Wall clock time and date at job start Tue Mar 31 2020 06:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34225 * 116.99811 * 2 1 4 4 O 1.20826 * 120.00453 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99695 * 180.02562 * 3 2 1 6 6 H 1.08993 * 109.47179 * 60.00115 * 5 3 2 7 7 C 1.53000 * 109.47024 * 299.99969 * 5 3 2 8 8 C 1.53006 * 109.47162 * 180.02562 * 5 3 2 9 9 C 1.50698 * 109.47060 * 184.99979 * 8 5 3 10 10 O 1.21280 * 119.99862 * 359.97438 * 9 8 5 11 11 N 1.34780 * 119.99663 * 179.97438 * 9 8 5 12 12 C 1.46920 * 120.63189 * 359.72020 * 11 9 8 13 13 C 1.52764 * 109.00863 * 233.58531 * 12 11 9 14 14 C 1.53039 * 109.38280 * 305.58711 * 13 12 11 15 15 C 1.50695 * 109.45041 * 181.25389 * 14 13 12 16 16 H 1.08001 * 120.00192 * 245.39030 * 15 14 13 17 17 C 1.37881 * 120.00154 * 65.38994 * 15 14 13 18 18 N 1.31518 * 119.99809 * 9.57473 * 17 15 14 19 19 Si 1.86804 * 120.00177 * 189.57933 * 17 15 14 20 20 H 1.48501 * 109.46740 * 94.99173 * 19 17 15 21 21 H 1.48496 * 109.47011 * 214.99038 * 19 17 15 22 22 H 1.48500 * 109.46952 * 334.98905 * 19 17 15 23 23 C 1.53044 * 109.53700 * 61.24062 * 14 13 12 24 24 C 1.46924 * 120.62738 * 180.02562 * 11 9 8 25 25 H 1.08998 * 109.47197 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47434 * 299.99671 * 1 2 3 27 27 H 1.09007 * 109.47344 * 59.99750 * 1 2 3 28 28 H 1.09001 * 109.47140 * 60.00462 * 7 5 3 29 29 H 1.09000 * 109.47106 * 179.97438 * 7 5 3 30 30 H 1.08993 * 109.47261 * 300.00096 * 7 5 3 31 31 H 1.09004 * 109.46474 * 305.00153 * 8 5 3 32 32 H 1.08997 * 109.46829 * 64.99340 * 8 5 3 33 33 H 1.09007 * 109.58685 * 353.41836 * 12 11 9 34 34 H 1.08997 * 109.58867 * 113.84267 * 12 11 9 35 35 H 1.08997 * 109.56573 * 185.55118 * 13 12 11 36 36 H 1.08997 * 109.38890 * 65.51439 * 13 12 11 37 37 H 1.08999 * 109.45948 * 301.22273 * 14 13 12 38 38 H 0.96994 * 119.99807 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.49868 * 178.68190 * 23 14 13 40 40 H 1.08999 * 109.52088 * 58.60052 * 23 14 13 41 41 H 1.08994 * 109.58595 * 246.15566 * 24 11 9 42 42 H 1.09002 * 109.58687 * 6.43822 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9557 0.7809 -0.8908 7 6 4.1138 0.5810 1.2483 8 6 4.0002 2.7421 0.0002 9 6 5.4998 2.8225 -0.1242 10 8 6.1570 1.8064 -0.2050 11 7 6.1108 4.0237 -0.1457 12 6 5.3277 5.2635 -0.0549 13 6 5.6922 6.1694 -1.2297 14 6 7.2074 6.3830 -1.2553 15 6 7.5655 7.3013 -2.3952 16 1 8.1561 6.9324 -3.2208 17 6 7.1391 8.6125 -2.3843 18 7 6.5855 9.1149 -1.3023 19 14 7.3477 9.6752 -3.9064 20 1 6.0964 9.6461 -4.7056 21 1 7.6419 11.0723 -3.4981 22 1 8.4705 9.1519 -4.7254 23 6 7.9109 5.0371 -1.4445 24 6 7.5719 4.1183 -0.2670 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5137 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 3.8048 -0.4643 1.2482 29 1 5.2023 0.6376 1.2477 30 1 3.7245 1.0749 2.1385 31 1 3.5375 3.2581 -0.8411 32 1 3.6870 3.2130 0.9319 33 1 4.2642 5.0276 -0.0934 34 1 5.5574 5.7731 0.8809 35 1 5.1911 7.1309 -1.1184 36 1 5.3752 5.6996 -2.1608 37 1 7.5270 6.8306 -0.3142 38 1 6.2859 10.0374 -1.2946 39 1 8.9889 5.1927 -1.4861 40 1 7.5735 4.5772 -2.3734 41 1 7.9888 4.5323 0.6510 42 1 7.9889 3.1266 -0.4430 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542907757.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:57 Heat of formation + Delta-G solvation = -139.806583 kcal Electronic energy + Delta-G solvation = -22888.970478 eV Core-core repulsion = 19447.522138 eV Total energy + Delta-G solvation = -3441.448340 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.83420 -39.73834 -37.14739 -36.64862 -34.40374 -33.52600 -31.40332 -30.26465 -28.46436 -27.66460 -26.02840 -24.31996 -22.87506 -22.31177 -20.70504 -19.64194 -18.34679 -17.81818 -17.15563 -16.67541 -16.37378 -15.83402 -15.50407 -15.24927 -14.54367 -14.21126 -13.79984 -13.43197 -13.23523 -13.12959 -12.98777 -12.73973 -12.61874 -12.44653 -12.24841 -11.80937 -11.68669 -11.40407 -11.27106 -11.17030 -10.99669 -10.93604 -10.66687 -10.46045 -10.41014 -10.20815 -9.69396 -9.44992 -9.10961 -8.99323 -8.37088 -8.06646 -6.07440 -4.08930 2.05310 2.46984 2.89306 3.27682 3.35593 3.38583 3.46698 4.39433 4.40768 4.69034 4.79562 4.86629 4.93765 4.94993 5.19462 5.24165 5.29644 5.52786 5.54446 5.62971 5.77447 5.82386 5.90258 5.92295 6.03703 6.12432 6.14744 6.23275 6.26705 6.42236 6.59921 6.84814 6.99722 7.07067 7.16669 7.57049 7.62446 7.85728 7.86990 7.93994 8.37958 8.47126 8.94727 9.55055 11.01283 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.025200 B = 0.003641 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.846423 B = 7688.625375 C = 8392.989372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.465 3.535 4 O -0.506 6.506 5 C -0.065 4.065 6 H 0.118 0.882 7 C -0.149 4.149 8 C -0.128 4.128 9 C 0.515 3.485 10 O -0.557 6.557 11 N -0.597 5.597 12 C 0.101 3.899 13 C -0.119 4.119 14 C 0.047 3.953 15 C -0.515 4.515 16 H 0.055 0.945 17 C 0.064 3.936 18 N -0.889 5.889 19 Si 0.887 3.113 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.123 4.123 24 C 0.111 3.889 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.042 0.958 37 H 0.035 0.965 38 H 0.260 0.740 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.061 0.939 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.984 -15.229 5.053 18.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.308 3.692 4 O -0.394 6.394 5 C -0.084 4.084 6 H 0.135 0.865 7 C -0.206 4.206 8 C -0.168 4.168 9 C 0.303 3.697 10 O -0.437 6.437 11 N -0.329 5.329 12 C -0.021 4.021 13 C -0.158 4.158 14 C 0.028 3.972 15 C -0.553 4.553 16 H 0.073 0.927 17 C -0.138 4.138 18 N -0.527 5.527 19 Si 0.715 3.285 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.161 4.161 24 C -0.011 4.011 25 H 0.118 0.882 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.112 0.888 30 H 0.072 0.928 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.943 -15.268 5.092 18.412 hybrid contribution -0.345 0.979 -0.903 1.376 sum -9.288 -14.289 4.189 17.549 Atomic orbital electron populations 1.23265 0.76506 1.03596 1.02596 1.86513 1.23265 1.33511 1.84092 1.23917 0.92118 0.81258 0.71878 1.90681 1.67265 1.36273 1.45134 1.20737 0.86099 0.97785 1.03799 0.86459 1.21907 1.04222 1.00112 0.94320 1.21558 0.93666 0.95678 1.05863 1.20282 0.89619 0.83304 0.76479 1.90610 1.66978 1.34318 1.51828 1.48206 1.08197 1.05889 1.70570 1.21975 0.94299 0.84634 1.01233 1.21876 1.01289 0.98399 0.94194 1.18647 0.90233 0.90181 0.98100 1.21165 1.33426 0.94956 1.05800 0.92698 1.24956 0.95369 0.97697 0.95739 1.69948 1.41539 1.14742 1.26458 0.86666 0.78432 0.79759 0.83688 1.20727 1.21320 1.19916 1.21997 1.00571 0.97526 0.96015 1.21716 0.78994 1.00891 0.99481 0.88159 0.91911 0.91873 0.91563 0.88754 0.92753 0.87854 0.88173 0.91138 0.91631 0.89557 0.93955 0.94707 0.92992 0.91997 0.93037 0.92118 0.90228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.86 10.47 -39.25 -0.41 -4.28 16 3 C 0.47 5.76 7.26 36.01 0.26 6.02 16 4 O -0.51 -7.45 15.67 -18.75 -0.29 -7.75 16 5 C -0.06 -0.77 2.48 -91.77 -0.23 -1.00 16 6 H 0.12 1.39 7.95 -51.93 -0.41 0.98 16 7 C -0.15 -1.62 8.86 37.16 0.33 -1.30 16 8 C -0.13 -1.69 2.87 -27.88 -0.08 -1.77 16 9 C 0.52 8.26 7.42 -10.99 -0.08 8.18 16 10 O -0.56 -9.90 13.38 5.56 0.07 -9.83 16 11 N -0.60 -10.22 2.98 -173.06 -0.52 -10.73 16 12 C 0.10 1.74 6.31 -3.93 -0.02 1.71 16 13 C -0.12 -2.54 5.19 -26.83 -0.14 -2.68 16 14 C 0.05 1.10 1.93 -91.73 -0.18 0.92 16 15 C -0.52 -13.63 8.48 -34.44 -0.29 -13.92 16 16 H 0.05 1.46 7.77 -52.49 -0.41 1.05 16 17 C 0.06 1.72 5.19 -17.82 -0.09 1.62 16 18 N -0.89 -24.49 12.16 55.43 0.67 -23.82 16 19 Si 0.89 20.81 29.55 -169.99 -5.02 15.79 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 C -0.12 -2.46 5.30 -26.63 -0.14 -2.60 16 24 C 0.11 1.96 6.43 -3.73 -0.02 1.94 16 25 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 29 H 0.09 1.20 5.95 -51.93 -0.31 0.89 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.10 1.39 7.49 -51.93 -0.39 1.00 16 32 H 0.10 1.24 7.95 -51.93 -0.41 0.82 16 33 H 0.07 1.06 5.94 -51.93 -0.31 0.75 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.09 2.05 6.87 -51.93 -0.36 1.69 16 36 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.03 0.89 8.09 -51.93 -0.42 0.47 16 38 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.08 1.38 7.00 -51.93 -0.36 1.02 16 LS Contribution 338.50 15.07 5.10 5.10 Total: -1.00 -29.82 338.50 -6.76 -36.58 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.74 Total: 0.48 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 0.38 Total: -1.55 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: 0.16 Total: -34.55 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.63 Total: -21.85 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.82 -6.76 -36.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542907757.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.227 kcal (2) G-P(sol) polarization free energy of solvation -29.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds