Wall clock time and date at job start Tue Mar 31 2020 06:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34232 * 116.99567 * 2 1 4 4 O 1.20818 * 120.00128 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99728 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47107 * 180.02562 * 5 3 2 7 7 H 1.08990 * 109.47059 * 55.00369 * 6 5 3 8 8 C 1.52996 * 109.46991 * 294.99804 * 6 5 3 9 9 C 1.50707 * 109.46863 * 175.00136 * 6 5 3 10 10 O 1.21284 * 119.99901 * 94.73747 * 9 6 5 11 11 N 1.34771 * 119.99852 * 274.73318 * 9 6 5 12 12 C 1.46921 * 120.63446 * 4.94784 * 11 9 6 13 13 C 1.53629 * 108.54513 * 126.36513 * 12 11 9 14 14 C 1.53035 * 109.23747 * 54.85716 * 13 12 11 15 15 C 1.50708 * 109.44989 * 178.49502 * 14 13 12 16 16 H 1.07996 * 119.99717 * 120.06353 * 15 14 13 17 17 C 1.37873 * 119.99689 * 300.07006 * 15 14 13 18 18 N 1.31509 * 120.00545 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99476 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47271 * 59.99734 * 19 17 15 21 21 H 1.48505 * 109.46835 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46937 * 299.99511 * 19 17 15 23 23 C 1.53037 * 109.54498 * 298.51056 * 14 13 12 24 24 C 1.46929 * 120.62787 * 185.22877 * 11 9 6 25 25 H 1.09008 * 109.47245 * 299.99497 * 1 2 3 26 26 H 1.08996 * 109.47771 * 59.99939 * 1 2 3 27 27 H 1.09007 * 109.47060 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47378 * 300.00212 * 5 3 2 29 29 H 1.09006 * 109.47081 * 60.00027 * 5 3 2 30 30 H 1.08997 * 109.47304 * 55.13184 * 8 6 5 31 31 H 1.09000 * 109.47350 * 175.12877 * 8 6 5 32 32 H 1.09003 * 109.47781 * 295.13335 * 8 6 5 33 33 H 1.08993 * 109.59050 * 246.20319 * 12 11 9 34 34 H 1.09003 * 109.58632 * 6.62818 * 12 11 9 35 35 H 1.08999 * 109.63000 * 294.87091 * 13 12 11 36 36 H 1.08996 * 109.43209 * 174.72972 * 13 12 11 37 37 H 1.09005 * 109.46107 * 58.53653 * 14 13 12 38 38 H 0.97003 * 120.00106 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.49716 * 301.42000 * 23 14 13 40 40 H 1.09000 * 109.52904 * 181.33295 * 23 14 13 41 41 H 1.09003 * 109.58905 * 353.37149 * 24 11 9 42 42 H 1.09001 * 109.58548 * 113.65679 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 -0.0006 6 6 4.0000 2.7422 0.0002 7 1 3.5382 3.2571 0.8425 8 6 3.5594 3.4049 -1.3065 9 6 5.4998 2.8225 0.1234 10 8 6.1859 2.9162 -0.8723 11 7 6.0787 2.7902 1.3401 12 6 5.2715 2.5687 2.5475 13 6 5.8738 1.3909 3.3287 14 6 7.3525 1.6724 3.6045 15 6 7.9391 0.5366 4.4028 16 1 8.7653 -0.0333 4.0041 17 6 7.4209 0.2252 5.6419 18 7 6.4151 0.9195 6.1275 19 14 8.1477 -1.1830 6.6310 20 1 9.5823 -0.9103 6.9002 21 1 7.4186 -1.3116 7.9184 22 1 8.0200 -2.4463 5.8610 23 6 8.1045 1.8051 2.2783 24 6 7.5282 2.9820 1.4847 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.9564 0.7807 0.8891 29 1 3.9556 0.7810 -0.8909 30 1 2.4857 3.2711 -1.4378 31 1 3.7911 4.4694 -1.2703 32 1 4.0875 2.9464 -2.1426 33 1 5.2852 3.4661 3.1660 34 1 4.2457 2.3340 2.2633 35 1 5.7807 0.4768 2.7423 36 1 5.3433 1.2733 4.2735 37 1 7.4464 2.5998 4.1696 38 1 6.0509 0.7006 6.9995 39 1 7.9904 0.8871 1.7019 40 1 9.1619 1.9821 2.4751 41 1 7.9919 3.0201 0.4990 42 1 7.7222 3.9138 2.0161 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541978083.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:28 Heat of formation + Delta-G solvation = -136.541138 kcal Electronic energy + Delta-G solvation = -23342.093765 eV Core-core repulsion = 19900.787025 eV Total energy + Delta-G solvation = -3441.306740 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.81598 -39.75963 -37.06310 -36.66819 -34.33257 -33.48353 -31.18538 -30.07150 -29.13232 -27.05756 -26.40702 -24.22351 -22.71208 -22.09102 -20.92551 -19.61775 -18.25806 -17.76784 -17.14874 -16.62472 -16.57220 -16.11131 -15.33610 -14.79457 -14.57531 -14.42236 -13.82226 -13.40739 -13.24095 -13.08919 -12.87264 -12.70194 -12.65711 -12.24427 -12.21573 -11.78228 -11.64143 -11.34570 -11.24741 -11.00298 -10.94123 -10.88770 -10.69642 -10.53130 -10.42655 -10.13650 -9.70939 -9.38997 -9.20409 -8.96251 -8.41192 -8.04512 -6.06258 -4.12583 2.08603 2.44085 3.00148 3.27905 3.32862 3.35850 3.44337 4.38394 4.47405 4.75003 4.79164 4.92888 4.97346 5.01440 5.22657 5.30140 5.36516 5.44406 5.49387 5.66020 5.76625 5.87660 5.92449 6.04284 6.08391 6.12369 6.19805 6.23099 6.35760 6.42084 6.62006 6.85713 6.99615 7.09231 7.22783 7.61620 7.62744 7.87196 7.87669 7.99895 8.36483 8.49915 8.90709 9.52873 10.99216 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.016281 B = 0.004888 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.400939 B = 5726.690392 C = 6997.012979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.468 3.532 4 O -0.504 6.504 5 C -0.109 4.109 6 C -0.098 4.098 7 H 0.102 0.898 8 C -0.139 4.139 9 C 0.516 3.484 10 O -0.553 6.553 11 N -0.598 5.598 12 C 0.098 3.902 13 C -0.123 4.123 14 C 0.048 3.952 15 C -0.513 4.513 16 H 0.054 0.946 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.278 1.278 23 C -0.123 4.123 24 C 0.111 3.889 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.040 0.960 36 H 0.105 0.895 37 H 0.028 0.972 38 H 0.261 0.739 39 H 0.052 0.948 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.678 0.926 -10.182 14.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.275 6.275 3 C 0.311 3.689 4 O -0.392 6.392 5 C -0.147 4.147 6 C -0.119 4.119 7 H 0.120 0.880 8 C -0.197 4.197 9 C 0.303 3.697 10 O -0.432 6.432 11 N -0.330 5.330 12 C -0.024 4.024 13 C -0.162 4.162 14 C 0.030 3.970 15 C -0.551 4.551 16 H 0.073 0.927 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.161 4.161 24 C -0.011 4.011 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.119 0.881 28 H 0.135 0.865 29 H 0.132 0.868 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.123 0.877 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.652 1.279 -10.518 14.333 hybrid contribution 0.102 -0.771 0.836 1.142 sum -9.550 0.509 -9.682 13.609 Atomic orbital electron populations 1.23268 0.76329 1.03695 1.02542 1.86530 1.23455 1.33433 1.84048 1.23641 0.91947 0.81310 0.72004 1.90640 1.67200 1.36108 1.45204 1.21386 0.87885 0.98205 1.07208 1.21124 0.93119 0.95295 1.02380 0.88010 1.21773 1.01979 1.00675 0.95268 1.20336 0.89643 0.76582 0.83101 1.90636 1.64845 1.51128 1.36552 1.48282 1.08929 1.69367 1.06420 1.22224 0.93674 1.00979 0.85487 1.22115 1.00441 0.93523 1.00103 1.18633 0.90702 0.97343 0.90328 1.21165 1.16564 1.15720 1.01654 0.92728 1.24948 0.94994 0.96449 0.97475 1.69817 1.24729 1.40151 1.18415 0.86681 0.79310 0.82821 0.79331 1.20305 1.21312 1.20313 1.22001 0.99578 0.96105 0.98396 1.21720 0.79391 0.99073 1.00964 0.91747 0.91967 0.88129 0.86517 0.86823 0.90810 0.92281 0.91698 0.91739 0.91492 0.94136 0.87698 0.95427 0.92891 0.92895 0.92136 0.90299 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.55 101.05 1.07 1.37 16 2 O -0.36 -4.19 10.57 -39.26 -0.41 -4.60 16 3 C 0.47 5.92 7.64 36.01 0.28 6.19 16 4 O -0.50 -7.20 13.74 -18.74 -0.26 -7.46 16 5 C -0.11 -1.35 4.97 -27.88 -0.14 -1.49 16 6 C -0.10 -1.35 1.50 -91.77 -0.14 -1.48 16 7 H 0.10 1.38 6.54 -51.93 -0.34 1.04 16 8 C -0.14 -1.82 8.61 37.16 0.32 -1.50 16 9 C 0.52 8.66 6.80 -10.98 -0.07 8.59 16 10 O -0.55 -10.72 15.41 5.55 0.09 -10.64 16 11 N -0.60 -10.36 2.97 -172.49 -0.51 -10.87 16 12 C 0.10 1.69 5.95 -3.49 -0.02 1.67 16 13 C -0.12 -2.60 5.17 -26.39 -0.14 -2.74 16 14 C 0.05 1.12 2.06 -91.73 -0.19 0.93 16 15 C -0.51 -13.35 8.56 -34.44 -0.29 -13.65 16 16 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 17 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 18 N -0.89 -23.98 11.31 55.43 0.63 -23.35 16 19 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 C -0.12 -2.44 5.30 -26.61 -0.14 -2.58 16 24 C 0.11 1.97 6.44 -3.70 -0.02 1.95 16 25 H 0.06 0.55 8.13 -51.92 -0.42 0.13 16 26 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 27 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 28 H 0.12 1.46 7.19 -51.93 -0.37 1.09 16 29 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.07 0.94 5.88 -51.93 -0.31 0.63 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.86 7.69 -51.93 -0.40 0.46 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.07 1.00 4.89 -51.93 -0.25 0.74 16 35 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.10 2.48 6.03 -51.93 -0.31 2.17 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.08 1.40 7.00 -51.93 -0.36 1.04 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 334.52 15.07 5.04 5.04 Total: -1.00 -29.55 334.52 -6.58 -36.13 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.54 Total: 1.46 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 0.41 Total: -1.20 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.12 Total: -34.22 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.59 Total: -22.70 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.55 -6.58 -36.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541978083.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.414 kcal (2) G-P(sol) polarization free energy of solvation -29.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds