Wall clock time and date at job start Tue Mar 31 2020 05:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46934 * 2 1 4 4 H 1.08996 * 109.47339 * 54.59004 * 3 2 1 5 5 C 1.50705 * 109.46998 * 174.58607 * 3 2 1 6 6 H 1.08000 * 119.99759 * 120.00458 * 5 3 2 7 7 C 1.37872 * 119.99933 * 299.72403 * 5 3 2 8 8 N 1.31517 * 120.00037 * 180.27518 * 7 5 3 9 9 Si 1.86796 * 120.00098 * 0.27515 * 7 5 3 10 10 H 1.48499 * 109.47325 * 90.00334 * 9 7 5 11 11 H 1.48505 * 109.47502 * 210.00010 * 9 7 5 12 12 H 1.48501 * 109.47337 * 329.99969 * 9 7 5 13 13 N 1.46896 * 109.47232 * 294.58532 * 3 2 1 14 14 C 1.46897 * 111.00085 * 154.53891 * 13 3 2 15 15 C 1.53004 * 109.47375 * 174.71006 * 14 13 3 16 16 H 1.09001 * 109.46813 * 304.99751 * 15 14 13 17 17 O 1.42901 * 109.47126 * 64.99569 * 15 14 13 18 18 C 1.52991 * 109.47397 * 184.99719 * 15 14 13 19 19 O 1.42905 * 109.47387 * 174.99950 * 18 15 14 20 20 C 1.42897 * 113.99953 * 180.02562 * 19 18 15 21 21 C 1.50702 * 109.46894 * 179.97438 * 20 19 18 22 22 C 1.34516 * 125.78987 * 89.71570 * 21 20 19 23 23 C 1.41382 * 106.84201 * 179.89382 * 22 21 20 24 24 C 1.34516 * 106.83870 * 0.36748 * 23 22 21 25 25 O 1.34298 * 108.42101 * 359.77499 * 24 23 22 26 26 H 1.09005 * 109.46844 * 65.81732 * 1 2 3 27 27 H 1.08996 * 109.46544 * 185.81447 * 1 2 3 28 28 H 1.08994 * 109.47409 * 305.82061 * 1 2 3 29 29 H 1.09000 * 109.47469 * 239.99665 * 2 1 3 30 30 H 1.09002 * 109.47051 * 119.99195 * 2 1 3 31 31 H 0.97004 * 119.99842 * 179.97438 * 8 7 5 32 32 H 1.00900 * 110.99873 * 30.57866 * 13 3 2 33 33 H 1.09004 * 109.46645 * 294.70366 * 14 13 3 34 34 H 1.08991 * 109.47471 * 54.70831 * 14 13 3 35 35 H 0.96696 * 113.99965 * 59.99991 * 17 15 14 36 36 H 1.09003 * 109.47309 * 294.99953 * 18 15 14 37 37 H 1.09003 * 109.47534 * 54.99657 * 18 15 14 38 38 H 1.08999 * 109.47160 * 299.99402 * 20 19 18 39 39 H 1.08997 * 109.47722 * 59.99994 * 20 19 18 40 40 H 1.08006 * 126.57769 * 0.02562 * 22 21 20 41 41 H 1.08004 * 126.58136 * 180.16869 * 23 22 21 42 42 H 1.07998 * 125.78801 * 179.75880 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5997 1.9836 0.8375 5 6 3.5411 1.4447 0.1341 6 1 4.1516 1.8875 -0.6390 7 6 4.1346 0.8865 1.2463 8 7 5.4443 0.8932 1.3658 9 14 3.0786 0.1208 2.5834 10 1 2.8649 -1.3176 2.2825 11 1 3.7642 0.2558 3.8938 12 1 1.7672 0.8155 2.6370 13 7 1.6599 2.0963 -1.2594 14 6 1.5693 3.5526 -1.0901 15 6 1.3022 4.2082 -2.4466 16 1 2.0699 3.9001 -3.1564 17 8 0.0189 3.8028 -2.9271 18 6 1.3315 5.7300 -2.2922 19 8 1.1982 6.3418 -3.5768 20 6 1.2142 7.7703 -3.5446 21 6 1.0683 8.3059 -4.9457 22 6 -0.0929 8.5899 -5.5624 23 6 0.2343 9.0656 -6.8529 24 6 1.5756 9.0362 -6.9506 25 8 2.0754 8.5752 -5.7925 26 1 -0.3633 0.4210 -0.9375 27 1 -0.3632 -1.0224 0.1041 28 1 -0.3634 0.6014 0.8332 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 5.8619 0.5008 2.1486 32 1 0.7947 1.7190 -1.6158 33 1 0.7544 3.7888 -0.4058 34 1 2.5070 3.9302 -0.6826 35 1 -0.7137 4.0445 -2.3441 36 1 0.5079 6.0462 -1.6520 37 1 2.2776 6.0315 -1.8425 38 1 0.3884 8.1292 -2.9303 39 1 2.1580 8.1138 -3.1212 40 1 -1.0849 8.4782 -5.1499 41 1 -0.4597 9.3876 -7.6153 42 1 2.1526 9.3327 -7.8140 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516936500.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:56 Heat of formation + Delta-G solvation = -75.713455 kcal Electronic energy + Delta-G solvation = -21949.490548 eV Core-core repulsion = 18510.821494 eV Total energy + Delta-G solvation = -3438.669053 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.73658 -38.68907 -37.16888 -35.88647 -33.23457 -32.45202 -31.83007 -31.23596 -29.28140 -27.23945 -25.93584 -24.09226 -22.44036 -21.96481 -21.34684 -20.69742 -19.82035 -17.73323 -17.17708 -16.84316 -16.41042 -16.29106 -15.71550 -15.27336 -15.07712 -14.73958 -14.49105 -13.93312 -13.46946 -13.07164 -13.03488 -12.90006 -12.84047 -12.51014 -12.41710 -12.11225 -11.86663 -11.75433 -11.42588 -11.09004 -10.69371 -10.55585 -10.31715 -10.13801 -10.05246 -9.84104 -9.75269 -9.38852 -9.21747 -8.76463 -8.53672 -7.39794 -6.05302 -4.02494 1.41955 2.35266 2.72911 3.24616 3.34118 3.36601 3.66199 4.39132 4.45290 4.60204 4.75442 4.79951 4.90370 5.01251 5.04302 5.13387 5.22297 5.32878 5.47200 5.52353 5.57514 5.67634 5.69858 5.76300 5.82111 5.84966 5.96413 6.26288 6.27951 6.36555 6.47167 6.59985 6.70315 6.79314 6.92540 6.96486 7.16408 7.70202 7.82337 7.93992 8.26523 8.75288 9.06878 9.57657 11.08074 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.029956 B = 0.002878 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.482470 B = 9727.167503 C =10293.726477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.135 4.135 3 C 0.190 3.810 4 H -0.001 1.001 5 C -0.497 4.497 6 H 0.081 0.919 7 C 0.066 3.934 8 N -0.901 5.901 9 Si 0.883 3.117 10 H -0.278 1.278 11 H -0.298 1.298 12 H -0.269 1.269 13 N -0.669 5.669 14 C 0.041 3.959 15 C 0.112 3.888 16 H 0.116 0.884 17 O -0.552 6.552 18 C 0.032 3.968 19 O -0.371 6.371 20 C 0.140 3.860 21 C -0.013 4.013 22 C -0.188 4.188 23 C -0.219 4.219 24 C -0.034 4.034 25 O -0.171 6.171 26 H 0.052 0.948 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.263 0.737 32 H 0.326 0.674 33 H 0.019 0.981 34 H 0.089 0.911 35 H 0.364 0.636 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.510 15.291 -9.985 22.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.173 4.173 3 C 0.081 3.919 4 H 0.017 0.983 5 C -0.536 4.536 6 H 0.099 0.901 7 C -0.135 4.135 8 N -0.540 5.540 9 Si 0.713 3.287 10 H -0.205 1.205 11 H -0.225 1.225 12 H -0.194 1.194 13 N -0.301 5.301 14 C -0.089 4.089 15 C 0.053 3.947 16 H 0.134 0.866 17 O -0.356 6.356 18 C -0.046 4.046 19 O -0.290 6.290 20 C 0.064 3.936 21 C -0.063 4.063 22 C -0.207 4.207 23 C -0.238 4.238 24 C -0.102 4.102 25 O -0.066 6.066 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.145 0.855 33 H 0.037 0.963 34 H 0.107 0.893 35 H 0.210 0.790 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.167 0.833 41 H 0.167 0.833 42 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -11.054 14.868 -10.687 21.388 hybrid contribution -1.719 0.034 1.909 2.569 sum -12.773 14.902 -8.778 21.501 Atomic orbital electron populations 1.21916 0.98148 1.00608 1.00788 1.22112 0.93011 1.00350 1.01852 1.19634 0.96886 0.89358 0.85997 0.98310 1.21052 0.89117 1.37635 1.05778 0.90092 1.24970 0.94773 0.95982 0.97797 1.69891 1.08814 1.45916 1.29334 0.86936 0.80635 0.79876 0.81213 1.20543 1.22526 1.19373 1.60338 1.36965 1.01429 1.31403 1.22409 1.01377 0.91295 0.93844 1.22083 0.86372 0.88841 0.97418 0.86649 1.86657 1.15640 1.82288 1.51003 1.23360 1.01101 0.95351 0.84744 1.88058 1.94676 1.16936 1.29373 1.20615 1.02200 0.82571 0.88229 1.21988 0.85823 1.04892 0.93610 1.21646 0.98763 1.05206 0.95097 1.21858 0.95717 1.07610 0.98653 1.24099 0.94512 1.02943 0.88618 1.84032 1.36381 1.64082 1.22133 0.92930 0.93581 0.93700 0.91220 0.92837 0.92717 0.85518 0.96323 0.89277 0.78983 0.92958 0.91664 0.90167 0.91437 0.83309 0.83311 0.77955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.64 37.16 0.36 -2.32 16 2 C -0.14 -2.90 5.01 -26.73 -0.13 -3.03 16 3 C 0.19 4.39 1.61 -68.86 -0.11 4.27 16 4 H 0.00 -0.01 6.90 -51.93 -0.36 -0.37 16 5 C -0.50 -13.90 9.14 -34.44 -0.31 -14.21 16 6 H 0.08 2.51 8.06 -52.49 -0.42 2.08 16 7 C 0.07 1.89 5.45 -17.82 -0.10 1.79 16 8 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 9 Si 0.88 21.75 24.41 -169.99 -4.15 17.60 16 10 H -0.28 -6.71 6.83 56.52 0.39 -6.32 16 11 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.27 -6.31 6.52 56.52 0.37 -5.94 16 13 N -0.67 -13.46 6.27 -107.95 -0.68 -14.13 16 14 C 0.04 0.70 5.12 -3.82 -0.02 0.68 16 15 C 0.11 1.67 3.49 -26.73 -0.09 1.57 16 16 H 0.12 1.97 8.14 -51.93 -0.42 1.55 16 17 O -0.55 -8.02 12.92 -40.08 -0.52 -8.54 16 18 C 0.03 0.39 5.57 37.15 0.21 0.59 16 19 O -0.37 -5.06 10.29 -40.08 -0.41 -5.47 16 20 C 0.14 1.49 6.47 36.01 0.23 1.72 16 21 C -0.01 -0.15 6.95 -35.62 -0.25 -0.40 16 22 C -0.19 -1.99 10.81 -39.70 -0.43 -2.42 16 23 C -0.22 -2.05 10.91 -39.70 -0.43 -2.48 16 24 C -0.03 -0.31 12.09 29.42 0.36 0.04 16 25 O -0.17 -2.08 10.65 5.72 0.06 -2.02 16 26 H 0.05 0.81 6.65 -51.93 -0.35 0.46 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 30 H 0.05 1.22 3.24 -51.93 -0.17 1.06 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.33 5.99 6.27 -39.29 -0.25 5.74 16 33 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.09 1.67 7.93 -51.93 -0.41 1.26 16 35 H 0.36 3.85 9.04 45.56 0.41 4.26 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.15 1.31 8.06 -52.48 -0.42 0.88 16 41 H 0.15 1.01 8.06 -52.48 -0.42 0.59 16 42 H 0.20 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 345.07 15.07 5.20 5.20 Total: -1.00 -33.52 345.07 -6.25 -39.77 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -5.80 Total: 8.55 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -0.73 Total: -14.19 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.10 Total: -40.89 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.87 Total: -16.03 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.15 Total: 17.60 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.52 -6.25 -39.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516936500.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.947 kcal (2) G-P(sol) polarization free energy of solvation -33.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds