Wall clock time and date at job start Tue Mar 31 2020 06:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45203 * 109.46790 * 2 1 4 4 C 1.34230 * 117.00044 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99890 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00184 * 180.02562 * 4 3 2 7 7 H 1.08997 * 110.54482 * 86.69988 * 6 4 3 8 8 C 1.54894 * 110.48399 * 324.08728 * 6 4 3 9 9 C 1.54886 * 102.91401 * 203.47287 * 8 6 4 10 10 C 1.54265 * 104.19920 * 37.85241 * 9 8 6 11 11 C 1.53881 * 106.59479 * 336.38664 * 10 9 8 12 12 H 1.08999 * 110.02973 * 240.66498 * 11 10 9 13 13 N 1.46504 * 110.02804 * 119.28693 * 11 10 9 14 14 C 1.34769 * 119.99991 * 88.48146 * 13 11 10 15 15 O 1.21285 * 120.00363 * 359.97438 * 14 13 11 16 16 C 1.50701 * 120.00016 * 179.97438 * 14 13 11 17 17 C 1.52996 * 109.47158 * 179.97438 * 16 14 13 18 18 C 1.50709 * 109.46936 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00039 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99568 * 180.02562 * 18 17 16 21 21 N 1.31507 * 120.00496 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99730 * 180.02562 * 20 18 17 23 23 H 1.48509 * 109.47046 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47446 * 119.99793 * 22 20 18 25 25 H 1.48502 * 109.46991 * 240.00376 * 22 20 18 26 26 H 1.08998 * 109.47407 * 299.99922 * 1 2 3 27 27 H 1.08995 * 109.46972 * 60.00910 * 1 2 3 28 28 H 1.09008 * 109.46390 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47407 * 240.00078 * 2 1 3 30 30 H 1.09004 * 109.47392 * 119.99518 * 2 1 3 31 31 H 1.08996 * 110.75236 * 85.06856 * 8 6 4 32 32 H 1.08995 * 110.75602 * 321.87848 * 8 6 4 33 33 H 1.09004 * 110.48770 * 156.53064 * 9 8 6 34 34 H 1.08998 * 110.48686 * 279.17135 * 9 8 6 35 35 H 1.08995 * 110.03518 * 95.67438 * 10 9 8 36 36 H 1.09002 * 110.03188 * 217.05812 * 10 9 8 37 37 H 0.97005 * 119.99839 * 268.47787 * 13 11 10 38 38 H 1.09001 * 109.47393 * 299.99783 * 16 14 13 39 39 H 1.09006 * 109.47123 * 59.99819 * 16 14 13 40 40 H 1.08993 * 109.47833 * 299.99906 * 17 16 14 41 41 H 1.09000 * 109.46831 * 60.00582 * 17 16 14 42 42 H 0.97003 * 120.00383 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5450 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9206 2.9375 0.0000 7 1 4.0130 3.3129 1.0191 8 6 3.0414 3.8881 -0.8501 9 6 4.0292 5.0145 -1.2429 10 6 5.3602 4.2781 -1.4998 11 6 5.2930 2.9600 -0.7085 12 1 6.0964 2.9249 0.0272 13 7 5.3998 1.8201 -1.6226 14 6 6.6118 1.3280 -1.9472 15 8 7.6140 1.8290 -1.4830 16 6 6.7217 0.1551 -2.8870 17 6 8.1960 -0.2015 -3.0874 18 6 8.3059 -1.3741 -4.0277 19 1 7.4134 -1.8206 -4.4407 20 6 9.5458 -1.8775 -4.3599 21 7 10.6324 -1.3348 -3.8558 22 14 9.6821 -3.3304 -5.5260 23 1 8.3233 -3.7543 -5.9497 24 1 10.4723 -2.9349 -6.7195 25 1 10.3587 -4.4576 -4.8354 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0278 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.2178 4.2859 -0.2572 32 1 2.6658 3.3772 -1.7366 33 1 3.6917 5.5194 -2.1481 34 1 4.1392 5.7275 -0.4258 35 1 5.4723 4.0697 -2.5637 36 1 6.1957 4.8834 -1.1480 37 1 4.5983 1.4196 -1.9942 38 1 6.1949 -0.7003 -2.4639 39 1 6.2776 0.4163 -3.8476 40 1 8.7224 0.6538 -3.5108 41 1 8.6403 -0.4627 -2.1269 42 1 11.5047 -1.6887 -4.0897 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456396594.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:25 Heat of formation + Delta-G solvation = -141.071287 kcal Electronic energy + Delta-G solvation = -22796.392296 eV Core-core repulsion = 19354.889114 eV Total energy + Delta-G solvation = -3441.503182 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.07248 -39.24793 -37.61075 -36.61397 -33.38019 -33.16739 -32.04086 -30.87165 -29.72113 -27.92890 -25.43573 -23.99453 -22.39434 -21.71463 -20.93093 -19.79884 -19.73193 -17.68749 -17.15494 -16.79790 -16.56458 -15.89400 -15.27621 -15.02918 -14.65203 -14.46547 -14.33192 -14.11412 -13.51896 -13.20515 -13.01798 -12.68947 -12.32207 -12.26275 -12.13312 -11.87285 -11.65050 -11.53725 -11.33992 -11.17832 -11.06586 -10.89486 -10.78732 -10.73138 -10.52613 -10.38880 -9.86525 -9.57649 -9.07679 -8.89840 -8.63900 -8.26048 -5.90246 -3.94022 2.05442 2.42665 3.36155 3.39284 3.42795 3.46477 3.62157 4.06506 4.27379 4.49455 4.53294 4.66183 4.70885 4.85297 5.01074 5.07267 5.11640 5.21212 5.33306 5.44509 5.44603 5.46534 5.48027 5.62055 5.65336 5.70417 5.78254 5.92093 6.07546 6.18839 6.26899 6.33599 6.39556 6.86064 7.00061 7.61449 7.81686 7.95637 7.99266 8.14730 8.46484 8.92202 9.15145 9.68978 11.20836 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.017676 B = 0.003936 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.733260 B = 7111.893457 C = 8294.360355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.359 6.359 4 C 0.461 3.539 5 O -0.483 6.483 6 C -0.096 4.096 7 H 0.125 0.875 8 C -0.112 4.112 9 C -0.124 4.124 10 C -0.136 4.136 11 C 0.158 3.842 12 H 0.098 0.902 13 N -0.728 5.728 14 C 0.518 3.482 15 O -0.538 6.538 16 C -0.129 4.129 17 C 0.038 3.962 18 C -0.524 4.524 19 H 0.055 0.945 20 C 0.057 3.943 21 N -0.890 5.890 22 Si 0.892 3.108 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.392 0.608 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.837 10.787 8.213 26.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.276 6.276 4 C 0.302 3.698 5 O -0.368 6.368 6 C -0.115 4.115 7 H 0.143 0.857 8 C -0.149 4.149 9 C -0.162 4.162 10 C -0.175 4.175 11 C 0.052 3.948 12 H 0.116 0.884 13 N -0.382 5.382 14 C 0.306 3.694 15 O -0.413 6.413 16 C -0.169 4.169 17 C 0.000 4.000 18 C -0.563 4.563 19 H 0.074 0.926 20 C -0.144 4.144 21 N -0.529 5.529 22 Si 0.720 3.280 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.226 0.774 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.041 0.959 41 H 0.042 0.958 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -21.684 10.790 8.549 25.685 hybrid contribution -0.241 -1.233 -0.694 1.435 sum -21.926 9.557 7.855 25.175 Atomic orbital electron populations 1.21797 0.92658 1.02995 1.03373 1.23047 0.95282 0.80234 1.02911 1.86508 1.24583 1.32366 1.84160 1.23504 0.80659 0.92414 0.73214 1.90794 1.60059 1.42668 1.43273 1.22357 0.96148 0.89679 1.03339 0.85734 1.22511 0.97357 0.95639 0.99438 1.22381 0.94690 0.97281 1.01799 1.22661 0.97822 0.95468 1.01523 1.21370 0.94629 0.86659 0.92163 0.88371 1.46225 1.09212 1.33823 1.48970 1.21422 0.82021 0.84508 0.81399 1.90646 1.36071 1.60685 1.53929 1.21835 1.04300 0.94036 0.96722 1.18890 0.87184 0.96441 0.97466 1.21280 0.92332 1.15083 1.27570 0.92632 1.25023 0.95930 0.97090 0.96379 1.70012 0.97649 1.41177 1.44066 0.86547 0.78013 0.82652 0.80810 1.19788 1.21037 1.21045 0.91615 0.91470 0.90246 0.90945 0.91229 0.90161 0.90660 0.90972 0.91092 0.90547 0.90564 0.77403 0.90299 0.90609 0.95866 0.95829 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.29 37.16 0.38 -0.52 16 2 C 0.06 0.52 6.19 37.16 0.23 0.75 16 3 O -0.36 -3.61 9.70 -39.26 -0.38 -3.99 16 4 C 0.46 5.43 6.31 36.00 0.23 5.66 16 5 O -0.48 -7.53 14.34 -18.75 -0.27 -7.80 16 6 C -0.10 -0.93 3.35 -90.01 -0.30 -1.23 16 7 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 8 C -0.11 -0.84 5.91 -24.74 -0.15 -0.98 16 9 C -0.12 -0.93 6.83 -25.07 -0.17 -1.11 16 10 C -0.14 -1.49 6.59 -25.61 -0.17 -1.66 16 11 C 0.16 2.04 2.98 -66.70 -0.20 1.85 16 12 H 0.10 1.48 7.54 -51.93 -0.39 1.09 16 13 N -0.73 -11.47 3.33 -52.61 -0.18 -11.65 16 14 C 0.52 10.80 7.83 -10.99 -0.09 10.71 16 15 O -0.54 -13.27 15.63 5.55 0.09 -13.18 16 16 C -0.13 -2.86 5.64 -27.88 -0.16 -3.01 16 17 C 0.04 1.07 4.26 -27.88 -0.12 0.95 16 18 C -0.52 -15.47 9.11 -34.44 -0.31 -15.78 16 19 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -28.16 13.29 55.43 0.74 -27.43 16 22 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 30 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.59 8.05 -51.93 -0.42 0.17 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.94 7.92 -51.93 -0.41 0.53 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.39 5.53 7.05 -40.82 -0.29 5.24 16 38 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 39 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 41 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 42 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 348.39 15.07 5.25 5.25 Total: -1.00 -36.19 348.39 -7.66 -43.84 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.96 Total: 0.50 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -0.92 Total: -2.77 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.56 Total: -39.07 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.56 Total: -24.97 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.19 -7.66 -43.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456396594.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.229 kcal (2) G-P(sol) polarization free energy of solvation -36.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds