Wall clock time and date at job start Tue Mar 31 2020 06:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47019 * 2 1 4 4 C 1.37104 * 120.00010 * 264.70891 * 3 2 1 5 5 H 1.07998 * 119.99597 * 192.12489 * 4 3 2 6 6 C 1.38946 * 119.99803 * 12.12990 * 4 3 2 7 7 N 1.31411 * 120.00413 * 18.37308 * 6 4 3 8 8 Si 1.86809 * 119.99653 * 198.37264 * 6 4 3 9 9 H 1.48499 * 109.46623 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47018 * 299.99968 * 8 6 4 11 11 H 1.48501 * 109.46976 * 60.00256 * 8 6 4 12 12 C 1.34779 * 120.00201 * 84.71512 * 3 2 1 13 13 O 1.21297 * 119.99551 * 4.97037 * 12 3 2 14 14 C 1.50694 * 120.00273 * 184.96954 * 12 3 2 15 15 H 1.09004 * 109.47445 * 332.44179 * 14 12 3 16 16 C 1.53001 * 109.47187 * 92.43890 * 14 12 3 17 17 C 1.52995 * 109.47399 * 180.02562 * 16 14 12 18 18 C 1.52999 * 109.46925 * 299.99954 * 17 16 14 19 19 C 1.52999 * 109.47445 * 60.00179 * 18 17 16 20 20 C 1.52999 * 109.47487 * 212.43790 * 14 12 3 21 21 H 1.09004 * 109.47096 * 300.00603 * 20 14 12 22 22 C 1.50701 * 109.46802 * 59.99802 * 20 14 12 23 23 O 1.20825 * 120.00198 * 0.02562 * 22 20 14 24 24 O 1.34237 * 119.99793 * 180.02562 * 22 20 14 25 25 C 1.45193 * 116.99902 * 180.02562 * 24 22 20 26 26 H 1.08999 * 109.47470 * 52.35785 * 1 2 3 27 27 H 1.08994 * 109.47693 * 172.36424 * 1 2 3 28 28 H 1.09004 * 109.47143 * 292.36155 * 1 2 3 29 29 H 1.09004 * 109.46745 * 240.00456 * 2 1 3 30 30 H 1.08994 * 109.47017 * 120.00116 * 2 1 3 31 31 H 0.96991 * 120.00009 * 180.02562 * 7 6 4 32 32 H 1.09007 * 109.47058 * 300.00482 * 16 14 12 33 33 H 1.09001 * 109.46910 * 59.99348 * 16 14 12 34 34 H 1.09005 * 109.47045 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.46995 * 59.99947 * 17 16 14 36 36 H 1.09000 * 109.47279 * 299.99820 * 18 17 16 37 37 H 1.09004 * 109.47341 * 180.02562 * 18 17 16 38 38 H 1.08997 * 109.47361 * 180.02562 * 19 18 17 39 39 H 1.09000 * 109.47176 * 59.99577 * 19 18 17 40 40 H 1.08997 * 109.47359 * 59.99782 * 25 24 22 41 41 H 1.09000 * 109.47194 * 179.97438 * 25 24 22 42 42 H 1.09003 * 109.46986 * 299.99964 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3500 1.9910 -1.1823 5 1 2.8893 2.9267 -1.1745 6 6 1.9922 1.4053 -2.3904 7 7 1.0500 0.4898 -2.4233 8 14 2.8507 1.9192 -3.9679 9 1 2.2909 1.1510 -5.1089 10 1 2.6387 3.3710 -4.1965 11 1 4.3053 1.6434 -3.8523 12 6 2.1415 2.0524 1.1622 13 8 1.9349 1.4858 2.2146 14 6 2.5361 3.5068 1.1543 15 1 3.1311 3.7171 0.2655 16 6 1.2774 4.3766 1.1428 17 6 1.6779 5.8532 1.1341 18 6 2.5022 6.1654 2.3847 19 6 3.7609 5.2957 2.3962 20 6 3.3601 3.8186 2.4052 21 1 2.7650 3.6084 3.2939 22 6 4.5998 2.9619 2.4165 23 8 4.8036 2.1822 1.5162 24 8 5.4776 3.0649 3.4268 25 6 6.6494 2.2093 3.3717 26 1 -0.3634 0.6276 -0.8137 27 1 -0.3634 -1.0185 -0.1365 28 1 -0.3633 0.3910 0.9504 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 0.8006 0.0807 -3.2666 32 1 0.6903 4.1545 0.2516 33 1 0.6824 4.1663 2.0315 34 1 0.7812 6.4729 1.1264 35 1 2.2727 6.0631 0.2451 36 1 1.9074 5.9555 3.2737 37 1 2.7872 7.2175 2.3788 38 1 4.3479 5.5178 3.2874 39 1 4.3557 5.5055 1.5072 40 1 7.2168 2.4281 2.4671 41 1 7.2745 2.3926 4.2456 42 1 6.3367 1.1652 3.3607 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000545974433.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:21 Heat of formation + Delta-G solvation = -143.176545 kcal Electronic energy + Delta-G solvation = -24453.353838 eV Core-core repulsion = 21011.759366 eV Total energy + Delta-G solvation = -3441.594473 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.99777 -40.50151 -38.58820 -37.39733 -36.83984 -33.41455 -32.58388 -32.37820 -30.95344 -28.63360 -26.73709 -25.45983 -24.31031 -23.28732 -21.85361 -21.02318 -20.65359 -18.74428 -18.54554 -18.04249 -17.55037 -17.23771 -16.24037 -16.14502 -15.73057 -15.30738 -15.00506 -14.92117 -14.82167 -14.29550 -14.10433 -13.89241 -13.66467 -13.40652 -13.34509 -13.04913 -12.85459 -12.82215 -12.68417 -12.38356 -12.29209 -12.12963 -11.92325 -11.80290 -11.77900 -11.64353 -11.40926 -11.20279 -11.03544 -10.83967 -10.11997 -9.68542 -8.21477 -5.80182 1.24379 1.41743 1.47279 1.55176 1.77305 2.11241 2.31030 2.97560 3.15596 3.59745 3.75614 3.88387 4.21378 4.23335 4.28107 4.30678 4.35332 4.38764 4.40921 4.49930 4.55725 4.63757 4.66846 4.82988 4.90455 4.95876 4.98059 5.08261 5.15637 5.21516 5.26646 5.31437 5.36665 5.41243 5.43464 5.48329 5.58026 5.80232 5.89293 6.53125 6.78811 7.18066 7.67892 8.08578 8.76384 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014951 B = 0.006838 C = 0.006427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.310971 B = 4093.656987 C = 4355.789401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.138 3.862 3 N -0.446 5.446 4 C -0.343 4.343 5 H 0.101 0.899 6 C -0.006 4.006 7 N -0.883 5.883 8 Si 0.982 3.018 9 H -0.280 1.280 10 H -0.260 1.260 11 H -0.281 1.281 12 C 0.461 3.539 13 O -0.652 6.652 14 C -0.073 4.073 15 H 0.084 0.916 16 C -0.097 4.097 17 C -0.113 4.113 18 C -0.110 4.110 19 C -0.102 4.102 20 C -0.059 4.059 21 H 0.108 0.892 22 C 0.460 3.540 23 O -0.531 6.531 24 O -0.360 6.360 25 C 0.029 3.971 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.013 0.987 29 H 0.081 0.919 30 H 0.016 0.984 31 H 0.269 0.731 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.141 0.859 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.521 11.488 6.625 14.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.014 3.986 3 N -0.162 5.162 4 C -0.470 4.470 5 H 0.118 0.882 6 C -0.208 4.208 7 N -0.522 5.522 8 Si 0.806 3.194 9 H -0.205 1.205 10 H -0.185 1.185 11 H -0.206 1.206 12 C 0.251 3.749 13 O -0.543 6.543 14 C -0.094 4.094 15 H 0.102 0.898 16 C -0.135 4.135 17 C -0.151 4.151 18 C -0.148 4.148 19 C -0.139 4.139 20 C -0.078 4.078 21 H 0.126 0.874 22 C 0.304 3.696 23 O -0.420 6.420 24 O -0.276 6.276 25 C -0.064 4.064 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.032 0.968 29 H 0.099 0.901 30 H 0.035 0.965 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.159 0.841 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.410 10.808 6.669 13.804 hybrid contribution 0.410 -1.018 -1.034 1.508 sum 5.820 9.790 5.635 12.707 Atomic orbital electron populations 1.21739 0.95491 1.01081 0.99062 1.21053 0.95259 0.83856 0.98420 1.43876 1.55241 1.11104 1.06007 1.19869 1.35187 1.08889 0.83056 0.88152 1.25982 0.95862 0.97146 1.01812 1.70232 1.26310 1.28111 1.27570 0.85158 0.78083 0.78972 0.77169 1.20487 1.18463 1.20638 1.20545 0.81611 0.89709 0.82998 1.90439 1.60128 1.71366 1.32365 1.20987 0.98444 0.92033 0.97905 0.89798 1.21354 0.94591 0.95794 1.01743 1.21573 1.01102 0.93201 0.99175 1.21553 0.94903 1.00239 0.98065 1.21598 0.99616 0.88763 1.03946 1.21043 0.89922 0.96506 1.00372 0.87420 1.24267 0.84863 0.81484 0.78981 1.90725 1.75821 1.37273 1.38134 1.86460 1.33437 1.61307 1.46429 1.23491 0.84655 0.93231 1.05038 0.91067 0.92778 0.96776 0.90058 0.96535 0.92091 0.92708 0.92219 0.89552 0.91494 0.90958 0.88344 0.88570 0.91262 0.92023 0.84105 0.93714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.76 9.49 71.98 0.68 -5.08 16 2 C 0.14 7.49 5.29 86.38 0.46 7.95 16 3 N -0.45 -24.52 2.64 -635.55 -1.68 -26.19 16 4 C -0.34 -18.27 9.24 84.04 0.78 -17.50 16 5 H 0.10 5.14 5.70 -2.91 -0.02 5.12 16 6 C -0.01 -0.33 5.02 84.93 0.43 0.10 16 7 N -0.88 -46.25 8.29 21.66 0.18 -46.07 16 8 Si 0.98 40.82 29.59 68.60 2.03 42.85 16 9 H -0.28 -11.34 7.11 99.48 0.71 -10.64 16 10 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 11 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 12 C 0.46 24.02 4.87 87.65 0.43 24.44 16 13 O -0.65 -37.23 15.69 -3.08 -0.05 -37.28 16 14 C -0.07 -2.97 1.21 -11.54 -0.01 -2.98 16 15 H 0.08 3.62 5.76 -2.38 -0.01 3.61 16 16 C -0.10 -3.31 5.18 30.59 0.16 -3.15 16 17 C -0.11 -2.68 5.92 30.59 0.18 -2.50 16 18 C -0.11 -2.14 5.92 30.59 0.18 -1.96 16 19 C -0.10 -2.41 5.14 30.61 0.16 -2.26 16 20 C -0.06 -2.04 1.84 -11.52 -0.02 -2.06 16 21 H 0.11 3.84 7.85 -2.38 -0.02 3.82 16 22 C 0.46 18.01 6.82 71.24 0.49 18.50 16 23 O -0.53 -25.48 14.54 21.97 0.32 -25.16 16 24 O -0.36 -11.50 10.47 -51.49 -0.54 -12.03 16 25 C 0.03 0.74 10.56 113.37 1.20 1.94 16 26 H 0.07 3.76 6.42 -2.39 -0.02 3.74 16 27 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.08 4.57 5.96 -2.39 -0.01 4.56 16 30 H 0.02 0.92 7.52 -2.39 -0.02 0.90 16 31 H 0.27 13.33 8.31 -92.72 -0.77 12.56 16 32 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 33 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 34 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.10 1.89 8.11 -2.39 -0.02 1.87 16 39 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16 41 H 0.14 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.04 1.28 8.13 -2.39 -0.02 1.26 16 Total: -1.00 -70.25 332.36 6.36 -63.89 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 1.00 Total: 24.55 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 5.10 Total: 15.44 kcal Atomic # 7 Polarization: -70.76 SS G_CDS: -1.50 Total: -72.26 kcal Atomic # 8 Polarization: -74.21 SS G_CDS: -0.27 Total: -74.47 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Total: -70.25 6.36 -63.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545974433.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.290 kcal (2) G-P(sol) polarization free energy of solvation -70.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds