Wall clock time and date at job start Tue Mar 31 2020 06:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34225 * 117.00415 * 2 1 4 4 O 1.20833 * 119.99871 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00378 * 179.97438 * 3 2 1 6 6 N 1.46494 * 109.46939 * 179.97438 * 5 3 2 7 7 C 1.37102 * 120.00173 * 263.51586 * 6 5 3 8 8 H 1.08000 * 119.99883 * 140.33347 * 7 6 5 9 9 C 1.38949 * 119.99890 * 320.33541 * 7 6 5 10 10 N 1.31409 * 120.00464 * 342.05783 * 9 7 6 11 11 Si 1.86807 * 119.99786 * 162.05478 * 9 7 6 12 12 H 1.48502 * 109.46827 * 60.00204 * 11 9 7 13 13 H 1.48497 * 109.47107 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.46974 * 300.00132 * 11 9 7 15 15 C 1.34779 * 120.00119 * 83.52502 * 6 5 3 16 16 O 1.21293 * 119.99770 * 5.90055 * 15 6 5 17 17 C 1.50695 * 120.00008 * 185.90096 * 15 6 5 18 18 H 1.09009 * 109.47257 * 36.44997 * 17 15 6 19 19 C 1.53004 * 109.47132 * 156.45099 * 17 15 6 20 20 C 1.53000 * 109.47221 * 180.02562 * 19 17 15 21 21 C 1.52998 * 109.46950 * 299.99810 * 20 19 17 22 22 H 1.09000 * 109.46961 * 299.99875 * 21 20 19 23 23 C 1.53000 * 109.46950 * 180.02562 * 21 20 19 24 24 C 1.53001 * 109.47330 * 60.00224 * 21 20 19 25 25 C 1.52994 * 109.46908 * 300.00126 * 24 21 20 26 26 H 1.09000 * 109.47057 * 59.99869 * 1 2 3 27 27 H 1.08992 * 109.47245 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46669 * 300.00201 * 1 2 3 29 29 H 1.09000 * 109.46952 * 59.99939 * 5 3 2 30 30 H 1.08994 * 109.47123 * 300.00479 * 5 3 2 31 31 H 0.96996 * 120.00143 * 179.97438 * 10 9 7 32 32 H 1.09003 * 109.46912 * 300.00000 * 19 17 15 33 33 H 1.08995 * 109.46979 * 59.99978 * 19 17 15 34 34 H 1.09009 * 109.47333 * 59.99797 * 20 19 17 35 35 H 1.09003 * 109.46892 * 179.97438 * 20 19 17 36 36 H 1.09005 * 109.47156 * 59.99605 * 23 21 20 37 37 H 1.08998 * 109.47458 * 180.02562 * 23 21 20 38 38 H 1.09004 * 109.47429 * 300.00457 * 23 21 20 39 39 H 1.09004 * 109.46674 * 59.99772 * 24 21 20 40 40 H 1.08998 * 109.47215 * 179.97438 * 24 21 20 41 41 H 1.09009 * 109.47068 * 299.99816 * 25 24 21 42 42 H 1.09007 * 109.47562 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5665 1.2748 0.0006 6 7 3.9818 2.6796 -0.0002 7 6 4.3052 3.2982 -1.1801 8 1 4.0014 4.3197 -1.3553 9 6 5.0239 2.6110 -2.1507 10 7 5.6920 1.5262 -1.8286 11 14 5.0402 3.2291 -3.9134 12 1 5.6070 4.6011 -3.9516 13 1 5.8730 2.3255 -4.7471 14 1 3.6529 3.2517 -4.4429 15 6 4.0461 3.3639 1.1592 16 8 3.8647 2.7907 2.2126 17 6 4.3434 4.8412 1.1466 18 1 3.8662 5.3006 0.2809 19 6 3.8023 5.4813 2.4267 20 6 4.1036 6.9812 2.4137 21 6 5.6164 7.1969 2.3357 22 1 6.0938 6.7379 3.2014 23 6 5.9177 8.6968 2.3234 24 6 6.1575 6.5569 1.0557 25 6 5.8562 5.0570 1.0687 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 3.9565 0.7805 -0.8891 30 1 3.9558 0.7808 0.8907 31 1 6.1933 1.0463 -2.5062 32 1 2.7246 5.3280 2.4820 33 1 4.2796 5.0219 3.2923 34 1 3.6261 7.4403 1.5479 35 1 3.7177 7.4372 3.3254 36 1 5.5322 9.1524 3.2355 37 1 6.9953 8.8506 2.2674 38 1 5.4401 9.1563 1.4580 39 1 5.6799 7.0160 0.1901 40 1 7.2351 6.7109 1.0000 41 1 6.3337 4.5979 1.9344 42 1 6.2421 4.6008 0.1570 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571407783.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:09 Heat of formation + Delta-G solvation = -143.919400 kcal Electronic energy + Delta-G solvation = -23753.575578 eV Core-core repulsion = 20311.948892 eV Total energy + Delta-G solvation = -3441.626685 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.86736 -39.09078 -37.35538 -35.71220 -34.73027 -32.21956 -31.61487 -30.27537 -28.75104 -26.86861 -25.93268 -24.61009 -22.13602 -21.65520 -20.38348 -19.41853 -19.00761 -17.08230 -16.94118 -16.31385 -15.70761 -15.29133 -14.84791 -14.62169 -14.27590 -13.88511 -13.81735 -13.49702 -13.13823 -12.94411 -12.73127 -12.43678 -11.98456 -11.89653 -11.68736 -11.64917 -11.43188 -11.34073 -11.10214 -10.91491 -10.75648 -10.59339 -10.51555 -10.38065 -10.23800 -10.13948 -9.80741 -9.67639 -9.49816 -9.20591 -8.44041 -7.63902 -6.47552 -4.18812 3.06504 3.09956 3.18014 3.20420 3.26168 3.90705 4.12671 4.66126 4.90405 5.06405 5.08560 5.20630 5.44848 5.51192 5.58402 5.61451 5.68128 5.86751 5.87224 5.90613 5.92555 5.97192 6.00545 6.04039 6.16536 6.21370 6.31955 6.42254 6.50667 6.57792 6.67333 6.69436 6.76786 6.77901 7.02128 7.02802 7.05268 7.39644 7.78275 8.23982 8.58050 8.99206 9.37767 9.81448 10.57293 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014029 B = 0.006639 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.390622 B = 4216.596974 C = 5605.350633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.369 6.369 3 C 0.444 3.556 4 O -0.507 6.507 5 C 0.127 3.873 6 N -0.430 5.430 7 C -0.331 4.331 8 H 0.091 0.909 9 C 0.043 3.957 10 N -0.866 5.866 11 Si 0.915 3.085 12 H -0.269 1.269 13 H -0.282 1.282 14 H -0.273 1.273 15 C 0.498 3.502 16 O -0.598 6.598 17 C -0.082 4.082 18 H 0.086 0.914 19 C -0.101 4.101 20 C -0.110 4.110 21 C -0.094 4.094 22 H 0.067 0.933 23 C -0.145 4.145 24 C -0.109 4.109 25 C -0.102 4.102 26 H 0.056 0.944 27 H 0.092 0.908 28 H 0.056 0.944 29 H 0.141 0.859 30 H 0.098 0.902 31 H 0.273 0.727 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.585 4.955 2.322 5.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.286 6.286 3 C 0.286 3.714 4 O -0.394 6.394 5 C 0.001 3.999 6 N -0.149 5.149 7 C -0.459 4.459 8 H 0.109 0.891 9 C -0.163 4.163 10 N -0.502 5.502 11 Si 0.741 3.259 12 H -0.195 1.195 13 H -0.208 1.208 14 H -0.199 1.199 15 C 0.288 3.712 16 O -0.483 6.483 17 C -0.103 4.103 18 H 0.104 0.896 19 C -0.139 4.139 20 C -0.148 4.148 21 C -0.112 4.112 22 H 0.086 0.914 23 C -0.203 4.203 24 C -0.147 4.147 25 C -0.140 4.140 26 H 0.075 0.925 27 H 0.111 0.889 28 H 0.074 0.926 29 H 0.158 0.842 30 H 0.116 0.884 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.774 4.818 2.731 5.815 hybrid contribution -0.331 0.205 -1.105 1.172 sum -2.105 5.023 1.626 5.684 Atomic orbital electron populations 1.23083 0.78208 1.02587 1.01938 1.86555 1.22146 1.34931 1.84930 1.25481 0.93749 0.80809 0.71359 1.90566 1.67109 1.36436 1.45254 1.20927 0.83764 0.88380 1.06860 1.42988 1.57264 1.08393 1.06228 1.19359 1.33795 0.99707 0.93020 0.89117 1.25399 0.93860 0.96606 1.00436 1.69857 1.27319 1.18544 1.34514 0.86188 0.78513 0.79033 0.82204 1.19451 1.20771 1.19852 1.20519 0.78119 0.89413 0.83168 1.90514 1.55164 1.71130 1.31499 1.20951 0.97455 0.93078 0.98817 0.89580 1.21366 1.00615 0.93986 0.97910 1.21585 0.95424 0.96615 1.01171 1.21170 0.96213 0.95090 0.98762 0.91448 1.21833 1.00980 0.96173 1.01286 1.21576 0.99993 0.95999 0.97120 1.21358 0.94215 0.95249 1.03156 0.92515 0.88929 0.92572 0.84182 0.88382 0.91694 0.92431 0.91452 0.92230 0.92535 0.93172 0.93040 0.92883 0.92031 0.92392 0.92556 0.89815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.56 101.05 1.07 1.62 16 2 O -0.37 -7.28 10.56 -39.24 -0.41 -7.69 16 3 C 0.44 10.28 7.98 36.01 0.29 10.56 16 4 O -0.51 -12.83 16.02 -18.76 -0.30 -13.13 16 5 C 0.13 3.04 5.49 -5.20 -0.03 3.01 16 6 N -0.43 -10.82 2.07 -116.10 -0.24 -11.06 16 7 C -0.33 -8.24 7.81 -14.93 -0.12 -8.35 16 8 H 0.09 2.21 6.53 -52.49 -0.34 1.86 16 9 C 0.04 1.03 4.96 -17.47 -0.09 0.95 16 10 N -0.87 -21.75 11.50 55.50 0.64 -21.11 16 11 Si 0.91 19.10 29.59 -169.99 -5.03 14.07 16 12 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 13 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 14 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 15 C 0.50 12.27 6.52 -10.99 -0.07 12.20 16 16 O -0.60 -16.00 15.73 5.55 0.09 -15.91 16 17 C -0.08 -1.67 1.82 -91.77 -0.17 -1.84 16 18 H 0.09 1.78 6.63 -51.92 -0.34 1.43 16 19 C -0.10 -1.82 4.72 -26.73 -0.13 -1.95 16 20 C -0.11 -1.59 5.20 -26.73 -0.14 -1.73 16 21 C -0.09 -1.27 2.72 -90.62 -0.25 -1.51 16 22 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 23 C -0.15 -1.62 9.19 37.16 0.34 -1.28 16 24 C -0.11 -1.63 5.21 -26.73 -0.14 -1.77 16 25 C -0.10 -1.89 5.12 -26.73 -0.14 -2.02 16 26 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 27 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 29 H 0.14 3.42 5.65 -51.93 -0.29 3.13 16 30 H 0.10 2.34 7.55 -51.93 -0.39 1.95 16 31 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 1.28 7.88 -51.93 -0.41 0.87 16 34 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 1.07 8.14 -51.92 -0.42 0.64 16 42 H 0.08 1.72 7.35 -51.92 -0.38 1.34 16 LS Contribution 339.81 15.07 5.12 5.12 Total: -1.00 -29.35 339.81 -6.49 -35.84 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -6.79 Total: 5.99 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 0.44 Total: 7.88 kcal Atomic # 7 Polarization: -32.57 SS G_CDS: 0.40 Total: -32.17 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -0.63 Total: -36.74 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.35 -6.49 -35.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571407783.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.079 kcal (2) G-P(sol) polarization free energy of solvation -29.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds