Wall clock time and date at job start Tue Mar 31 2020 06:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45191 * 109.47614 * 2 1 4 4 C 1.34229 * 117.00476 * 179.97438 * 3 2 1 5 5 O 1.20822 * 119.99789 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00243 * 179.97438 * 4 3 2 7 7 C 1.52997 * 112.85029 * 309.67128 * 6 4 3 8 8 N 1.46505 * 109.47212 * 48.80105 * 7 6 4 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00597 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99622 * 179.97438 * 9 8 7 12 12 C 1.52997 * 109.47212 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.47466 * 180.02562 * 12 11 9 14 14 H 1.08006 * 119.99920 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00428 * 180.02562 * 13 12 11 16 16 N 1.31520 * 120.00162 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99868 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47023 * 90.00014 * 17 15 13 19 19 H 1.48502 * 109.47442 * 209.99974 * 17 15 13 20 20 H 1.48498 * 109.47139 * 330.00202 * 17 15 13 21 21 C 1.53790 * 113.68790 * 80.93938 * 6 4 3 22 22 C 1.53775 * 87.07946 * 89.12499 * 21 6 4 23 23 C 1.53773 * 113.61317 * 178.47010 * 6 4 3 24 24 H 1.08998 * 109.46885 * 59.99690 * 1 2 3 25 25 H 1.08992 * 109.47265 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46622 * 300.00222 * 1 2 3 27 27 H 1.08996 * 109.47079 * 239.99406 * 2 1 3 28 28 H 1.09003 * 109.46615 * 119.99910 * 2 1 3 29 29 H 1.09002 * 109.47153 * 288.80097 * 7 6 4 30 30 H 1.09001 * 109.46832 * 168.80288 * 7 6 4 31 31 H 0.96996 * 119.99606 * 0.02562 * 8 7 6 32 32 H 1.09001 * 109.47380 * 300.00190 * 11 9 8 33 33 H 1.09002 * 109.47060 * 60.00278 * 11 9 8 34 34 H 1.09001 * 109.47289 * 299.99918 * 12 11 9 35 35 H 1.09002 * 109.47153 * 60.00002 * 12 11 9 36 36 H 0.97006 * 119.99550 * 179.97438 * 16 15 13 37 37 H 1.08995 * 113.61021 * 203.67569 * 21 6 4 38 38 H 1.08997 * 113.61084 * 334.57400 * 21 6 4 39 39 H 1.08998 * 113.61939 * 270.88180 * 22 21 6 40 40 H 1.08999 * 113.61214 * 139.97804 * 22 21 6 41 41 H 1.09001 * 113.62003 * 25.35300 * 23 6 4 42 42 H 1.09003 * 113.61658 * 156.25542 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3688 0.0000 4 6 3.3449 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9209 2.9373 0.0000 7 6 3.3169 3.8297 -1.0861 8 7 1.8558 3.7321 -1.0416 9 6 1.1066 4.4372 -1.9121 10 8 1.6418 5.1522 -2.7326 11 6 -0.3964 4.3363 -1.8668 12 6 -1.0005 5.2288 -2.9527 13 6 -2.5034 5.1285 -2.9070 14 1 -2.9801 4.4915 -2.1766 15 6 -3.2699 5.8491 -3.7982 16 7 -4.5816 5.7611 -3.7585 17 14 -2.4455 6.9504 -5.0618 18 1 -2.1826 6.1729 -6.2995 19 1 -3.3365 8.0959 -5.3767 20 1 -1.1619 7.4577 -4.5139 21 6 3.9515 3.5938 1.3904 22 6 5.3415 2.9616 1.5717 23 6 5.4579 2.9681 0.0383 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.6732 3.5043 -2.0635 30 1 3.6173 4.8635 -0.9155 31 1 1.4277 3.1605 -0.3851 32 1 -0.6966 3.3026 -2.0380 33 1 -0.7530 4.6610 -0.8892 34 1 -0.7004 6.2627 -2.7819 35 1 -0.6439 4.9038 -3.9301 36 1 -5.1208 6.2684 -4.3853 37 1 3.9681 4.6832 1.3585 38 1 3.2003 3.2008 2.0754 39 1 5.3133 1.9610 2.0032 40 1 6.0581 3.6170 2.0667 41 1 5.9230 2.0699 -0.3681 42 1 5.8864 3.8864 -0.3631 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563758820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:38 Heat of formation + Delta-G solvation = -116.169993 kcal Electronic energy + Delta-G solvation = -22912.817727 eV Core-core repulsion = 19472.394347 eV Total energy + Delta-G solvation = -3440.423381 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.51622 -39.23138 -38.64796 -36.70932 -34.23799 -33.43684 -31.91665 -31.29183 -28.99252 -26.18091 -26.13519 -24.72045 -23.07416 -22.09481 -21.07779 -19.95078 -19.44823 -17.75686 -17.12854 -16.84555 -16.65992 -15.90869 -15.68275 -15.17472 -14.94745 -14.60327 -14.24553 -14.04454 -13.71037 -13.33988 -13.09506 -12.84312 -12.72737 -12.53773 -12.43459 -12.11859 -12.00851 -11.75197 -11.40224 -11.37794 -10.93964 -10.90980 -10.78346 -10.75207 -10.56734 -10.12553 -10.01241 -9.75844 -9.20025 -9.12876 -8.81351 -8.48575 -6.01248 -3.99600 1.85636 2.25364 3.18578 3.39348 3.40472 3.46046 3.57266 4.05400 4.09276 4.32011 4.36977 4.43818 4.52861 4.71971 4.75279 5.00775 5.04043 5.26416 5.33505 5.34480 5.37298 5.45525 5.50205 5.53078 5.60157 5.61690 5.70945 5.76669 5.84296 5.95077 6.13952 6.15122 6.20255 6.66653 6.76447 7.39957 7.42687 7.47115 7.80779 7.92141 8.52830 8.72553 9.02166 9.62173 11.11588 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021390 B = 0.004026 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.681730 B = 6953.231554 C = 7870.463095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.064 3.936 3 O -0.354 6.354 4 C 0.492 3.508 5 O -0.502 6.502 6 C -0.100 4.100 7 C 0.138 3.862 8 N -0.738 5.738 9 C 0.510 3.490 10 O -0.545 6.545 11 C -0.121 4.121 12 C 0.001 3.999 13 C -0.524 4.524 14 H 0.072 0.928 15 C 0.069 3.931 16 N -0.904 5.904 17 Si 0.877 3.123 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.261 1.261 21 C -0.118 4.118 22 C -0.143 4.143 23 C -0.112 4.112 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.406 0.594 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.023 0.977 35 H 0.018 0.982 36 H 0.263 0.737 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.257 -9.813 12.755 24.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.009 4.009 3 O -0.271 6.271 4 C 0.334 3.666 5 O -0.389 6.389 6 C -0.102 4.102 7 C 0.014 3.986 8 N -0.397 5.397 9 C 0.298 3.702 10 O -0.421 6.421 11 C -0.160 4.160 12 C -0.036 4.036 13 C -0.561 4.561 14 H 0.091 0.909 15 C -0.132 4.132 16 N -0.543 5.543 17 Si 0.704 3.296 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.185 1.185 21 C -0.155 4.155 22 C -0.181 4.181 23 C -0.149 4.149 24 H 0.093 0.907 25 H 0.099 0.901 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.245 0.755 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.042 0.958 35 H 0.037 0.963 36 H 0.072 0.928 37 H 0.121 0.879 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 18.656 -9.563 12.079 24.195 hybrid contribution 0.071 0.022 -0.443 0.450 sum 18.727 -9.540 11.635 24.023 Atomic orbital electron populations 1.21869 0.91916 1.03340 1.04354 1.23122 0.95873 0.79421 1.02512 1.86324 1.24067 1.33054 1.83623 1.22825 0.80708 0.91178 0.71898 1.90648 1.60459 1.42615 1.45159 1.22086 0.98413 0.90012 0.99667 1.21171 0.81739 0.98776 0.96941 1.46420 1.05646 1.49312 1.38331 1.21521 0.91017 0.78206 0.79419 1.90645 1.74751 1.39336 1.37379 1.21639 0.87988 1.03184 1.03228 1.19368 0.95914 0.95028 0.93338 1.21122 0.89136 1.27690 1.18196 0.90940 1.24968 0.94660 0.96388 0.97219 1.69918 1.04287 1.42385 1.37751 0.86802 0.80037 0.80640 0.82111 1.20277 1.21477 1.18513 1.23028 0.98181 1.01350 0.92955 1.22913 0.97149 1.01663 0.96351 1.22903 0.90753 1.04143 0.97141 0.90674 0.90061 0.91154 0.91104 0.91230 0.91250 0.90054 0.75454 0.89752 0.89651 0.95832 0.96331 0.92760 0.87887 0.90483 0.89809 0.90358 0.89542 0.88124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 10.29 37.16 0.38 -0.89 16 2 C 0.06 0.59 6.19 37.16 0.23 0.82 16 3 O -0.35 -3.86 7.17 -39.25 -0.28 -4.15 16 4 C 0.49 5.63 6.72 36.01 0.24 5.87 16 5 O -0.50 -6.68 15.58 -18.75 -0.29 -6.97 16 6 C -0.10 -0.97 1.06 -154.85 -0.16 -1.13 16 7 C 0.14 1.65 5.14 -4.04 -0.02 1.63 16 8 N -0.74 -10.33 5.11 -60.29 -0.31 -10.64 16 9 C 0.51 9.44 7.83 -10.99 -0.09 9.35 16 10 O -0.54 -12.13 15.98 5.56 0.09 -12.04 16 11 C -0.12 -2.37 5.64 -27.88 -0.16 -2.52 16 12 C 0.00 0.04 3.33 -27.89 -0.09 -0.06 16 13 C -0.52 -14.99 9.66 -34.44 -0.33 -15.33 16 14 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 15 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 16 N -0.90 -28.04 13.96 55.43 0.77 -27.26 16 17 Si 0.88 22.67 27.47 -169.99 -4.67 18.00 16 18 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 20 H -0.26 -6.72 6.54 56.52 0.37 -6.35 16 21 C -0.12 -0.90 7.22 -25.92 -0.19 -1.09 16 22 C -0.14 -1.02 7.75 -25.92 -0.20 -1.22 16 23 C -0.11 -0.89 7.02 -25.92 -0.18 -1.08 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 28 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 0.94 7.94 -51.93 -0.41 0.52 16 31 H 0.41 5.03 5.69 -40.82 -0.23 4.79 16 32 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 35 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.10 0.71 7.96 -51.93 -0.41 0.29 16 38 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.09 0.78 7.42 -51.93 -0.39 0.39 16 42 H 0.10 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 346.94 15.07 5.23 5.23 Total: -1.00 -34.80 346.94 -6.99 -41.79 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -6.86 Total: -0.26 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -0.67 Total: -3.70 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.47 Total: -37.90 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.48 Total: -23.16 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.67 Total: 18.00 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.80 -6.99 -41.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563758820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.383 kcal (2) G-P(sol) polarization free energy of solvation -34.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds