Wall clock time and date at job start Tue Mar 31 2020 06:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 116.99722 * 2 1 4 4 O 1.20828 * 119.99831 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99647 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.46915 * 299.99516 * 5 3 2 7 7 C 1.53000 * 109.47535 * 59.99689 * 5 3 2 8 8 C 1.53004 * 109.47117 * 179.97438 * 5 3 2 9 9 C 1.50700 * 109.47208 * 174.99635 * 8 5 3 10 10 O 1.21283 * 119.99803 * 359.97438 * 9 8 5 11 11 N 1.34777 * 119.99675 * 180.27843 * 9 8 5 12 12 C 1.46921 * 120.63392 * 359.43977 * 11 9 8 13 13 C 1.52760 * 109.00994 * 233.58899 * 12 11 9 14 14 C 1.53036 * 109.38235 * 305.58739 * 13 12 11 15 15 C 1.50697 * 109.44662 * 181.25744 * 14 13 12 16 16 H 1.08003 * 119.99929 * 239.93441 * 15 14 13 17 17 C 1.37879 * 120.00491 * 59.94144 * 15 14 13 18 18 N 1.31510 * 119.99565 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00004 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47538 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47438 * 119.99958 * 19 17 15 22 22 H 1.48507 * 109.46948 * 239.99490 * 19 17 15 23 23 C 1.53035 * 109.53955 * 61.24292 * 14 13 12 24 24 C 1.46924 * 120.62813 * 179.72946 * 11 9 8 25 25 H 1.09007 * 109.46980 * 60.00579 * 1 2 3 26 26 H 1.09007 * 109.47231 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47635 * 300.00482 * 1 2 3 28 28 H 1.09003 * 109.47289 * 180.02562 * 7 5 3 29 29 H 1.09004 * 109.46667 * 299.99719 * 7 5 3 30 30 H 1.09000 * 109.47161 * 59.99977 * 7 5 3 31 31 H 1.09009 * 109.46730 * 54.99541 * 8 5 3 32 32 H 1.08998 * 109.46846 * 295.00086 * 8 5 3 33 33 H 1.09004 * 109.58490 * 353.42409 * 12 11 9 34 34 H 1.09002 * 109.58518 * 113.84767 * 12 11 9 35 35 H 1.09005 * 109.56000 * 185.55371 * 13 12 11 36 36 H 1.08994 * 109.38732 * 65.51586 * 13 12 11 37 37 H 1.09002 * 109.46377 * 301.22063 * 14 13 12 38 38 H 0.97002 * 119.99797 * 180.02562 * 18 17 15 39 39 H 1.08994 * 109.50277 * 178.68099 * 23 14 13 40 40 H 1.08998 * 109.52797 * 58.59747 * 23 14 13 41 41 H 1.09006 * 109.58353 * 246.15683 * 24 11 9 42 42 H 1.09004 * 109.59032 * 6.43097 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9563 0.7807 0.8892 7 6 4.1129 0.5815 -1.2501 8 6 4.0001 2.7421 -0.0011 9 6 5.4999 2.8226 0.1222 10 8 6.1570 1.8064 0.2031 11 7 6.1103 4.0239 0.1488 12 6 5.3283 5.2634 0.0462 13 6 5.8915 6.1145 -1.0905 14 6 7.3897 6.3327 -0.8673 15 6 7.9406 7.1979 -1.9713 16 1 8.7256 6.8223 -2.6110 17 6 7.4427 8.4689 -2.1649 18 7 6.4866 8.9262 -1.3863 19 14 8.1252 9.5409 -3.5340 20 1 9.1857 8.7988 -4.2619 21 1 7.0334 9.8959 -4.4759 22 1 8.6996 10.7807 -2.9522 23 6 8.1097 4.9823 -0.8702 24 6 7.5711 4.1186 0.2746 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 5.2014 0.6382 -1.2503 29 1 3.8038 -0.4638 -1.2501 30 1 3.7229 1.0757 -2.1399 31 1 3.5380 3.2579 0.8408 32 1 3.6862 3.2134 -0.9325 33 1 4.2860 5.0217 -0.1619 34 1 5.3971 5.8174 0.9825 35 1 5.3826 7.0782 -1.1116 36 1 5.7361 5.6001 -2.0388 37 1 7.5459 6.8255 0.0924 38 1 6.1360 9.8203 -1.5227 39 1 9.1796 5.1401 -0.7346 40 1 7.9340 4.4778 -1.8202 41 1 7.8266 4.5772 1.2299 42 1 8.0081 3.1215 0.2197 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542907751.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:53 Heat of formation + Delta-G solvation = -154.622713 kcal Electronic energy + Delta-G solvation = -22934.767828 eV Core-core repulsion = 19492.677012 eV Total energy + Delta-G solvation = -3442.090816 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.82843 -41.00434 -38.58451 -37.62260 -35.48516 -35.29595 -33.12293 -31.77073 -29.51214 -28.52648 -27.70623 -25.40344 -24.46954 -23.79522 -21.89868 -20.96742 -19.71173 -18.98322 -18.41578 -18.05462 -17.57926 -17.00339 -16.65566 -16.55846 -16.39648 -15.34193 -14.99682 -14.89094 -14.59332 -14.44136 -14.26720 -14.08479 -13.78076 -13.71383 -13.26756 -13.17639 -13.03619 -12.85901 -12.74560 -12.41748 -12.26070 -12.15505 -12.11485 -11.90646 -11.78748 -11.46133 -11.43517 -10.98743 -10.91583 -10.63923 -10.38794 -9.52206 -8.07563 -6.20505 1.10920 1.40221 1.43750 1.53474 1.57356 1.63892 2.20162 2.44413 3.19201 3.40170 3.61979 3.84260 3.94508 4.12948 4.28641 4.29694 4.34034 4.34840 4.40579 4.49000 4.58692 4.60724 4.63637 4.72606 4.75790 4.89515 4.92162 4.99358 5.00463 5.20857 5.26279 5.28466 5.36977 5.45793 5.56300 5.66389 6.00008 6.14777 6.40118 6.51166 6.66773 6.89586 7.16669 7.47339 8.95920 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.026037 B = 0.003629 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.139029 B = 7713.760162 C = 8290.839030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.359 6.359 3 C 0.472 3.528 4 O -0.533 6.533 5 C -0.061 4.061 6 H 0.124 0.876 7 C -0.144 4.144 8 C -0.123 4.123 9 C 0.517 3.483 10 O -0.572 6.572 11 N -0.603 5.603 12 C 0.113 3.887 13 C -0.117 4.117 14 C 0.045 3.955 15 C -0.533 4.533 16 H 0.047 0.953 17 C 0.017 3.983 18 N -0.912 5.912 19 Si 0.948 3.052 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.281 1.281 23 C -0.113 4.113 24 C 0.118 3.882 25 H 0.061 0.939 26 H 0.132 0.868 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.028 0.972 37 H 0.003 0.997 38 H 0.261 0.739 39 H 0.063 0.937 40 H 0.042 0.958 41 H 0.069 0.931 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.951 -15.865 3.770 19.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.316 3.684 4 O -0.423 6.423 5 C -0.081 4.081 6 H 0.142 0.858 7 C -0.201 4.201 8 C -0.163 4.163 9 C 0.307 3.693 10 O -0.454 6.454 11 N -0.335 5.335 12 C -0.010 4.010 13 C -0.155 4.155 14 C 0.026 3.974 15 C -0.571 4.571 16 H 0.065 0.935 17 C -0.182 4.182 18 N -0.551 5.551 19 Si 0.775 3.225 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.152 4.152 24 C -0.005 4.005 25 H 0.080 0.920 26 H 0.150 0.850 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.130 0.870 32 H 0.122 0.878 33 H 0.114 0.886 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.047 0.953 37 H 0.021 0.979 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.061 0.939 41 H 0.087 0.913 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.945 -15.941 3.840 19.177 hybrid contribution 0.181 1.280 -0.776 1.508 sum -9.763 -14.661 3.064 17.879 Atomic orbital electron populations 1.23577 0.74725 1.05768 1.02578 1.86500 1.24989 1.32473 1.83539 1.23853 0.92050 0.81324 0.71131 1.90674 1.67809 1.37189 1.46588 1.20692 0.86183 0.96887 1.04300 0.85838 1.21848 1.02927 1.01121 0.94244 1.21538 0.91342 0.96976 1.06397 1.20694 0.90699 0.82489 0.75452 1.90607 1.67697 1.34680 1.52372 1.48257 1.07942 1.06317 1.70974 1.21829 0.95313 0.84164 0.99646 1.21718 0.99186 0.99276 0.95344 1.18612 0.92300 0.91207 0.95255 1.21578 1.19809 0.99493 1.16201 0.93474 1.25636 0.95393 0.98989 0.98202 1.69954 1.27845 1.17778 1.39564 0.85658 0.78363 0.78816 0.79702 1.19631 1.20693 1.20736 1.21845 0.99722 0.96540 0.97054 1.21595 0.79543 1.00713 0.98627 0.92010 0.84956 0.91867 0.90552 0.89979 0.92475 0.87040 0.87790 0.88590 0.91447 0.90346 0.95283 0.97855 0.92976 0.91828 0.93886 0.91268 0.89605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.55 16 2 O -0.36 -7.00 10.47 -51.43 -0.54 -7.54 16 3 C 0.47 10.88 7.26 71.23 0.52 11.40 16 4 O -0.53 -14.93 15.67 21.96 0.34 -14.59 16 5 C -0.06 -1.37 2.48 -11.54 -0.03 -1.39 16 6 H 0.12 2.61 7.95 -2.39 -0.02 2.59 16 7 C -0.14 -3.11 8.86 71.98 0.64 -2.48 16 8 C -0.12 -3.08 2.87 29.85 0.09 -2.99 16 9 C 0.52 15.97 7.41 87.66 0.65 16.62 16 10 O -0.57 -19.67 13.38 -3.04 -0.04 -19.71 16 11 N -0.60 -20.15 2.98 -819.73 -2.44 -22.59 16 12 C 0.11 3.85 6.31 86.22 0.54 4.39 16 13 C -0.12 -5.10 5.14 30.53 0.16 -4.95 16 14 C 0.04 2.13 2.07 -11.52 -0.02 2.10 16 15 C -0.53 -28.55 8.56 25.60 0.22 -28.33 16 16 H 0.05 2.53 7.74 -2.91 -0.02 2.51 16 17 C 0.02 0.90 5.30 84.66 0.45 1.34 16 18 N -0.91 -50.30 11.30 21.45 0.24 -50.06 16 19 Si 0.95 42.79 29.54 68.60 2.03 44.82 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 C -0.11 -4.55 5.30 30.67 0.16 -4.39 16 24 C 0.12 4.06 6.43 86.36 0.56 4.61 16 25 H 0.06 0.86 8.13 -2.38 -0.02 0.84 16 26 H 0.13 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 28 H 0.08 1.97 5.95 -2.39 -0.01 1.96 16 29 H 0.08 1.49 8.11 -2.38 -0.02 1.47 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.11 2.59 7.77 -2.38 -0.02 2.58 16 32 H 0.10 2.62 7.68 -2.39 -0.02 2.60 16 33 H 0.10 2.78 5.94 -2.38 -0.01 2.77 16 34 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.08 3.89 6.03 -2.38 -0.01 3.87 16 36 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 39 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.07 2.26 8.14 -2.38 -0.02 2.25 16 42 H 0.09 2.88 7.00 -2.38 -0.02 2.86 16 Total: -1.00 -62.75 337.10 5.71 -57.04 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 1.00 Total: 15.13 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 5.12 Total: -2.50 kcal Atomic # 7 Polarization: -70.45 SS G_CDS: -2.20 Total: -72.65 kcal Atomic # 8 Polarization: -41.61 SS G_CDS: -0.23 Total: -41.85 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -62.75 5.71 -57.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542907751.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.582 kcal (2) G-P(sol) polarization free energy of solvation -62.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds