Wall clock time and date at job start Tue Mar 31 2020 06:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47453 * 2 1 4 4 C 1.37097 * 119.99893 * 92.95503 * 3 2 1 5 5 H 1.08003 * 120.00047 * 308.03883 * 4 3 2 6 6 C 1.38954 * 119.99964 * 128.04682 * 4 3 2 7 7 N 1.31414 * 119.99590 * 340.51951 * 6 4 3 8 8 Si 1.86797 * 119.99938 * 160.52308 * 6 4 3 9 9 H 1.48491 * 109.47258 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.46939 * 239.99681 * 8 6 4 11 11 H 1.48501 * 109.47093 * 120.00238 * 8 6 4 12 12 C 1.34772 * 119.99843 * 272.95439 * 3 2 1 13 13 O 1.21291 * 120.00364 * 355.06338 * 12 3 2 14 14 C 1.50700 * 120.00064 * 175.05509 * 12 3 2 15 15 H 1.08998 * 109.46879 * 49.74115 * 14 12 3 16 16 C 1.52998 * 109.47448 * 289.74264 * 14 12 3 17 17 C 1.53000 * 109.46831 * 179.97438 * 16 14 12 18 18 C 1.52990 * 109.47574 * 59.99981 * 17 16 14 19 19 C 1.52998 * 109.47057 * 299.99881 * 18 17 16 20 20 C 1.53000 * 109.47321 * 59.99877 * 19 18 17 21 21 H 1.08998 * 109.47157 * 60.00057 * 20 19 18 22 22 C 1.50696 * 109.47349 * 180.02562 * 20 19 18 23 23 O 1.20823 * 119.99952 * 119.99793 * 22 20 19 24 24 O 1.34229 * 119.99938 * 300.00065 * 22 20 19 25 25 C 1.45205 * 117.00028 * 180.02562 * 24 22 20 26 26 H 1.08999 * 109.47546 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46571 * 300.00134 * 1 2 3 28 28 H 1.09000 * 109.47190 * 59.99552 * 1 2 3 29 29 H 1.08998 * 109.46873 * 239.99365 * 2 1 3 30 30 H 1.09004 * 109.47099 * 119.99949 * 2 1 3 31 31 H 0.96999 * 120.00168 * 354.47664 * 7 6 4 32 32 H 1.08998 * 109.46959 * 299.99802 * 16 14 12 33 33 H 1.08995 * 109.47371 * 59.99630 * 16 14 12 34 34 H 1.09004 * 109.47420 * 299.99270 * 17 16 14 35 35 H 1.09009 * 109.46675 * 180.02562 * 17 16 14 36 36 H 1.08999 * 109.47309 * 179.97438 * 18 17 16 37 37 H 1.09002 * 109.47374 * 60.00016 * 18 17 16 38 38 H 1.08998 * 109.46959 * 299.99812 * 19 18 17 39 39 H 1.08999 * 109.47658 * 180.02562 * 19 18 17 40 40 H 1.08996 * 109.47244 * 59.99318 * 25 24 22 41 41 H 1.08998 * 109.47152 * 180.02562 * 25 24 22 42 42 H 1.09008 * 109.46814 * 299.99852 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3046 2.0070 1.1857 5 1 1.5714 2.0233 1.9785 6 6 3.5381 2.6206 1.3674 7 7 4.5537 2.2941 0.6000 8 14 3.7525 3.9092 2.7026 9 1 2.4670 4.0950 3.4223 10 1 4.1650 5.1960 2.0868 11 1 4.7961 3.4616 3.6596 12 6 2.1863 2.0365 -1.1656 13 8 2.0195 1.4559 -2.2174 14 6 2.5813 3.4908 -1.1623 15 1 3.4383 3.6330 -0.5039 16 6 1.4085 4.3368 -0.6627 17 6 1.8098 5.8132 -0.6588 18 6 2.1813 6.2446 -2.0788 19 6 3.3541 5.3986 -2.5785 20 6 2.9528 3.9222 -2.5825 21 1 2.0960 3.7803 -3.2411 22 6 4.1083 3.0889 -3.0740 23 8 4.5852 2.2375 -2.3616 24 8 4.6075 3.2925 -4.3032 25 6 5.7200 2.4528 -4.7103 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 4.4656 1.5696 -0.0389 32 1 0.5515 4.1946 -1.3210 33 1 1.1441 4.0298 0.3492 34 1 2.6666 5.9551 0.0000 35 1 0.9743 6.4158 -0.3023 36 1 2.4668 7.2965 -2.0761 37 1 1.3244 6.1028 -2.7375 38 1 4.2109 5.5405 -1.9198 39 1 3.6191 5.7062 -3.5900 40 1 5.4129 1.4072 -4.6884 41 1 6.0265 2.7208 -5.7214 42 1 6.5559 2.6004 -4.0265 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000545974431.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:16 Heat of formation + Delta-G solvation = -136.801513 kcal Electronic energy + Delta-G solvation = -25100.238131 eV Core-core repulsion = 21658.920101 eV Total energy + Delta-G solvation = -3441.318030 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.28645 -38.76932 -36.94160 -35.62895 -34.75387 -32.44469 -30.86673 -30.27845 -29.03349 -27.27077 -24.50535 -23.81312 -22.73563 -21.67766 -20.28773 -19.64511 -18.84882 -17.17771 -16.81132 -16.02745 -15.70022 -15.42660 -14.88211 -14.22994 -13.90263 -13.75624 -13.57523 -13.50402 -13.26611 -12.70095 -12.59717 -12.31265 -12.01333 -11.89601 -11.64948 -11.51424 -11.43454 -11.13471 -10.99796 -10.85350 -10.61048 -10.35082 -10.26637 -10.20618 -10.16076 -9.97784 -9.75863 -9.68304 -9.36732 -8.57746 -8.14713 -7.46500 -6.48864 -4.10576 3.10384 3.29618 3.30832 3.34466 3.46331 4.10839 4.25008 4.73646 5.09646 5.11263 5.17762 5.28696 5.47333 5.55630 5.65001 5.69621 5.76596 5.87663 5.90165 5.91863 5.98650 6.04002 6.08230 6.18461 6.19289 6.27683 6.46125 6.50958 6.53809 6.61977 6.66813 6.72202 6.86752 6.96706 6.98142 7.11965 7.28915 7.80718 8.31792 8.43011 8.63841 9.25424 9.55625 10.02358 10.77165 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.013307 B = 0.009281 C = 0.007798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.661317 B = 3016.278312 C = 3589.993709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.106 3.894 3 N -0.461 5.461 4 C -0.429 4.429 5 H 0.071 0.929 6 C 0.013 3.987 7 N -0.855 5.855 8 Si 1.064 2.936 9 H -0.281 1.281 10 H -0.278 1.278 11 H -0.285 1.285 12 C 0.514 3.486 13 O -0.611 6.611 14 C -0.097 4.097 15 H 0.137 0.863 16 C -0.102 4.102 17 C -0.122 4.122 18 C -0.115 4.115 19 C -0.110 4.110 20 C -0.055 4.055 21 H 0.099 0.901 22 C 0.463 3.537 23 O -0.468 6.468 24 O -0.372 6.372 25 C 0.039 3.961 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.293 0.707 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.091 0.909 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.216 6.599 -4.317 8.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.017 4.017 3 N -0.181 5.181 4 C -0.557 4.557 5 H 0.088 0.912 6 C -0.198 4.198 7 N -0.488 5.488 8 Si 0.890 3.110 9 H -0.207 1.207 10 H -0.204 1.204 11 H -0.212 1.212 12 C 0.305 3.695 13 O -0.496 6.496 14 C -0.118 4.118 15 H 0.154 0.846 16 C -0.140 4.140 17 C -0.160 4.160 18 C -0.152 4.152 19 C -0.148 4.148 20 C -0.075 4.075 21 H 0.117 0.883 22 C 0.303 3.697 23 O -0.351 6.351 24 O -0.290 6.290 25 C -0.055 4.055 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.109 0.891 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.033 7.039 -3.956 8.140 hybrid contribution -0.837 -1.501 -0.582 1.814 sum -1.869 5.538 -4.537 7.399 Atomic orbital electron populations 1.22028 0.97680 1.00147 1.01469 1.21335 0.93138 0.86600 1.00655 1.43366 1.59768 1.09271 1.05710 1.20044 1.01886 1.39366 0.94364 0.91158 1.26421 0.91123 1.00882 1.01342 1.70490 1.30403 1.27383 1.20503 0.83594 0.76029 0.76009 0.75372 1.20673 1.20382 1.21165 1.20260 0.77699 0.88285 0.83284 1.90470 1.57226 1.69844 1.32108 1.21470 1.02538 0.93072 0.94673 0.84580 1.21386 0.96276 0.93243 1.03046 1.21609 1.01277 0.96553 0.96513 1.21520 0.97860 0.98631 0.97190 1.21526 0.99029 0.92455 1.01775 1.20861 0.94350 0.93692 0.98552 0.88268 1.23638 0.83764 0.83207 0.79060 1.90722 1.57809 1.31169 1.55350 1.86458 1.47947 1.59632 1.34945 1.23075 0.87749 0.94827 0.99897 0.93418 0.92981 0.93202 0.92624 0.91938 0.89426 0.93153 0.89215 0.91612 0.92077 0.91948 0.91967 0.91349 0.91146 0.92396 0.89051 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 10.22 37.16 0.38 -2.66 16 2 C 0.11 2.46 6.11 -4.04 -0.02 2.44 16 3 N -0.46 -11.82 2.12 -114.81 -0.24 -12.07 16 4 C -0.43 -10.99 7.22 -14.93 -0.11 -11.10 16 5 H 0.07 1.79 7.90 -52.48 -0.41 1.37 16 6 C 0.01 0.34 3.37 -17.46 -0.06 0.28 16 7 N -0.86 -24.03 11.64 55.50 0.65 -23.39 16 8 Si 1.06 22.58 29.96 -169.99 -5.09 17.49 16 9 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 10 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 11 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 12 C 0.51 13.30 4.49 -10.99 -0.05 13.25 16 13 O -0.61 -17.01 14.36 -12.02 -0.17 -17.18 16 14 C -0.10 -2.19 0.82 -91.77 -0.08 -2.26 16 15 H 0.14 3.44 4.36 -51.93 -0.23 3.21 16 16 C -0.10 -1.96 5.07 -26.73 -0.14 -2.10 16 17 C -0.12 -1.92 5.92 -26.74 -0.16 -2.08 16 18 C -0.11 -1.60 5.92 -26.74 -0.16 -1.76 16 19 C -0.11 -1.79 5.14 -26.73 -0.14 -1.93 16 20 C -0.05 -1.12 1.79 -91.77 -0.16 -1.28 16 21 H 0.10 1.99 7.99 -51.93 -0.41 1.58 16 22 C 0.46 10.31 6.36 36.00 0.23 10.54 16 23 O -0.47 -12.15 12.80 -24.83 -0.32 -12.47 16 24 O -0.37 -7.07 10.47 -39.25 -0.41 -7.48 16 25 C 0.04 0.60 10.56 101.05 1.07 1.67 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.35 7.45 -51.93 -0.39 0.97 16 30 H 0.06 1.40 8.02 -51.93 -0.42 0.98 16 31 H 0.29 8.89 6.28 -40.82 -0.26 8.63 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.09 1.85 6.61 -51.93 -0.34 1.50 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 0.82 8.14 -51.92 -0.42 0.39 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 40 H 0.06 0.95 8.13 -51.93 -0.42 0.52 16 41 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 0.90 8.13 -51.92 -0.42 0.48 16 LS Contribution 330.06 15.07 4.97 4.97 Total: -1.00 -31.49 330.06 -6.76 -38.25 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -6.75 Total: 8.86 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 0.61 Total: 3.00 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.40 Total: -35.45 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -0.90 Total: -37.13 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.09 Total: 17.49 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.49 -6.76 -38.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545974431.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.550 kcal (2) G-P(sol) polarization free energy of solvation -31.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds