Wall clock time and date at job start Tue Mar 31 2020 06:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.46660 * 2 1 4 4 C 1.37102 * 120.00221 * 263.76866 * 3 2 1 5 5 H 1.07998 * 119.99982 * 186.96013 * 4 3 2 6 6 C 1.38950 * 119.99592 * 6.95627 * 4 3 2 7 7 N 1.31406 * 120.00279 * 25.96236 * 6 4 3 8 8 Si 1.86803 * 119.99834 * 205.96215 * 6 4 3 9 9 H 1.48502 * 109.47151 * 59.99957 * 8 6 4 10 10 H 1.48501 * 109.46985 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.46986 * 300.00095 * 8 6 4 12 12 C 1.34778 * 120.00053 * 83.77549 * 3 2 1 13 13 O 1.21294 * 119.99930 * 4.91088 * 12 3 2 14 14 C 1.50702 * 120.00061 * 184.92144 * 12 3 2 15 15 H 1.09003 * 109.47391 * 46.41179 * 14 12 3 16 16 C 1.53000 * 109.46761 * 286.41794 * 14 12 3 17 17 C 1.53009 * 109.47033 * 300.00012 * 16 14 12 18 18 C 1.53005 * 109.46948 * 300.00012 * 17 16 14 19 19 C 1.53000 * 109.47037 * 59.99813 * 18 17 16 20 20 C 1.52996 * 109.47281 * 300.00110 * 19 18 17 21 21 H 1.08997 * 109.47249 * 300.00034 * 20 19 18 22 22 C 1.50699 * 109.47374 * 179.97438 * 20 19 18 23 23 O 1.20822 * 120.00458 * 240.00375 * 22 20 19 24 24 O 1.34231 * 119.99762 * 59.99443 * 22 20 19 25 25 C 1.45203 * 117.00004 * 180.02562 * 24 22 20 26 26 H 1.09005 * 109.47227 * 175.27958 * 1 2 3 27 27 H 1.09004 * 109.47678 * 295.27306 * 1 2 3 28 28 H 1.09005 * 109.47661 * 55.27698 * 1 2 3 29 29 H 1.09000 * 109.47292 * 240.00306 * 2 1 3 30 30 H 1.09002 * 109.47557 * 119.99705 * 2 1 3 31 31 H 0.97000 * 120.00478 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.47569 * 59.99670 * 16 14 12 33 33 H 1.09002 * 109.47402 * 180.02562 * 16 14 12 34 34 H 1.08993 * 109.46907 * 60.00085 * 17 16 14 35 35 H 1.09000 * 109.46909 * 180.02562 * 17 16 14 36 36 H 1.08997 * 109.46660 * 180.02562 * 18 17 16 37 37 H 1.08997 * 109.46984 * 300.00091 * 18 17 16 38 38 H 1.08995 * 109.47051 * 179.97438 * 19 18 17 39 39 H 1.09009 * 109.46719 * 59.99990 * 19 18 17 40 40 H 1.09007 * 109.46888 * 300.00721 * 25 24 22 41 41 H 1.09002 * 109.47268 * 60.00207 * 25 24 22 42 42 H 1.08997 * 109.47455 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3682 1.9847 -1.1803 5 1 2.8327 2.9596 -1.1714 6 6 2.1253 1.3418 -2.3879 7 7 1.1564 0.4587 -2.4790 8 14 3.1760 1.7328 -3.8821 9 1 4.5960 1.4148 -3.5856 10 1 2.7176 0.9187 -5.0364 11 1 3.0502 3.1752 -4.2119 12 6 2.1234 2.0588 1.1603 13 8 1.8995 1.4983 2.2124 14 6 2.5191 3.5129 1.1506 15 1 1.9412 4.0417 0.3925 16 6 4.0105 3.6335 0.8309 17 6 4.8217 2.8912 1.8949 18 6 4.5433 3.5048 3.2686 19 6 3.0519 3.3843 3.5882 20 6 2.2408 4.1265 2.5242 21 1 2.5270 5.1782 2.5171 22 6 0.7718 4.0073 2.8386 23 8 0.0245 3.4854 2.0455 24 8 0.2934 4.4808 4.0000 25 6 -1.1314 4.3312 4.2361 26 1 -0.3634 -1.0242 -0.0846 27 1 -0.3634 0.4387 0.9293 28 1 -0.3634 0.5854 -0.8447 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 0.9871 0.0096 -3.3219 32 1 4.2089 3.1963 -0.1477 33 1 4.2968 4.6852 0.8243 34 1 4.5355 1.8396 1.9019 35 1 5.8842 2.9775 1.6674 36 1 5.1216 2.9763 4.0265 37 1 4.8295 4.5565 3.2615 38 1 2.8537 3.8210 4.5669 39 1 2.7657 2.3325 3.5952 40 1 -1.6857 4.8535 3.4562 41 1 -1.3931 3.2731 4.2212 42 1 -1.3853 4.7549 5.2077 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000545974432.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:18 Heat of formation + Delta-G solvation = -133.266436 kcal Electronic energy + Delta-G solvation = -24796.977429 eV Core-core repulsion = 21355.812690 eV Total energy + Delta-G solvation = -3441.164738 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.08718 -40.56623 -38.30604 -37.32887 -36.60306 -33.46698 -32.63512 -32.27945 -30.79000 -28.60251 -26.75485 -25.37093 -24.22588 -23.26949 -21.76153 -21.47221 -20.47985 -18.62650 -18.39774 -17.65697 -17.53169 -17.17215 -16.29308 -16.14544 -15.79123 -15.40484 -14.89559 -14.65452 -14.56156 -14.28134 -14.18561 -13.81750 -13.66361 -13.31131 -13.22746 -13.01611 -12.87325 -12.82703 -12.73434 -12.49316 -12.19838 -12.10296 -11.81597 -11.75764 -11.65460 -11.57255 -11.43793 -10.98046 -10.95584 -10.70351 -9.82962 -9.60935 -8.22974 -5.70902 1.33065 1.45805 1.51416 1.59237 1.85390 2.19863 2.35528 3.06696 3.19337 3.64250 3.86129 3.94159 4.25418 4.28437 4.32114 4.34168 4.35526 4.39712 4.50419 4.60693 4.63214 4.66835 4.71248 4.79971 4.90566 4.97899 5.07228 5.10358 5.17077 5.31022 5.32268 5.41015 5.43824 5.45544 5.48835 5.57424 5.71523 5.77676 6.00294 6.57328 6.87709 7.24378 7.77171 8.19937 8.78344 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.017963 B = 0.007085 C = 0.005974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.402291 B = 3951.292129 C = 4686.062056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.138 3.862 3 N -0.456 5.456 4 C -0.356 4.356 5 H 0.117 0.883 6 C -0.008 4.008 7 N -0.882 5.882 8 Si 0.979 3.021 9 H -0.268 1.268 10 H -0.288 1.288 11 H -0.265 1.265 12 C 0.474 3.526 13 O -0.629 6.629 14 C -0.077 4.077 15 H 0.073 0.927 16 C -0.109 4.109 17 C -0.118 4.118 18 C -0.102 4.102 19 C -0.128 4.128 20 C -0.052 4.052 21 H 0.140 0.860 22 C 0.463 3.537 23 O -0.535 6.535 24 O -0.362 6.362 25 C 0.031 3.969 26 H 0.052 0.948 27 H 0.006 0.994 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.026 0.974 31 H 0.267 0.733 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.026 0.974 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.043 0.957 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.007 9.264 8.191 13.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.014 3.986 3 N -0.173 5.173 4 C -0.483 4.483 5 H 0.134 0.866 6 C -0.210 4.210 7 N -0.520 5.520 8 Si 0.803 3.197 9 H -0.193 1.193 10 H -0.213 1.213 11 H -0.190 1.190 12 C 0.265 3.735 13 O -0.518 6.518 14 C -0.098 4.098 15 H 0.091 0.909 16 C -0.146 4.146 17 C -0.156 4.156 18 C -0.139 4.139 19 C -0.165 4.165 20 C -0.071 4.071 21 H 0.157 0.843 22 C 0.308 3.692 23 O -0.424 6.424 24 O -0.279 6.279 25 C -0.063 4.063 26 H 0.071 0.929 27 H 0.025 0.975 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.045 0.955 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.534 8.682 8.292 12.834 hybrid contribution -0.663 -0.522 -1.105 1.390 sum 3.872 8.160 7.188 11.543 Atomic orbital electron populations 1.21672 0.96842 1.00120 0.98776 1.21074 0.94243 0.84169 0.99064 1.43951 1.55871 1.11323 1.06166 1.20117 1.39364 1.05564 0.83234 0.86606 1.26016 0.96390 0.97135 1.01413 1.70293 1.25983 1.28523 1.27212 0.85202 0.78955 0.78569 0.76949 1.19291 1.21338 1.18970 1.20244 0.81171 0.89130 0.82957 1.90316 1.58667 1.71363 1.31496 1.20936 0.99553 0.93188 0.96133 0.90876 1.21618 0.90356 1.02669 0.99972 1.21531 1.00183 0.98421 0.95462 1.21454 0.94041 1.02232 0.96186 1.21889 0.95569 1.02759 0.96272 1.20991 0.86263 1.03641 0.96208 0.84290 1.24289 0.92767 0.73357 0.78827 1.90694 1.60869 1.40979 1.49845 1.86454 1.28488 1.74293 1.38627 1.23442 0.76862 1.01896 1.04061 0.92900 0.97471 0.92254 0.89569 0.95597 0.92271 0.91054 0.88106 0.95458 0.89759 0.90900 0.89212 0.90359 0.90519 0.92289 0.93846 0.84253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.03 9.62 71.98 0.69 -5.33 16 2 C 0.14 7.32 5.29 86.38 0.46 7.78 16 3 N -0.46 -24.07 2.64 -635.53 -1.68 -25.75 16 4 C -0.36 -18.18 8.44 84.04 0.71 -17.47 16 5 H 0.12 5.46 4.86 -2.91 -0.01 5.44 16 6 C -0.01 -0.38 4.90 84.93 0.42 0.04 16 7 N -0.88 -46.49 8.76 21.66 0.19 -46.30 16 8 Si 0.98 39.35 29.62 68.60 2.03 41.38 16 9 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 10 H -0.29 -11.60 7.11 99.48 0.71 -10.90 16 11 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 12 C 0.47 23.40 4.12 87.66 0.36 23.76 16 13 O -0.63 -33.48 11.88 11.65 0.14 -33.35 16 14 C -0.08 -3.02 1.34 -11.54 -0.02 -3.03 16 15 H 0.07 3.11 7.44 -2.39 -0.02 3.09 16 16 C -0.11 -3.43 5.10 30.60 0.16 -3.28 16 17 C -0.12 -3.52 5.70 30.60 0.17 -3.34 16 18 C -0.10 -2.53 5.92 30.60 0.18 -2.35 16 19 C -0.13 -4.00 4.86 30.59 0.15 -3.85 16 20 C -0.05 -1.73 2.38 -11.54 -0.03 -1.76 16 21 H 0.14 3.44 8.14 -2.39 -0.02 3.42 16 22 C 0.46 18.12 6.43 71.24 0.46 18.58 16 23 O -0.54 -25.98 14.28 27.27 0.39 -25.59 16 24 O -0.36 -11.73 10.47 -51.43 -0.54 -12.27 16 25 C 0.03 0.81 10.56 113.37 1.20 2.00 16 26 H 0.05 2.43 8.14 -2.38 -0.02 2.41 16 27 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 28 H 0.06 3.33 6.63 -2.38 -0.02 3.31 16 29 H 0.09 4.67 5.76 -2.39 -0.01 4.66 16 30 H 0.03 1.37 7.55 -2.39 -0.02 1.35 16 31 H 0.27 13.39 8.31 -92.71 -0.77 12.62 16 32 H 0.07 2.52 5.79 -2.39 -0.01 2.51 16 33 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.03 1.02 7.20 -2.39 -0.02 1.01 16 35 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.08 2.11 8.11 -2.39 -0.02 2.09 16 39 H 0.08 3.14 5.07 -2.38 -0.01 3.13 16 40 H 0.06 1.54 8.13 -2.38 -0.02 1.52 16 41 H 0.04 1.29 8.13 -2.39 -0.02 1.27 16 42 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -68.57 321.77 6.46 -62.12 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: 1.01 Total: 28.01 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 4.91 Total: 11.75 kcal Atomic # 7 Polarization: -70.56 SS G_CDS: -1.49 Total: -72.05 kcal Atomic # 8 Polarization: -71.20 SS G_CDS: -0.01 Total: -71.21 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Total: -68.57 6.46 -62.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545974432.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.151 kcal (2) G-P(sol) polarization free energy of solvation -68.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds