Wall clock time and date at job start Tue Mar 31 2020 06:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 116.99722 * 2 1 4 4 O 1.20828 * 119.99831 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99647 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.46915 * 299.99516 * 5 3 2 7 7 C 1.53000 * 109.47535 * 59.99689 * 5 3 2 8 8 C 1.53004 * 109.47117 * 179.97438 * 5 3 2 9 9 C 1.50700 * 109.47208 * 174.99635 * 8 5 3 10 10 O 1.21283 * 119.99803 * 359.97438 * 9 8 5 11 11 N 1.34777 * 119.99675 * 180.27843 * 9 8 5 12 12 C 1.46921 * 120.63392 * 359.43977 * 11 9 8 13 13 C 1.52760 * 109.00994 * 233.58899 * 12 11 9 14 14 C 1.53036 * 109.38235 * 305.58739 * 13 12 11 15 15 C 1.50697 * 109.44662 * 181.25744 * 14 13 12 16 16 H 1.08003 * 119.99929 * 239.93441 * 15 14 13 17 17 C 1.37879 * 120.00491 * 59.94144 * 15 14 13 18 18 N 1.31510 * 119.99565 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00004 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47538 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47438 * 119.99958 * 19 17 15 22 22 H 1.48507 * 109.46948 * 239.99490 * 19 17 15 23 23 C 1.53035 * 109.53955 * 61.24292 * 14 13 12 24 24 C 1.46924 * 120.62813 * 179.72946 * 11 9 8 25 25 H 1.09007 * 109.46980 * 60.00579 * 1 2 3 26 26 H 1.09007 * 109.47231 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47635 * 300.00482 * 1 2 3 28 28 H 1.09003 * 109.47289 * 180.02562 * 7 5 3 29 29 H 1.09004 * 109.46667 * 299.99719 * 7 5 3 30 30 H 1.09000 * 109.47161 * 59.99977 * 7 5 3 31 31 H 1.09009 * 109.46730 * 54.99541 * 8 5 3 32 32 H 1.08998 * 109.46846 * 295.00086 * 8 5 3 33 33 H 1.09004 * 109.58490 * 353.42409 * 12 11 9 34 34 H 1.09002 * 109.58518 * 113.84767 * 12 11 9 35 35 H 1.09005 * 109.56000 * 185.55371 * 13 12 11 36 36 H 1.08994 * 109.38732 * 65.51586 * 13 12 11 37 37 H 1.09002 * 109.46377 * 301.22063 * 14 13 12 38 38 H 0.97002 * 119.99797 * 180.02562 * 18 17 15 39 39 H 1.08994 * 109.50277 * 178.68099 * 23 14 13 40 40 H 1.08998 * 109.52797 * 58.59747 * 23 14 13 41 41 H 1.09006 * 109.58353 * 246.15683 * 24 11 9 42 42 H 1.09004 * 109.59032 * 6.43097 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9563 0.7807 0.8892 7 6 4.1129 0.5815 -1.2501 8 6 4.0001 2.7421 -0.0011 9 6 5.4999 2.8226 0.1222 10 8 6.1570 1.8064 0.2031 11 7 6.1103 4.0239 0.1488 12 6 5.3283 5.2634 0.0462 13 6 5.8915 6.1145 -1.0905 14 6 7.3897 6.3327 -0.8673 15 6 7.9406 7.1979 -1.9713 16 1 8.7256 6.8223 -2.6110 17 6 7.4427 8.4689 -2.1649 18 7 6.4866 8.9262 -1.3863 19 14 8.1252 9.5409 -3.5340 20 1 9.1857 8.7988 -4.2619 21 1 7.0334 9.8959 -4.4759 22 1 8.6996 10.7807 -2.9522 23 6 8.1097 4.9823 -0.8702 24 6 7.5711 4.1186 0.2746 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 5.2014 0.6382 -1.2503 29 1 3.8038 -0.4638 -1.2501 30 1 3.7229 1.0757 -2.1399 31 1 3.5380 3.2579 0.8408 32 1 3.6862 3.2134 -0.9325 33 1 4.2860 5.0217 -0.1619 34 1 5.3971 5.8174 0.9825 35 1 5.3826 7.0782 -1.1116 36 1 5.7361 5.6001 -2.0388 37 1 7.5459 6.8255 0.0924 38 1 6.1360 9.8203 -1.5227 39 1 9.1796 5.1401 -0.7346 40 1 7.9340 4.4778 -1.8202 41 1 7.8266 4.5772 1.2299 42 1 8.0081 3.1215 0.2197 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542907751.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:54 Heat of formation + Delta-G solvation = -138.669618 kcal Electronic energy + Delta-G solvation = -22934.076050 eV Core-core repulsion = 19492.677012 eV Total energy + Delta-G solvation = -3441.399038 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.82038 -39.71563 -37.12782 -36.63572 -34.38233 -33.54663 -31.40077 -30.16782 -28.45117 -27.64470 -26.02587 -24.30861 -22.87372 -22.26308 -20.69206 -19.57969 -18.38259 -17.77454 -17.14433 -16.66404 -16.37673 -15.83303 -15.42749 -15.19432 -14.55693 -14.23646 -13.87669 -13.43568 -13.12693 -13.08633 -12.90768 -12.81591 -12.54882 -12.41569 -12.22800 -11.84658 -11.67242 -11.31295 -11.24231 -11.13646 -10.99052 -10.96682 -10.62267 -10.43923 -10.39234 -10.12229 -9.68838 -9.39486 -9.18713 -8.93744 -8.40062 -8.03123 -6.04912 -4.10989 2.06256 2.48131 2.91719 3.26262 3.34997 3.38832 3.49176 4.39687 4.41373 4.71893 4.81624 4.87232 4.95156 4.96316 5.21606 5.24999 5.30398 5.55588 5.61662 5.63549 5.78927 5.84478 5.92335 5.96055 6.07905 6.12885 6.16601 6.29377 6.31413 6.43652 6.63887 6.86609 7.01328 7.12128 7.25652 7.58090 7.64826 7.88705 7.89912 8.02193 8.38327 8.49570 8.92706 9.54381 11.00648 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.026037 B = 0.003629 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.139029 B = 7713.760162 C = 8290.839030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.465 3.535 4 O -0.506 6.506 5 C -0.064 4.064 6 H 0.117 0.883 7 C -0.149 4.149 8 C -0.128 4.128 9 C 0.515 3.485 10 O -0.558 6.558 11 N -0.597 5.597 12 C 0.100 3.900 13 C -0.125 4.125 14 C 0.048 3.952 15 C -0.511 4.511 16 H 0.055 0.945 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.123 4.123 24 C 0.111 3.889 25 H 0.062 0.938 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.094 0.906 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.039 0.961 37 H 0.027 0.973 38 H 0.260 0.740 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.117 -14.629 3.684 17.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.308 3.692 4 O -0.394 6.394 5 C -0.083 4.083 6 H 0.134 0.866 7 C -0.207 4.207 8 C -0.168 4.168 9 C 0.303 3.697 10 O -0.439 6.439 11 N -0.329 5.329 12 C -0.022 4.022 13 C -0.164 4.164 14 C 0.030 3.970 15 C -0.549 4.549 16 H 0.073 0.927 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.161 4.161 24 C -0.011 4.011 25 H 0.081 0.919 26 H 0.118 0.882 27 H 0.081 0.919 28 H 0.113 0.887 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.123 0.877 36 H 0.058 0.942 37 H 0.046 0.954 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.108 -14.676 3.752 17.675 hybrid contribution -0.064 0.948 -0.745 1.208 sum -9.172 -13.728 3.007 16.781 Atomic orbital electron populations 1.23266 0.76526 1.03586 1.02588 1.86515 1.23251 1.33523 1.84099 1.23929 0.92129 0.81249 0.71865 1.90680 1.67258 1.36282 1.45142 1.20732 0.86057 0.97786 1.03765 0.86551 1.21915 1.04297 1.00060 0.94380 1.21559 0.93632 0.95645 1.05923 1.20286 0.89644 0.83311 0.76474 1.90608 1.66984 1.34336 1.51929 1.48238 1.08180 1.06007 1.70446 1.22014 0.94275 0.84563 1.01312 1.21951 1.00430 0.99876 0.94096 1.18639 0.90782 0.90109 0.97512 1.21238 1.19744 0.98552 1.15413 0.92659 1.24964 0.95037 0.97811 0.96201 1.69842 1.27171 1.17535 1.38491 0.86561 0.78971 0.80464 0.82154 1.19840 1.21054 1.21062 1.22002 0.99727 0.98003 0.96394 1.21709 0.79021 1.00969 0.99364 0.91875 0.88166 0.91921 0.88714 0.91585 0.92633 0.88094 0.87941 0.91191 0.91799 0.87668 0.94243 0.95448 0.93016 0.92140 0.92955 0.92207 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.90 10.47 -39.26 -0.41 -4.31 16 3 C 0.47 5.81 7.26 36.00 0.26 6.07 16 4 O -0.51 -7.50 15.67 -18.75 -0.29 -7.80 16 5 C -0.06 -0.78 2.48 -91.77 -0.23 -1.00 16 6 H 0.12 1.35 7.95 -51.93 -0.41 0.94 16 7 C -0.15 -1.74 8.86 37.16 0.33 -1.41 16 8 C -0.13 -1.72 2.87 -27.88 -0.08 -1.80 16 9 C 0.51 8.37 7.41 -10.98 -0.08 8.29 16 10 O -0.56 -10.03 13.38 5.55 0.07 -9.95 16 11 N -0.60 -10.36 2.98 -173.03 -0.52 -10.87 16 12 C 0.10 1.76 6.31 -3.94 -0.02 1.74 16 13 C -0.13 -2.71 5.14 -26.84 -0.14 -2.85 16 14 C 0.05 1.12 2.07 -91.74 -0.19 0.94 16 15 C -0.51 -13.49 8.56 -34.44 -0.29 -13.78 16 16 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 18 N -0.89 -24.28 11.30 55.43 0.63 -23.66 16 19 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C -0.12 -2.47 5.30 -26.61 -0.14 -2.61 16 24 C 0.11 1.98 6.43 -3.71 -0.02 1.95 16 25 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 26 H 0.10 0.50 8.14 -51.92 -0.42 0.08 16 27 H 0.06 0.49 8.13 -51.93 -0.42 0.06 16 28 H 0.09 1.28 5.95 -51.93 -0.31 0.98 16 29 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.10 1.29 7.77 -51.92 -0.40 0.89 16 32 H 0.10 1.39 7.68 -51.93 -0.40 0.99 16 33 H 0.07 1.08 5.94 -51.93 -0.31 0.77 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.11 2.56 6.03 -51.93 -0.31 2.25 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.08 1.38 7.00 -51.93 -0.36 1.02 16 LS Contribution 337.10 15.07 5.08 5.08 Total: -1.00 -29.54 337.10 -6.80 -36.34 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -6.70 Total: 1.04 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 0.36 Total: -1.61 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.11 Total: -34.53 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.63 Total: -22.05 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.54 -6.80 -36.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542907751.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.330 kcal (2) G-P(sol) polarization free energy of solvation -29.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds