Wall clock time and date at job start Tue Mar 31 2020 06:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34223 * 117.00390 * 2 1 4 4 O 1.20832 * 119.99761 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00251 * 180.27458 * 3 2 1 6 6 C 1.53003 * 109.47089 * 179.72308 * 5 3 2 7 7 H 1.09000 * 109.47149 * 304.99991 * 6 5 3 8 8 C 1.53001 * 109.47198 * 65.00091 * 6 5 3 9 9 C 1.50700 * 109.46887 * 185.00027 * 6 5 3 10 10 O 1.21274 * 120.00022 * 334.71053 * 9 6 5 11 11 N 1.34778 * 119.99456 * 154.70777 * 9 6 5 12 12 C 1.46918 * 120.63632 * 4.97564 * 11 9 6 13 13 C 1.53626 * 108.54901 * 126.36521 * 12 11 9 14 14 C 1.53039 * 109.23796 * 54.85472 * 13 12 11 15 15 C 1.50700 * 109.44697 * 178.49715 * 14 13 12 16 16 H 1.08004 * 119.99724 * 120.06532 * 15 14 13 17 17 C 1.37870 * 120.00300 * 300.06093 * 15 14 13 18 18 N 1.31515 * 120.00173 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00385 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46505 * 60.00462 * 19 17 15 21 21 H 1.48497 * 109.47184 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47034 * 300.00787 * 19 17 15 23 23 C 1.53042 * 109.54131 * 298.51267 * 14 13 12 24 24 C 1.46927 * 120.62596 * 185.25245 * 11 9 6 25 25 H 1.09002 * 109.47063 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46538 * 300.00176 * 1 2 3 27 27 H 1.08998 * 109.47190 * 59.99767 * 1 2 3 28 28 H 1.08997 * 109.47110 * 299.72184 * 5 3 2 29 29 H 1.09002 * 109.46795 * 59.72696 * 5 3 2 30 30 H 1.09003 * 109.47243 * 174.78106 * 8 6 5 31 31 H 1.09008 * 109.47069 * 294.78116 * 8 6 5 32 32 H 1.09000 * 109.46736 * 54.78030 * 8 6 5 33 33 H 1.09008 * 109.58791 * 246.20121 * 12 11 9 34 34 H 1.09000 * 109.58563 * 6.62500 * 12 11 9 35 35 H 1.08998 * 109.62954 * 294.86813 * 13 12 11 36 36 H 1.08997 * 109.43122 * 174.72430 * 13 12 11 37 37 H 1.09007 * 109.46305 * 58.53379 * 14 13 12 38 38 H 0.97003 * 120.00711 * 179.97438 * 18 17 15 39 39 H 1.08997 * 109.49615 * 301.41559 * 23 14 13 40 40 H 1.08994 * 109.49656 * 181.31721 * 23 14 13 41 41 H 1.09005 * 109.58858 * 353.37150 * 24 11 9 42 42 H 1.08997 * 109.58959 * 113.66086 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0063 6 6 4.0002 2.7420 -0.0119 7 1 3.5346 3.2553 -0.8532 8 6 3.5655 3.4074 1.2955 9 6 5.4995 2.8220 -0.1420 10 8 6.1904 1.8962 0.2273 11 7 6.0723 3.9224 -0.6687 12 6 5.2592 5.0945 -1.0199 13 6 5.8574 6.3292 -0.3286 14 6 7.3348 6.4531 -0.7078 15 6 7.9171 7.6837 -0.0615 16 1 8.7451 7.5922 0.6258 17 6 7.3930 8.9264 -0.3478 18 7 6.3844 9.0378 -1.1845 19 14 8.1143 10.4517 0.4537 20 1 9.5478 10.5735 0.0853 21 1 7.3782 11.6529 -0.0160 22 1 7.9901 10.3412 1.9293 23 6 8.0933 5.2154 -0.2232 24 6 7.5211 3.9702 -0.9082 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 3.9597 0.7830 0.8834 29 1 3.9525 0.7783 -0.8965 30 1 3.9543 4.4251 1.3320 31 1 2.4769 3.4322 1.3461 32 1 3.9556 2.8388 2.1397 33 1 5.2701 5.2363 -2.1007 34 1 4.2348 4.9439 -0.6794 35 1 5.7669 6.2233 0.7525 36 1 5.3222 7.2215 -0.6533 37 1 7.4262 6.5340 -1.7910 38 1 6.0154 9.9120 -1.3857 39 1 7.9817 5.1201 0.8569 40 1 9.1495 5.3151 -0.4729 41 1 7.9897 3.0775 -0.4939 42 1 7.7129 4.0197 -1.9800 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541978084.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:30 Heat of formation + Delta-G solvation = -137.006193 kcal Electronic energy + Delta-G solvation = -23066.181144 eV Core-core repulsion = 19624.854238 eV Total energy + Delta-G solvation = -3441.326906 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.82484 -39.77724 -37.08535 -36.66555 -34.31481 -33.47862 -31.22045 -30.08987 -29.09301 -27.09960 -26.35567 -24.17603 -22.68426 -22.20304 -20.94333 -19.56325 -18.29967 -17.78597 -17.18837 -16.68906 -16.41103 -15.94013 -15.42545 -14.91057 -14.55659 -14.36735 -13.84664 -13.50341 -13.21246 -13.03638 -12.98114 -12.70012 -12.50543 -12.22538 -12.21004 -11.92608 -11.65519 -11.33211 -11.20048 -11.07160 -10.97201 -10.92743 -10.67770 -10.53684 -10.40154 -10.10360 -9.67629 -9.34999 -9.18168 -8.92815 -8.38855 -8.02063 -6.03917 -4.10223 2.04747 2.46658 2.91971 3.29353 3.34236 3.37155 3.49150 4.40200 4.42199 4.73353 4.85284 4.86155 4.93072 4.95015 5.24631 5.26800 5.32463 5.54495 5.56421 5.62976 5.77699 5.86483 5.92775 6.03069 6.07202 6.13469 6.17111 6.28361 6.36316 6.44024 6.64821 6.87796 7.02217 7.13455 7.26745 7.57950 7.65223 7.89479 7.90843 8.02832 8.39089 8.49906 8.92905 9.54982 11.01492 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.028974 B = 0.003679 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.155664 B = 7608.214499 C = 8222.086704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.463 3.537 4 O -0.502 6.502 5 C -0.095 4.095 6 C -0.099 4.099 7 H 0.102 0.898 8 C -0.151 4.151 9 C 0.518 3.482 10 O -0.560 6.560 11 N -0.596 5.596 12 C 0.097 3.903 13 C -0.122 4.122 14 C 0.049 3.951 15 C -0.513 4.513 16 H 0.054 0.946 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.278 1.278 23 C -0.123 4.123 24 C 0.111 3.889 25 H 0.100 0.900 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.039 0.961 36 H 0.105 0.895 37 H 0.027 0.973 38 H 0.261 0.739 39 H 0.052 0.948 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.686 -14.740 0.549 17.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.306 3.694 4 O -0.390 6.390 5 C -0.133 4.133 6 C -0.120 4.120 7 H 0.120 0.880 8 C -0.208 4.208 9 C 0.305 3.695 10 O -0.439 6.439 11 N -0.328 5.328 12 C -0.025 4.025 13 C -0.161 4.161 14 C 0.030 3.970 15 C -0.551 4.551 16 H 0.072 0.928 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.161 4.161 24 C -0.011 4.011 25 H 0.118 0.882 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.134 0.866 29 H 0.127 0.873 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.123 0.877 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.662 -14.762 0.646 17.655 hybrid contribution 0.097 1.085 0.356 1.146 sum -9.565 -13.678 1.001 16.720 Atomic orbital electron populations 1.23258 0.76413 1.03582 1.02617 1.86517 1.23394 1.33638 1.84220 1.23823 0.92188 0.81256 0.72126 1.90659 1.67260 1.36058 1.44983 1.21202 0.86770 0.98256 1.07084 1.21084 0.93285 0.95261 1.02395 0.87966 1.21922 1.03138 1.01297 0.94461 1.20307 0.89652 0.82224 0.77268 1.90636 1.64793 1.38303 1.50210 1.48221 1.08919 1.14688 1.60942 1.22248 0.93943 0.86136 1.00126 1.22093 1.00332 0.95674 0.97987 1.18634 0.90769 0.91024 0.96552 1.21164 1.16415 0.91063 1.26460 0.92770 1.24953 0.95011 0.98907 0.95049 1.69820 1.24441 1.23969 1.34829 0.86677 0.79250 0.82425 0.79765 1.20318 1.21309 1.20340 1.22001 0.99567 0.94936 0.99605 1.21715 0.79449 1.00110 0.99841 0.88206 0.91868 0.91858 0.86557 0.87302 0.91127 0.90111 0.92315 0.91886 0.90947 0.94174 0.87740 0.95470 0.92901 0.92937 0.92168 0.90320 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.78 10.56 -39.24 -0.41 -4.20 16 3 C 0.46 5.47 7.70 36.00 0.28 5.74 16 4 O -0.50 -6.99 13.72 -18.75 -0.26 -7.25 16 5 C -0.10 -1.10 4.73 -27.88 -0.13 -1.23 16 6 C -0.10 -1.34 1.50 -91.77 -0.14 -1.48 16 7 H 0.10 1.36 6.54 -51.93 -0.34 1.02 16 8 C -0.15 -2.03 8.55 37.16 0.32 -1.71 16 9 C 0.52 8.65 6.80 -10.98 -0.07 8.58 16 10 O -0.56 -10.60 15.62 5.56 0.09 -10.51 16 11 N -0.60 -10.48 2.97 -172.50 -0.51 -10.99 16 12 C 0.10 1.72 5.95 -3.49 -0.02 1.70 16 13 C -0.12 -2.66 5.17 -26.39 -0.14 -2.80 16 14 C 0.05 1.14 2.06 -91.73 -0.19 0.96 16 15 C -0.51 -13.58 8.56 -34.44 -0.29 -13.87 16 16 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 17 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 18 N -0.89 -24.31 11.30 55.43 0.63 -23.68 16 19 Si 0.89 20.81 29.54 -169.99 -5.02 15.78 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 23 C -0.12 -2.49 5.30 -26.61 -0.14 -2.64 16 24 C 0.11 1.99 6.44 -3.71 -0.02 1.97 16 25 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 27 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 28 H 0.12 1.30 8.03 -51.93 -0.42 0.88 16 29 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.02 7.20 -51.93 -0.37 0.65 16 31 H 0.08 1.07 6.07 -51.92 -0.32 0.75 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 34 H 0.07 1.13 4.89 -51.93 -0.25 0.88 16 35 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.10 2.54 6.03 -51.93 -0.31 2.23 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.08 1.40 7.00 -51.93 -0.36 1.04 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 335.02 15.07 5.05 5.05 Total: -1.00 -29.83 335.02 -6.59 -36.42 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.57 Total: 1.27 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 0.42 Total: -1.90 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.11 Total: -34.67 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.59 Total: -21.95 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.83 -6.59 -36.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541978084.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.582 kcal (2) G-P(sol) polarization free energy of solvation -29.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds