Wall clock time and date at job start Tue Mar 31 2020 05:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47105 * 2 1 4 4 H 1.08998 * 109.46771 * 174.05959 * 3 2 1 5 5 C 1.50703 * 109.47014 * 54.06964 * 3 2 1 6 6 H 1.08004 * 119.99343 * 240.00060 * 5 3 2 7 7 C 1.37871 * 120.00056 * 59.99519 * 5 3 2 8 8 N 1.31514 * 120.00237 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99743 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47280 * 59.99839 * 9 7 5 11 11 H 1.48499 * 109.46914 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46805 * 299.99727 * 9 7 5 13 13 N 1.46895 * 109.47556 * 294.06397 * 3 2 1 14 14 C 1.46895 * 110.99994 * 275.51854 * 13 3 2 15 15 C 1.52998 * 109.47199 * 176.73023 * 14 13 3 16 16 H 1.09001 * 109.47174 * 59.99481 * 15 14 13 17 17 O 1.42904 * 109.47049 * 299.99751 * 15 14 13 18 18 C 1.52998 * 109.47426 * 179.97438 * 15 14 13 19 19 O 1.42902 * 109.47514 * 184.99787 * 18 15 14 20 20 C 1.42900 * 114.00312 * 179.97438 * 19 18 15 21 21 C 1.50696 * 109.47134 * 180.02562 * 20 19 18 22 22 C 1.34509 * 125.79610 * 89.71354 * 21 20 19 23 23 C 1.41379 * 106.84500 * 179.89100 * 22 21 20 24 24 C 1.34510 * 106.84038 * 0.36993 * 23 22 21 25 25 O 1.34306 * 125.78468 * 270.02041 * 21 20 19 26 26 H 1.09005 * 109.47053 * 58.59566 * 1 2 3 27 27 H 1.08996 * 109.46665 * 298.60075 * 1 2 3 28 28 H 1.09000 * 109.47270 * 178.59706 * 1 2 3 29 29 H 1.09003 * 109.47322 * 120.00411 * 2 1 3 30 30 H 1.09007 * 109.46731 * 240.00331 * 2 1 3 31 31 H 0.97007 * 119.99872 * 180.02562 * 8 7 5 32 32 H 1.00905 * 110.99615 * 39.46781 * 13 3 2 33 33 H 1.09002 * 109.47243 * 296.72722 * 14 13 3 34 34 H 1.09001 * 109.47481 * 56.72691 * 14 13 3 35 35 H 0.96698 * 113.99647 * 299.99628 * 17 15 14 36 36 H 1.09003 * 109.46872 * 304.99940 * 18 15 14 37 37 H 1.09001 * 109.47134 * 64.99604 * 18 15 14 38 38 H 1.09001 * 109.46999 * 299.99923 * 20 19 18 39 39 H 1.08999 * 109.47197 * 60.00070 * 20 19 18 40 40 H 1.08005 * 126.57323 * 0.02562 * 22 21 20 41 41 H 1.08001 * 126.57824 * 180.16729 * 23 22 21 42 42 H 1.08002 * 125.79181 * 179.75244 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1248 1.4443 0.1064 5 6 1.4214 2.1940 1.1505 6 1 0.8145 3.0672 0.9611 7 6 1.6300 1.7669 2.4447 8 7 2.3693 0.7039 2.6752 9 14 0.8625 2.6981 3.8707 10 1 -0.6153 2.6951 3.7257 11 1 1.2364 2.0414 5.1491 12 1 1.3571 4.0984 3.8709 13 7 1.6709 2.0925 -1.2645 14 6 2.6553 1.7987 -2.3145 15 6 2.1960 2.4232 -3.6335 16 1 2.1051 3.5026 -3.5123 17 8 0.9282 1.8770 -4.0030 18 6 3.2216 2.1178 -4.7269 19 8 2.8531 2.7971 -5.9290 20 6 3.7508 2.5780 -7.0190 21 6 3.2683 3.3378 -8.2276 22 6 3.5994 4.6020 -8.5460 23 6 2.9279 4.9103 -9.7514 24 6 2.2199 3.8188 -10.0931 25 8 2.4299 2.8694 -9.1666 26 1 -0.3633 0.5355 -0.8772 27 1 -0.3632 0.4919 0.9023 28 1 -0.3634 -1.0273 -0.0252 29 1 1.8934 -0.5139 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 2.5158 0.4032 3.5858 32 1 0.7428 1.8213 -1.5530 33 1 3.6224 2.2153 -2.0327 34 1 2.7462 0.7193 -2.4357 35 1 0.9345 0.9182 -4.1282 36 1 4.2068 2.4561 -4.4057 37 1 3.2483 1.0436 -4.9102 38 1 4.7467 2.9263 -6.7451 39 1 3.7889 1.5135 -7.2500 40 1 4.2546 5.2555 -7.9890 41 1 2.9719 5.8442 -10.2920 42 1 1.5893 3.7223 -10.9646 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516936499.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:53 Heat of formation + Delta-G solvation = -82.997327 kcal Electronic energy + Delta-G solvation = -21927.210373 eV Core-core repulsion = 18488.225467 eV Total energy + Delta-G solvation = -3438.984906 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.76446 -38.71786 -37.15457 -35.71174 -33.26157 -32.53679 -31.46388 -30.76246 -29.09495 -26.61630 -25.79006 -23.97508 -23.07771 -21.99205 -21.42595 -20.72424 -19.28935 -17.76571 -17.22912 -16.50076 -16.38977 -16.01152 -15.69445 -15.19413 -14.99434 -14.73351 -14.06090 -13.92983 -13.29166 -13.06107 -13.05102 -12.90635 -12.59239 -12.36394 -12.27751 -11.99334 -11.74886 -11.51912 -10.92294 -10.78036 -10.61353 -10.50406 -10.16845 -10.10437 -9.96920 -9.87106 -9.64041 -9.51355 -8.96780 -8.78710 -8.33201 -7.21298 -5.96620 -3.97837 1.38794 2.32791 2.69737 3.36049 3.39853 3.43709 3.63668 4.41069 4.47788 4.60038 4.73140 4.77160 4.89256 4.98703 5.04618 5.13032 5.31566 5.35260 5.44360 5.54935 5.56503 5.67713 5.80246 5.82002 6.14132 6.23797 6.33358 6.35227 6.41781 6.58168 6.89294 6.89405 6.93134 7.26619 7.29453 7.51962 7.70055 7.84761 7.90298 8.28710 8.57633 8.64005 9.07918 9.65868 11.10578 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.037805 B = 0.002596 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.468932 B =10784.647228 C =10973.529202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.145 4.145 3 C 0.215 3.785 4 H 0.031 0.969 5 C -0.488 4.488 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.679 5.679 14 C 0.033 3.967 15 C 0.112 3.888 16 H 0.112 0.888 17 O -0.550 6.550 18 C 0.031 3.969 19 O -0.371 6.371 20 C 0.141 3.859 21 C -0.014 4.014 22 C -0.187 4.187 23 C -0.218 4.218 24 C -0.034 4.034 25 O -0.171 6.171 26 H 0.032 0.968 27 H 0.066 0.934 28 H 0.021 0.979 29 H 0.092 0.908 30 H 0.008 0.992 31 H 0.259 0.741 32 H 0.335 0.665 33 H 0.073 0.927 34 H 0.022 0.978 35 H 0.367 0.633 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.699 1.974 -21.999 22.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.184 4.184 3 C 0.107 3.893 4 H 0.049 0.951 5 C -0.527 4.527 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.538 5.538 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.312 5.312 14 C -0.098 4.098 15 C 0.052 3.948 16 H 0.130 0.870 17 O -0.354 6.354 18 C -0.046 4.046 19 O -0.290 6.290 20 C 0.064 3.936 21 C -0.064 4.064 22 C -0.207 4.207 23 C -0.237 4.237 24 C -0.102 4.102 25 O -0.067 6.067 26 H 0.051 0.949 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.110 0.890 30 H 0.027 0.973 31 H 0.069 0.931 32 H 0.155 0.845 33 H 0.092 0.908 34 H 0.040 0.960 35 H 0.213 0.787 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.168 0.832 41 H 0.167 0.833 42 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 3.592 2.928 -21.626 22.117 hybrid contribution -0.007 -1.019 0.501 1.136 sum 3.585 1.909 -21.125 21.512 Atomic orbital electron populations 1.21572 0.97545 0.97995 1.01477 1.22104 0.95170 1.01115 1.00026 1.19212 0.95957 0.88666 0.85421 0.95089 1.21030 1.30453 1.11533 0.89714 0.92033 1.24910 0.95576 0.95191 0.98705 1.69875 1.39309 1.24183 1.20389 0.86616 0.79672 0.80016 0.81423 1.20344 1.21549 1.20335 1.60773 1.04269 1.63186 1.02964 1.22460 0.98298 0.97130 0.91863 1.22060 0.82276 1.00447 0.90009 0.86991 1.86651 1.31410 1.25879 1.91428 1.23380 0.99461 0.96261 0.85470 1.88066 1.49787 1.71701 1.19465 1.20614 0.92477 0.98178 0.82306 1.21978 0.96856 0.95053 0.92514 1.21669 1.04976 0.95463 0.98563 1.21863 1.02374 1.00539 0.98960 1.24095 1.03329 0.87605 0.95203 1.84026 1.52107 1.40690 1.29892 0.94919 0.91520 0.95941 0.89001 0.97282 0.93095 0.84499 0.90843 0.96042 0.78690 0.91939 0.92880 0.90045 0.91630 0.83217 0.83275 0.77962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.39 37.16 0.35 -2.41 16 2 C -0.14 -3.34 5.50 -26.73 -0.15 -3.49 16 3 C 0.22 5.27 2.33 -68.86 -0.16 5.11 16 4 H 0.03 0.84 7.85 -51.93 -0.41 0.43 16 5 C -0.49 -13.25 7.35 -34.44 -0.25 -13.50 16 6 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 7 C 0.06 1.54 5.22 -17.82 -0.09 1.45 16 8 N -0.90 -25.22 11.39 55.43 0.63 -24.59 16 9 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 13 N -0.68 -14.30 6.25 -107.96 -0.67 -14.97 16 14 C 0.03 0.56 5.19 -3.83 -0.02 0.54 16 15 C 0.11 1.64 3.52 -26.73 -0.09 1.54 16 16 H 0.11 1.81 8.14 -51.93 -0.42 1.39 16 17 O -0.55 -8.50 12.59 -40.05 -0.50 -9.00 16 18 C 0.03 0.37 5.57 37.16 0.21 0.58 16 19 O -0.37 -4.91 10.29 -40.05 -0.41 -5.32 16 20 C 0.14 1.43 6.47 36.00 0.23 1.66 16 21 C -0.01 -0.16 6.95 -35.63 -0.25 -0.41 16 22 C -0.19 -1.96 10.81 -39.71 -0.43 -2.39 16 23 C -0.22 -1.99 10.91 -39.71 -0.43 -2.43 16 24 C -0.03 -0.31 12.09 29.41 0.36 0.05 16 25 O -0.17 -2.01 10.65 5.68 0.06 -1.95 16 26 H 0.03 0.64 6.42 -51.93 -0.33 0.31 16 27 H 0.07 1.58 7.04 -51.93 -0.37 1.21 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 2.39 6.25 -51.93 -0.32 2.06 16 30 H 0.01 0.18 7.26 -51.92 -0.38 -0.20 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.34 6.98 5.91 -39.29 -0.23 6.74 16 33 H 0.07 1.23 8.12 -51.93 -0.42 0.81 16 34 H 0.02 0.35 7.26 -51.93 -0.38 -0.03 16 35 H 0.37 4.43 9.05 45.56 0.41 4.84 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.15 1.31 8.06 -52.48 -0.42 0.88 16 41 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.20 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 347.64 15.07 5.24 5.24 Total: -1.00 -31.35 347.64 -7.19 -38.54 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -5.78 Total: 9.35 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -0.73 Total: -13.69 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: -0.04 Total: -39.56 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.86 Total: -16.27 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.35 -7.19 -38.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516936499.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.459 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds