Wall clock time and date at job start Tue Mar 31 2020 06:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.46660 * 2 1 4 4 C 1.37102 * 120.00221 * 263.76866 * 3 2 1 5 5 H 1.07998 * 119.99982 * 186.96013 * 4 3 2 6 6 C 1.38950 * 119.99592 * 6.95627 * 4 3 2 7 7 N 1.31406 * 120.00279 * 25.96236 * 6 4 3 8 8 Si 1.86803 * 119.99834 * 205.96215 * 6 4 3 9 9 H 1.48502 * 109.47151 * 59.99957 * 8 6 4 10 10 H 1.48501 * 109.46985 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.46986 * 300.00095 * 8 6 4 12 12 C 1.34778 * 120.00053 * 83.77549 * 3 2 1 13 13 O 1.21294 * 119.99930 * 4.91088 * 12 3 2 14 14 C 1.50702 * 120.00061 * 184.92144 * 12 3 2 15 15 H 1.09003 * 109.47391 * 46.41179 * 14 12 3 16 16 C 1.53000 * 109.46761 * 286.41794 * 14 12 3 17 17 C 1.53009 * 109.47033 * 300.00012 * 16 14 12 18 18 C 1.53005 * 109.46948 * 300.00012 * 17 16 14 19 19 C 1.53000 * 109.47037 * 59.99813 * 18 17 16 20 20 C 1.52996 * 109.47281 * 300.00110 * 19 18 17 21 21 H 1.08997 * 109.47249 * 300.00034 * 20 19 18 22 22 C 1.50699 * 109.47374 * 179.97438 * 20 19 18 23 23 O 1.20822 * 120.00458 * 240.00375 * 22 20 19 24 24 O 1.34231 * 119.99762 * 59.99443 * 22 20 19 25 25 C 1.45203 * 117.00004 * 180.02562 * 24 22 20 26 26 H 1.09005 * 109.47227 * 175.27958 * 1 2 3 27 27 H 1.09004 * 109.47678 * 295.27306 * 1 2 3 28 28 H 1.09005 * 109.47661 * 55.27698 * 1 2 3 29 29 H 1.09000 * 109.47292 * 240.00306 * 2 1 3 30 30 H 1.09002 * 109.47557 * 119.99705 * 2 1 3 31 31 H 0.97000 * 120.00478 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.47569 * 59.99670 * 16 14 12 33 33 H 1.09002 * 109.47402 * 180.02562 * 16 14 12 34 34 H 1.08993 * 109.46907 * 60.00085 * 17 16 14 35 35 H 1.09000 * 109.46909 * 180.02562 * 17 16 14 36 36 H 1.08997 * 109.46660 * 180.02562 * 18 17 16 37 37 H 1.08997 * 109.46984 * 300.00091 * 18 17 16 38 38 H 1.08995 * 109.47051 * 179.97438 * 19 18 17 39 39 H 1.09009 * 109.46719 * 59.99990 * 19 18 17 40 40 H 1.09007 * 109.46888 * 300.00721 * 25 24 22 41 41 H 1.09002 * 109.47268 * 60.00207 * 25 24 22 42 42 H 1.08997 * 109.47455 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3682 1.9847 -1.1803 5 1 2.8327 2.9596 -1.1714 6 6 2.1253 1.3418 -2.3879 7 7 1.1564 0.4587 -2.4790 8 14 3.1760 1.7328 -3.8821 9 1 4.5960 1.4148 -3.5856 10 1 2.7176 0.9187 -5.0364 11 1 3.0502 3.1752 -4.2119 12 6 2.1234 2.0588 1.1603 13 8 1.8995 1.4983 2.2124 14 6 2.5191 3.5129 1.1506 15 1 1.9412 4.0417 0.3925 16 6 4.0105 3.6335 0.8309 17 6 4.8217 2.8912 1.8949 18 6 4.5433 3.5048 3.2686 19 6 3.0519 3.3843 3.5882 20 6 2.2408 4.1265 2.5242 21 1 2.5270 5.1782 2.5171 22 6 0.7718 4.0073 2.8386 23 8 0.0245 3.4854 2.0455 24 8 0.2934 4.4808 4.0000 25 6 -1.1314 4.3312 4.2361 26 1 -0.3634 -1.0242 -0.0846 27 1 -0.3634 0.4387 0.9293 28 1 -0.3634 0.5854 -0.8447 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 0.9871 0.0096 -3.3219 32 1 4.2089 3.1963 -0.1477 33 1 4.2968 4.6852 0.8243 34 1 4.5355 1.8396 1.9019 35 1 5.8842 2.9775 1.6674 36 1 5.1216 2.9763 4.0265 37 1 4.8295 4.5565 3.2615 38 1 2.8537 3.8210 4.5669 39 1 2.7657 2.3325 3.5952 40 1 -1.6857 4.8535 3.4562 41 1 -1.3931 3.2731 4.2212 42 1 -1.3853 4.7549 5.2077 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000545974432.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:19 Heat of formation + Delta-G solvation = -116.844888 kcal Electronic energy + Delta-G solvation = -24796.265337 eV Core-core repulsion = 21355.812690 eV Total energy + Delta-G solvation = -3440.452646 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.54065 -38.94644 -36.69348 -35.82647 -34.72328 -31.59720 -30.97607 -30.90321 -29.02007 -27.39645 -24.84893 -23.81199 -22.71625 -21.59948 -20.41256 -19.83825 -18.69617 -17.08112 -16.72182 -16.05993 -15.98486 -15.60957 -14.72388 -14.30702 -14.14179 -13.91915 -13.51433 -13.10298 -13.00550 -12.74270 -12.39963 -12.31035 -11.98960 -11.81519 -11.74496 -11.59569 -11.31869 -11.14422 -10.98751 -10.69403 -10.63860 -10.38644 -10.37247 -10.31417 -10.08790 -9.99705 -9.64123 -9.54385 -9.52468 -8.78269 -7.99274 -7.67776 -6.34196 -3.75948 2.84411 3.13268 3.17862 3.22834 3.24117 4.01524 4.11854 4.79484 5.03509 5.08919 5.18991 5.32898 5.35460 5.42339 5.55783 5.58764 5.70232 5.79169 5.80652 5.91932 5.99685 6.05587 6.24281 6.43025 6.45301 6.55759 6.66660 6.68036 6.76750 6.78001 6.86150 6.90377 6.95040 7.05882 7.17217 7.43733 7.52136 7.84559 7.87542 8.35782 8.51413 9.15617 9.66682 10.08689 10.65811 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.017963 B = 0.007085 C = 0.005974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.402291 B = 3951.292129 C = 4686.062056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.135 3.865 3 N -0.436 5.436 4 C -0.338 4.338 5 H 0.104 0.896 6 C 0.037 3.963 7 N -0.852 5.852 8 Si 0.909 3.091 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.480 3.520 13 O -0.607 6.607 14 C -0.079 4.079 15 H 0.091 0.909 16 C -0.113 4.113 17 C -0.120 4.120 18 C -0.110 4.110 19 C -0.133 4.133 20 C -0.051 4.051 21 H 0.095 0.905 22 C 0.467 3.533 23 O -0.484 6.484 24 O -0.367 6.367 25 C 0.037 3.963 26 H 0.030 0.970 27 H 0.027 0.973 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.034 0.966 31 H 0.267 0.733 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.120 0.880 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.074 6.846 7.568 10.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.012 3.988 3 N -0.153 5.153 4 C -0.466 4.466 5 H 0.121 0.879 6 C -0.168 4.168 7 N -0.489 5.489 8 Si 0.735 3.265 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.269 3.731 13 O -0.495 6.495 14 C -0.101 4.101 15 H 0.109 0.891 16 C -0.151 4.151 17 C -0.158 4.158 18 C -0.147 4.147 19 C -0.170 4.170 20 C -0.070 4.070 21 H 0.113 0.887 22 C 0.308 3.692 23 O -0.369 6.369 24 O -0.285 6.285 25 C -0.057 4.057 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.098 0.902 29 H 0.111 0.889 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.138 0.862 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.591 6.240 7.635 10.196 hybrid contribution 0.039 0.250 -1.033 1.063 sum 2.630 6.490 6.602 9.624 Atomic orbital electron populations 1.21874 0.96964 0.99443 1.01061 1.21191 0.94249 0.83355 1.00026 1.43698 1.55016 1.11307 1.05242 1.19718 1.38980 1.04746 0.83113 0.87871 1.25152 0.95732 0.97129 0.98788 1.70195 1.24852 1.27364 1.26519 0.86286 0.80785 0.78575 0.80828 1.19918 1.21012 1.19926 1.19442 0.82413 0.87440 0.83812 1.90312 1.58170 1.70250 1.30798 1.20934 0.97643 0.96621 0.94875 0.89134 1.21603 0.92662 1.00149 1.00658 1.21542 0.98852 1.00936 0.94420 1.21460 0.96009 1.00030 0.97206 1.22006 0.93876 1.05551 0.95541 1.20814 0.87428 1.01321 0.97468 0.88661 1.23734 0.91992 0.74579 0.78874 1.90708 1.59460 1.38568 1.48138 1.86470 1.26743 1.75152 1.40151 1.23124 0.78529 1.02494 1.01533 0.95060 0.95409 0.90167 0.88853 0.94754 0.92232 0.89238 0.92247 0.91277 0.92513 0.92271 0.92798 0.92408 0.86225 0.92425 0.92090 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 9.62 37.16 0.36 -3.01 16 2 C 0.13 3.42 5.29 -4.04 -0.02 3.40 16 3 N -0.44 -11.12 2.64 -114.81 -0.30 -11.42 16 4 C -0.34 -8.49 8.44 -14.93 -0.13 -8.62 16 5 H 0.10 2.42 4.86 -52.49 -0.25 2.17 16 6 C 0.04 0.92 4.90 -17.47 -0.09 0.83 16 7 N -0.85 -21.92 8.76 55.50 0.49 -21.43 16 8 Si 0.91 19.19 29.62 -169.99 -5.04 14.15 16 9 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 10 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 12 C 0.48 11.51 4.12 -10.98 -0.05 11.46 16 13 O -0.61 -15.51 11.88 -9.86 -0.12 -15.63 16 14 C -0.08 -1.58 1.34 -91.77 -0.12 -1.71 16 15 H 0.09 1.92 7.44 -51.93 -0.39 1.53 16 16 C -0.11 -1.92 5.10 -26.73 -0.14 -2.05 16 17 C -0.12 -1.92 5.70 -26.72 -0.15 -2.07 16 18 C -0.11 -1.57 5.92 -26.73 -0.16 -1.73 16 19 C -0.13 -2.22 4.86 -26.73 -0.13 -2.35 16 20 C -0.05 -0.90 2.38 -91.77 -0.22 -1.12 16 21 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 22 C 0.47 9.20 6.43 36.01 0.23 9.44 16 23 O -0.48 -11.40 14.28 -24.28 -0.35 -11.74 16 24 O -0.37 -6.22 10.47 -39.26 -0.41 -6.63 16 25 C 0.04 0.51 10.56 101.05 1.07 1.58 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 2.16 6.63 -51.93 -0.34 1.81 16 29 H 0.09 2.43 5.76 -51.93 -0.30 2.13 16 30 H 0.03 0.86 7.55 -51.93 -0.39 0.47 16 31 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 32 H 0.09 1.64 5.79 -51.93 -0.30 1.34 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 1.31 7.20 -51.93 -0.37 0.94 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.87 8.11 -51.93 -0.42 0.45 16 39 H 0.12 2.44 5.07 -51.92 -0.26 2.18 16 40 H 0.06 0.77 8.13 -51.93 -0.42 0.34 16 41 H 0.06 0.90 8.13 -51.93 -0.42 0.47 16 42 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 321.77 15.07 4.85 4.85 Total: -1.00 -29.82 321.77 -6.82 -36.64 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -6.40 Total: 7.15 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 0.46 Total: 4.06 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: 0.18 Total: -32.85 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -0.87 Total: -34.00 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.04 Total: 14.15 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.82 -6.82 -36.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545974432.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.203 kcal (2) G-P(sol) polarization free energy of solvation -29.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds