Wall clock time and date at job start Tue Mar 31 2020 06:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47019 * 2 1 4 4 C 1.37104 * 120.00010 * 264.70891 * 3 2 1 5 5 H 1.07998 * 119.99597 * 192.12489 * 4 3 2 6 6 C 1.38946 * 119.99803 * 12.12990 * 4 3 2 7 7 N 1.31411 * 120.00413 * 18.37308 * 6 4 3 8 8 Si 1.86809 * 119.99653 * 198.37264 * 6 4 3 9 9 H 1.48499 * 109.46623 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47018 * 299.99968 * 8 6 4 11 11 H 1.48501 * 109.46976 * 60.00256 * 8 6 4 12 12 C 1.34779 * 120.00201 * 84.71512 * 3 2 1 13 13 O 1.21297 * 119.99551 * 4.97037 * 12 3 2 14 14 C 1.50694 * 120.00273 * 184.96954 * 12 3 2 15 15 H 1.09004 * 109.47445 * 332.44179 * 14 12 3 16 16 C 1.53001 * 109.47187 * 92.43890 * 14 12 3 17 17 C 1.52995 * 109.47399 * 180.02562 * 16 14 12 18 18 C 1.52999 * 109.46925 * 299.99954 * 17 16 14 19 19 C 1.52999 * 109.47445 * 60.00179 * 18 17 16 20 20 C 1.52999 * 109.47487 * 212.43790 * 14 12 3 21 21 H 1.09004 * 109.47096 * 300.00603 * 20 14 12 22 22 C 1.50701 * 109.46802 * 59.99802 * 20 14 12 23 23 O 1.20825 * 120.00198 * 0.02562 * 22 20 14 24 24 O 1.34237 * 119.99793 * 180.02562 * 22 20 14 25 25 C 1.45193 * 116.99902 * 180.02562 * 24 22 20 26 26 H 1.08999 * 109.47470 * 52.35785 * 1 2 3 27 27 H 1.08994 * 109.47693 * 172.36424 * 1 2 3 28 28 H 1.09004 * 109.47143 * 292.36155 * 1 2 3 29 29 H 1.09004 * 109.46745 * 240.00456 * 2 1 3 30 30 H 1.08994 * 109.47017 * 120.00116 * 2 1 3 31 31 H 0.96991 * 120.00009 * 180.02562 * 7 6 4 32 32 H 1.09007 * 109.47058 * 300.00482 * 16 14 12 33 33 H 1.09001 * 109.46910 * 59.99348 * 16 14 12 34 34 H 1.09005 * 109.47045 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.46995 * 59.99947 * 17 16 14 36 36 H 1.09000 * 109.47279 * 299.99820 * 18 17 16 37 37 H 1.09004 * 109.47341 * 180.02562 * 18 17 16 38 38 H 1.08997 * 109.47361 * 180.02562 * 19 18 17 39 39 H 1.09000 * 109.47176 * 59.99577 * 19 18 17 40 40 H 1.08997 * 109.47359 * 59.99782 * 25 24 22 41 41 H 1.09000 * 109.47194 * 179.97438 * 25 24 22 42 42 H 1.09003 * 109.46986 * 299.99964 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3500 1.9910 -1.1823 5 1 2.8893 2.9267 -1.1745 6 6 1.9922 1.4053 -2.3904 7 7 1.0500 0.4898 -2.4233 8 14 2.8507 1.9192 -3.9679 9 1 2.2909 1.1510 -5.1089 10 1 2.6387 3.3710 -4.1965 11 1 4.3053 1.6434 -3.8523 12 6 2.1415 2.0524 1.1622 13 8 1.9349 1.4858 2.2146 14 6 2.5361 3.5068 1.1543 15 1 3.1311 3.7171 0.2655 16 6 1.2774 4.3766 1.1428 17 6 1.6779 5.8532 1.1341 18 6 2.5022 6.1654 2.3847 19 6 3.7609 5.2957 2.3962 20 6 3.3601 3.8186 2.4052 21 1 2.7650 3.6084 3.2939 22 6 4.5998 2.9619 2.4165 23 8 4.8036 2.1822 1.5162 24 8 5.4776 3.0649 3.4268 25 6 6.6494 2.2093 3.3717 26 1 -0.3634 0.6276 -0.8137 27 1 -0.3634 -1.0185 -0.1365 28 1 -0.3633 0.3910 0.9504 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 0.8006 0.0807 -3.2666 32 1 0.6903 4.1545 0.2516 33 1 0.6824 4.1663 2.0315 34 1 0.7812 6.4729 1.1264 35 1 2.2727 6.0631 0.2451 36 1 1.9074 5.9555 3.2737 37 1 2.7872 7.2175 2.3788 38 1 4.3479 5.5178 3.2874 39 1 4.3557 5.5055 1.5072 40 1 7.2168 2.4281 2.4671 41 1 7.2745 2.3926 4.2456 42 1 6.3367 1.1652 3.3607 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000545974433.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:22 Heat of formation + Delta-G solvation = -125.349911 kcal Electronic energy + Delta-G solvation = -24452.580817 eV Core-core repulsion = 21011.759366 eV Total energy + Delta-G solvation = -3440.821452 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.47431 -38.79089 -37.08831 -35.91918 -34.83433 -31.42639 -31.10531 -30.96287 -29.19600 -27.46543 -24.75323 -23.92980 -22.94696 -21.55565 -20.51513 -19.49945 -18.88666 -17.11168 -16.95135 -16.31491 -15.91939 -15.81407 -14.53189 -14.32285 -14.08293 -13.83837 -13.69828 -13.57140 -13.24322 -12.72531 -12.48593 -12.16993 -12.10771 -12.05183 -11.78074 -11.58740 -11.18760 -11.04728 -11.02463 -10.88641 -10.60770 -10.50599 -10.43157 -10.42436 -10.30277 -10.03671 -9.87336 -9.67493 -9.55970 -8.81178 -8.17557 -7.64375 -6.25133 -3.76986 2.75467 3.08880 3.16038 3.24347 3.27495 4.01498 4.14478 4.71276 4.87628 4.95770 5.14086 5.17789 5.30014 5.37310 5.43818 5.50477 5.56517 5.68530 5.71469 5.80591 5.84855 5.93416 6.07803 6.24322 6.31846 6.38252 6.41506 6.45160 6.66315 6.71470 6.79424 6.83007 6.89655 6.96370 7.14135 7.44826 7.53294 7.85720 7.90232 8.25956 8.55133 9.18037 9.67578 10.07676 10.72093 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014951 B = 0.006838 C = 0.006427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.310971 B = 4093.656987 C = 4355.789401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.137 3.863 3 N -0.431 5.431 4 C -0.320 4.320 5 H 0.097 0.903 6 C 0.032 3.968 7 N -0.864 5.864 8 Si 0.916 3.084 9 H -0.284 1.284 10 H -0.274 1.274 11 H -0.275 1.275 12 C 0.472 3.528 13 O -0.620 6.620 14 C -0.079 4.079 15 H 0.096 0.904 16 C -0.101 4.101 17 C -0.120 4.120 18 C -0.116 4.116 19 C -0.109 4.109 20 C -0.059 4.059 21 H 0.112 0.888 22 C 0.462 3.538 23 O -0.483 6.483 24 O -0.366 6.366 25 C 0.036 3.964 26 H 0.085 0.915 27 H 0.033 0.967 28 H 0.020 0.980 29 H 0.093 0.907 30 H 0.032 0.968 31 H 0.266 0.734 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.095 0.905 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.768 8.923 6.447 11.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.014 3.986 3 N -0.147 5.147 4 C -0.448 4.448 5 H 0.114 0.886 6 C -0.172 4.172 7 N -0.504 5.504 8 Si 0.743 3.257 9 H -0.210 1.210 10 H -0.200 1.200 11 H -0.201 1.201 12 C 0.261 3.739 13 O -0.508 6.508 14 C -0.101 4.101 15 H 0.114 0.886 16 C -0.139 4.139 17 C -0.157 4.157 18 C -0.154 4.154 19 C -0.147 4.147 20 C -0.079 4.079 21 H 0.130 0.870 22 C 0.304 3.696 23 O -0.367 6.367 24 O -0.284 6.284 25 C -0.058 4.058 26 H 0.103 0.897 27 H 0.052 0.948 28 H 0.039 0.961 29 H 0.111 0.889 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.113 0.887 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.657 8.217 6.472 11.450 hybrid contribution 0.612 -0.112 -1.044 1.215 sum 5.269 8.105 5.429 11.087 Atomic orbital electron populations 1.21942 0.96897 1.00208 1.00195 1.21127 0.94150 0.83362 0.99953 1.43639 1.54877 1.11072 1.05152 1.19614 1.34227 1.08168 0.82790 0.88571 1.25175 0.95681 0.97147 0.99155 1.70149 1.25887 1.27618 1.26714 0.86177 0.79885 0.78591 0.81095 1.20979 1.19958 1.20063 1.19638 0.82621 0.87736 0.83916 1.90487 1.58782 1.70109 1.31443 1.21031 0.96979 0.95123 0.96942 0.88550 1.21363 0.96347 0.93105 1.03099 1.21582 0.99659 0.96518 0.97957 1.21534 0.96150 0.98793 0.98876 1.21548 0.98319 0.92145 1.02699 1.20957 0.91076 0.93613 1.02239 0.86965 1.23813 0.84203 0.82270 0.79309 1.90745 1.74540 1.35244 1.36183 1.86474 1.32941 1.61072 1.47902 1.23148 0.85473 0.94509 1.02633 0.89659 0.94825 0.96100 0.88907 0.94915 0.92333 0.90374 0.91827 0.91878 0.91727 0.91652 0.91795 0.90845 0.91511 0.92274 0.88700 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 9.49 37.16 0.35 -2.91 16 2 C 0.14 3.59 5.29 -4.04 -0.02 3.57 16 3 N -0.43 -11.41 2.64 -114.82 -0.30 -11.72 16 4 C -0.32 -8.33 9.24 -14.93 -0.14 -8.47 16 5 H 0.10 2.41 5.70 -52.49 -0.30 2.11 16 6 C 0.03 0.81 5.02 -17.47 -0.09 0.72 16 7 N -0.86 -22.36 8.29 55.50 0.46 -21.90 16 8 Si 0.92 19.93 29.59 -169.99 -5.03 14.90 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 12 C 0.47 11.87 4.87 -10.99 -0.05 11.82 16 13 O -0.62 -17.01 15.69 5.54 0.09 -16.93 16 14 C -0.08 -1.61 1.21 -91.77 -0.11 -1.72 16 15 H 0.10 2.04 5.76 -51.93 -0.30 1.74 16 16 C -0.10 -1.74 5.18 -26.73 -0.14 -1.88 16 17 C -0.12 -1.58 5.92 -26.73 -0.16 -1.74 16 18 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16 19 C -0.11 -1.45 5.14 -26.71 -0.14 -1.59 16 20 C -0.06 -1.05 1.84 -91.75 -0.17 -1.21 16 21 H 0.11 2.02 7.85 -51.93 -0.41 1.61 16 22 C 0.46 9.02 6.82 36.01 0.25 9.27 16 23 O -0.48 -11.23 14.54 -18.75 -0.27 -11.50 16 24 O -0.37 -6.06 10.47 -39.28 -0.41 -6.47 16 25 C 0.04 0.48 10.56 101.05 1.07 1.55 16 26 H 0.08 2.20 6.42 -51.93 -0.33 1.87 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 2.51 5.96 -51.93 -0.31 2.20 16 30 H 0.03 0.87 7.52 -51.93 -0.39 0.48 16 31 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 32 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.86 8.11 -51.93 -0.42 0.44 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 41 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 LS Contribution 332.36 15.07 5.01 5.01 Total: -1.00 -31.19 332.36 -6.64 -37.83 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -6.67 Total: 4.88 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 0.49 Total: 5.89 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.16 Total: -33.62 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -0.60 Total: -34.90 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.03 Total: 14.90 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.19 -6.64 -37.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545974433.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.523 kcal (2) G-P(sol) polarization free energy of solvation -31.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds