19 1 4.5761 5.2502 3.0446 20 6 4.4154 7.2191 2.2379 21 8 3.5688 8.0651 2.4040 22 8 5.6940 7.5783 2.0437 23 6 5.9869 9.0004 2.0462 24 6 4.3965 5.1302 0.9012 25 6 4.0107 3.6501 0.9114 26 1 -0.3633 0.6147 -0.8235 27 1 -0.3633 -1.0205 -0.1205 28 1 -0.3633 0.4059 0.9441 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.8945 0.0347 -3.2841 32 1 1.0719 4.0517 2.6664 33 1 2.6853 3.6366 3.2934 34 1 1.9894 6.1381 1.6890 35 1 2.2724 6.0768 3.4450 36 1 5.4216 9.4893 1.2528 37 1 5.7057 9.4276 3.0088 38 1 7.0534 9.1521 1.8795 39 1 3.8559 5.6408 0.1043 40 1 5.4690 5.2247 0.7316 41 1 4.5517 3.1398 1.7083 42 1 4.2680 3.2009 -0.0478 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000436125684.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:09 Heat of formation + Delta-G solvation = -146.850528 kcal Electronic energy + Delta-G solvation = -23456.428096 eV Core-core repulsion = 20014.674308 eV Total energy + Delta-G solvation = -3441.753788 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.78199 -40.79362 -38.60478 -37.40707 -36.83530 -33.40883 -32.95010 -31.83419 -31.07098 -28.62474 -26.76280 -25.63503 -23.85550 -23.42651 -22.00336 -20.92906 -20.57933 -18.73334 -18.53688 -17.84389 -17.66055 -17.37637 -16.25628 -16.08833 -15.99300 -15.17893 -14.97020 -14.85586 -14.83097 -14.33316 -14.10937 -13.81871 -13.74664 -13.28732 -13.13267 -13.06033 -12.89350 -12.75162 -12.57509 -12.40876 -12.28241 -12.16475 -12.00827 -11.88193 -11.77033 -11.61409 -11.41672 -11.29009 -11.03080 -10.78418 -10.09235 -9.67534 -8.20394 -5.77635 1.15895 1.44278 1.53170 1.63867 1.76914 2.09451 2.34190 3.04135 3.20083 3.59740 3.73591 3.79131 4.18188 4.20285 4.27871 4.33559 4.35930 4.40167 4.48461 4.51536 4.57415 4.64964 4.73129 4.85138 4.90428 4.94080 5.01493 5.08384 5.11913 5.16407 5.20710 5.23874 5.37238 5.40450 5.46595 5.53779 5.59466 5.81355 5.92006 6.56221 6.72897 7.20646 7.70416 8.10867 8.78181 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.019437 B = 0.004921 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.200337 B = 5689.025815 C = 6756.130390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.133 3.867 3 N -0.452 5.452 4 C -0.349 4.349 5 H 0.119 0.881 6 C -0.007 4.007 7 N -0.884 5.884 8 Si 0.981 3.019 9 H -0.254 1.254 10 H -0.283 1.283 11 H -0.285 1.285 12 C 0.444 3.556 13 O -0.644 6.644 14 C -0.085 4.085 15 H 0.081 0.919 16 C -0.087 4.087 17 C -0.092 4.092 18 C -0.076 4.076 19 H 0.126 0.874 20 C 0.472 3.528 21 O -0.537 6.537 22 O -0.360 6.360 23 C 0.026 3.974 24 C -0.097 4.097 25 C -0.101 4.101 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.013 0.987 29 H 0.089 0.911 30 H 0.025 0.975 31 H 0.268 0.732 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.131 0.869 39 H 0.068 0.932 40 H 0.097 0.903 41 H 0.065 0.935 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.350 11.790 3.394 15.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.009 3.991 3 N -0.168 5.168 4 C -0.475 4.475 5 H 0.136 0.864 6 C -0.209 4.209 7 N -0.523 5.523 8 Si 0.806 3.194 9 H -0.178 1.178 10 H -0.208 1.208 11 H -0.212 1.212 12 C 0.234 3.766 13 O -0.534 6.534 14 C -0.106 4.106 15 H 0.100 0.900 16 C -0.125 4.125 17 C -0.129 4.129 18 C -0.095 4.095 19 H 0.144 0.856 20 C 0.317 3.683 21 O -0.427 6.427 22 O -0.276 6.276 23 C -0.067 4.067 24 C -0.134 4.134 25 C -0.139 4.139 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.032 0.968 29 H 0.107 0.893 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.149 0.851 39 H 0.087 0.913 40 H 0.115 0.885 41 H 0.084 0.916 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.931 11.656 3.762 15.159 hybrid contribution -0.258 -0.038 -0.812 0.853 sum 8.674 11.618 2.949 14.795 Atomic orbital electron populations 1.21731 0.96267 1.00863 0.98897 1.21162 0.94782 0.83896 0.99231 1.44093 1.55173 1.11396 1.06181 1.20225 1.36542 1.08044 0.82737 0.86401 1.26033 0.95969 0.97008 1.01862 1.70262 1.27063 1.27610 1.27317 0.85042 0.78419 0.78369 0.77600 1.17771 1.20849 1.21155 1.20852 0.82621 0.90069 0.83058 1.90472 1.59176 1.71537 1.32229 1.21039 0.98680 0.91589 0.99293 0.90031 1.21218 1.00884 0.94335 0.96032 1.21353 0.93027 0.95489 1.03059 1.21169 0.98385 0.87595 1.02330 0.85575 1.24028 0.80346 0.92802 0.71149 1.90643 1.51472 1.54020 1.46560 1.86516 1.28755 1.30145 1.82210 1.23549 1.04057 0.76514 1.02538 1.21459 1.03129 0.94415 0.94446 1.21441 0.92858 0.96591 1.03016 0.91777 0.92742 0.96829 0.89328 0.95620 0.92199 0.92890 0.91597 0.91646 0.90477 0.92152 0.91932 0.85059 0.91337 0.88479 0.91627 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 9.53 71.98 0.69 -4.99 16 2 C 0.13 6.63 5.29 86.38 0.46 7.09 16 3 N -0.45 -22.54 2.64 -635.53 -1.68 -24.22 16 4 C -0.35 -16.68 8.56 84.04 0.72 -15.96 16 5 H 0.12 5.18 4.93 -2.91 -0.01 5.17 16 6 C -0.01 -0.32 5.02 84.92 0.43 0.10 16 7 N -0.88 -43.91 8.42 21.66 0.18 -43.73 16 8 Si 0.98 37.59 29.60 68.60 2.03 39.62 16 9 H -0.25 -9.10 7.11 99.48 0.71 -8.39 16 10 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 11 H -0.29 -11.02 7.11 99.48 0.71 -10.32 16 12 C 0.44 21.23 6.79 87.66 0.60 21.82 16 13 O -0.64 -34.34 15.66 -3.09 -0.05 -34.39 16 14 C -0.08 -3.17 1.68 -11.54 -0.02 -3.19 16 15 H 0.08 3.13 7.36 -2.39 -0.02 3.12 16 16 C -0.09 -2.87 4.64 30.60 0.14 -2.73 16 17 C -0.09 -2.48 4.49 30.59 0.14 -2.34 16 18 C -0.08 -1.80 2.63 -11.54 -0.03 -1.83 16 19 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16 20 C 0.47 11.71 7.26 71.24 0.52 12.23 16 21 O -0.54 -16.14 15.73 21.94 0.35 -15.80 16 22 O -0.36 -7.60 10.47 -51.35 -0.54 -8.13 16 23 C 0.03 0.40 10.56 113.37 1.20 1.59 16 24 C -0.10 -2.34 5.14 30.58 0.16 -2.19 16 25 C -0.10 -3.14 4.88 30.58 0.15 -2.99 16 26 H 0.06 3.27 6.57 -2.39 -0.02 3.25 16 27 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.09 4.56 5.82 -2.39 -0.01 4.55 16 30 H 0.03 1.30 7.54 -2.39 -0.02 1.28 16 31 H 0.27 12.65 8.31 -92.71 -0.77 11.88 16 32 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 2.23 7.92 -2.39 -0.02 2.21 16 34 H 0.06 1.85 8.10 -2.39 -0.02 1.83 16 35 H 0.08 1.97 8.10 -2.39 -0.02 1.95 16 36 H 0.06 0.93 8.13 -2.39 -0.02 0.92 16 37 H 0.06 0.92 8.13 -2.38 -0.02 0.90 16 38 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.10 1.97 8.11 -2.39 -0.02 1.95 16 41 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.08 2.54 6.09 -2.39 -0.01 2.53 16 Total: -1.00 -61.77 332.40 6.43 -55.33 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 1.00 Total: 24.69 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 5.13 Total: 6.62 kcal Atomic # 7 Polarization: -66.45 SS G_CDS: -1.49 Total: -67.95 kcal Atomic # 8 Polarization: -58.08 SS G_CDS: -0.24 Total: -58.32 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 2.03 Total: 39.62 kcal Total: -61.77 6.43 -55.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000436125684.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.516 kcal (2) G-P(sol) polarization free energy of solvation -61.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds