Wall clock time and date at job start Tue Mar 31 2020 06:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45206 * 109.47130 * 2 1 4 4 C 1.34227 * 117.00069 * 180.02562 * 3 2 1 5 5 O 1.20821 * 120.00188 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99736 * 179.97438 * 4 3 2 7 7 C 1.50699 * 110.43435 * 51.04977 * 6 4 3 8 8 O 1.21282 * 120.00176 * 241.64017 * 7 6 4 9 9 N 1.34790 * 119.99867 * 61.63869 * 7 6 4 10 10 C 1.46496 * 119.99719 * 5.18819 * 9 7 6 11 11 C 1.46495 * 119.99784 * 185.18410 * 9 7 6 12 12 C 1.50699 * 109.47049 * 90.00299 * 11 9 7 13 13 H 1.08008 * 119.99973 * 359.97438 * 12 11 9 14 14 C 1.37884 * 120.00467 * 180.02562 * 12 11 9 15 15 N 1.31516 * 119.99286 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00243 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47156 * 59.99928 * 16 14 12 18 18 H 1.48497 * 109.46986 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47108 * 299.99698 * 16 14 12 20 20 C 1.54889 * 110.49282 * 288.36645 * 6 4 3 21 21 C 1.54885 * 102.74967 * 203.38321 * 20 6 4 22 22 C 1.54264 * 104.20136 * 37.93955 * 21 20 6 23 23 C 1.53880 * 106.59595 * 336.39283 * 22 21 20 24 24 H 1.09001 * 109.46767 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47357 * 300.00058 * 1 2 3 26 26 H 1.08992 * 109.47682 * 60.00516 * 1 2 3 27 27 H 1.09000 * 109.47755 * 239.99584 * 2 1 3 28 28 H 1.09005 * 109.47666 * 119.99209 * 2 1 3 29 29 H 1.08998 * 109.47106 * 86.52372 * 10 9 7 30 30 H 1.09002 * 109.46877 * 206.52177 * 10 9 7 31 31 H 1.09002 * 109.47123 * 326.51598 * 10 9 7 32 32 H 1.08997 * 109.46896 * 209.99713 * 11 9 7 33 33 H 1.09000 * 109.47280 * 330.00288 * 11 9 7 34 34 H 0.97005 * 119.99248 * 180.02562 * 15 14 12 35 35 H 1.08997 * 110.75428 * 85.06136 * 20 6 4 36 36 H 1.09004 * 110.75297 * 321.69346 * 20 6 4 37 37 H 1.09004 * 110.48485 * 279.26116 * 21 20 6 38 38 H 1.09003 * 110.48585 * 156.62182 * 21 20 6 39 39 H 1.08992 * 110.03550 * 95.67722 * 22 21 20 40 40 H 1.08998 * 110.03321 * 217.06037 * 22 21 20 41 41 H 1.08997 * 110.03343 * 119.28148 * 23 22 21 42 42 H 1.09000 * 110.03091 * 240.71516 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0015 6 6 3.9206 2.9375 -0.0012 7 6 3.3017 3.7633 1.0971 8 8 2.6680 4.7602 0.8224 9 7 3.4524 3.3938 2.3845 10 6 4.3108 2.2564 2.7245 11 6 2.7578 4.1298 3.4438 12 6 1.4073 3.5065 3.6860 13 1 1.0972 2.6482 3.1083 14 6 0.5670 4.0325 4.6444 15 7 0.9445 5.0779 5.3474 16 14 -1.1073 3.2603 4.9441 17 1 -0.9326 1.8449 5.3579 18 1 -1.8113 4.0062 6.0179 19 1 -1.9086 3.3156 3.6951 20 6 3.7048 3.6129 -1.3782 21 6 4.8209 4.6863 -1.4110 22 6 6.0265 3.9996 -0.7368 23 6 5.4541 2.8876 0.1597 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5137 0.8901 29 1 5.3397 2.5983 2.8358 30 1 3.9720 1.8127 3.6607 31 1 4.2591 1.5120 1.9300 32 1 3.3463 4.0891 4.3603 33 1 2.6293 5.1687 3.1402 34 1 0.3535 5.4477 6.0219 35 1 2.7202 4.0774 -1.4306 36 1 3.8371 2.8933 -2.1863 37 1 4.5188 5.5680 -0.8457 38 1 5.0612 4.9554 -2.4396 39 1 6.6820 3.5688 -1.4935 40 1 6.5772 4.7207 -0.1328 41 1 5.8318 1.9171 -0.1621 42 1 5.7266 3.0688 1.1994 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572527110.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:15 Heat of formation + Delta-G solvation = -125.735176 kcal Electronic energy + Delta-G solvation = -24325.677287 eV Core-core repulsion = 20884.839129 eV Total energy + Delta-G solvation = -3440.838158 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.18002 -39.15401 -37.02648 -36.22802 -34.90984 -32.64549 -31.73514 -29.91354 -28.79612 -27.50459 -25.89247 -23.84368 -23.34699 -22.02555 -20.75218 -20.23132 -18.80529 -17.57304 -16.80334 -16.54436 -16.34804 -15.73038 -15.44967 -14.87052 -14.41544 -14.31704 -13.94928 -13.58889 -13.17285 -12.90169 -12.85202 -12.51141 -12.19994 -12.11010 -12.00764 -11.65913 -11.50295 -11.38502 -11.27426 -11.14589 -10.99151 -10.97034 -10.82826 -10.58402 -10.45006 -10.40957 -10.16237 -10.14678 -9.65221 -8.94648 -8.43853 -7.69200 -6.04984 -4.09479 2.21027 2.66765 3.29073 3.31140 3.35321 3.39335 3.81094 4.42594 4.48687 4.54622 4.75743 4.97096 4.99044 5.04528 5.19714 5.29666 5.29999 5.42381 5.43225 5.51735 5.63908 5.68776 5.70659 5.81108 5.85900 5.94509 5.98254 6.02373 6.10035 6.13832 6.26468 6.30229 6.45613 6.54136 7.00589 7.41086 7.49333 7.80574 7.91366 8.22091 8.32515 8.84832 9.00501 9.55124 11.03219 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015357 B = 0.006981 C = 0.005571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.894214 B = 4010.100969 C = 5024.620747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.063 3.937 3 O -0.340 6.340 4 C 0.489 3.511 5 O -0.510 6.510 6 C -0.082 4.082 7 C 0.530 3.470 8 O -0.523 6.523 9 N -0.596 5.596 10 C 0.070 3.930 11 C 0.246 3.754 12 C -0.526 4.526 13 H 0.058 0.942 14 C 0.062 3.938 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.275 1.275 20 C -0.095 4.095 21 C -0.122 4.122 22 C -0.122 4.122 23 C -0.118 4.118 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.033 0.967 33 H 0.047 0.953 34 H 0.264 0.736 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.049 -7.609 -11.876 15.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.256 6.256 4 C 0.333 3.667 5 O -0.399 6.399 6 C -0.087 4.087 7 C 0.314 3.686 8 O -0.399 6.399 9 N -0.328 5.328 10 C -0.074 4.074 11 C 0.127 3.873 12 C -0.565 4.565 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.534 5.534 16 Si 0.724 3.276 17 H -0.203 1.203 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.133 4.133 21 C -0.159 4.159 22 C -0.160 4.160 23 C -0.155 4.155 24 H 0.096 0.904 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.110 0.890 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.823 -7.254 -11.823 15.458 hybrid contribution -0.934 -0.786 0.406 1.287 sum 5.889 -8.040 -11.416 15.154 Atomic orbital electron populations 1.21808 0.92517 1.02685 1.04138 1.23049 0.95714 0.80090 1.02249 1.86635 1.23694 1.32274 1.82959 1.22971 0.80981 0.91480 0.71287 1.90614 1.60453 1.42493 1.46318 1.21732 0.97643 0.89960 0.99384 1.19379 0.80761 0.85524 0.82947 1.90656 1.40798 1.26264 1.82177 1.48104 1.46361 1.31428 1.06906 1.21985 0.93855 0.89288 1.02280 1.19344 0.91274 0.92969 0.83692 1.21394 1.00859 1.14714 1.19560 0.92422 1.24921 0.98399 0.94936 0.95745 1.69925 1.37192 1.22694 1.23540 0.86575 0.83926 0.79144 0.77912 1.20278 1.21141 1.20084 1.22386 1.01786 0.97465 0.91657 1.22356 0.94069 0.98638 1.00853 1.22138 0.97985 0.97249 0.98591 1.22468 0.89625 1.01231 1.02200 0.90381 0.90843 0.91501 0.91449 0.91109 0.92995 0.90485 0.92270 0.94856 0.93518 0.92650 0.88809 0.90979 0.90238 0.91176 0.91446 0.91328 0.89005 0.89780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 10.29 37.15 0.38 -1.50 16 2 C 0.06 0.88 6.19 37.15 0.23 1.11 16 3 O -0.34 -6.06 10.00 -39.25 -0.39 -6.46 16 4 C 0.49 8.48 4.84 36.00 0.17 8.65 16 5 O -0.51 -8.79 14.10 -18.75 -0.26 -9.06 16 6 C -0.08 -1.39 0.50 -155.15 -0.08 -1.47 16 7 C 0.53 11.31 6.09 -10.98 -0.07 11.25 16 8 O -0.52 -12.94 14.79 5.56 0.08 -12.86 16 9 N -0.60 -13.10 2.85 -182.96 -0.52 -13.62 16 10 C 0.07 1.24 8.84 59.84 0.53 1.77 16 11 C 0.25 6.48 5.18 -5.20 -0.03 6.46 16 12 C -0.53 -14.98 9.39 -34.44 -0.32 -15.31 16 13 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 15 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 16 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 C -0.10 -1.40 5.51 -24.74 -0.14 -1.53 16 21 C -0.12 -1.57 6.53 -25.08 -0.16 -1.73 16 22 C -0.12 -1.44 6.80 -25.61 -0.17 -1.62 16 23 C -0.12 -1.64 4.90 -25.61 -0.13 -1.77 16 24 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.78 6.73 -51.93 -0.35 0.43 16 30 H 0.08 1.38 8.05 -51.93 -0.42 0.96 16 31 H 0.06 1.01 3.85 -51.93 -0.20 0.81 16 32 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 33 H 0.05 1.37 7.36 -51.93 -0.38 0.99 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.09 1.53 7.37 -51.93 -0.38 1.15 16 36 H 0.07 0.90 8.05 -51.93 -0.42 0.49 16 37 H 0.08 1.18 7.78 -51.93 -0.40 0.78 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.09 1.23 6.78 -51.93 -0.35 0.88 16 42 H 0.08 1.19 5.01 -51.93 -0.26 0.93 16 LS Contribution 336.71 15.07 5.07 5.07 Total: -1.00 -32.78 336.71 -6.69 -39.48 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -6.51 Total: 0.45 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 0.12 Total: 5.99 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.22 Total: -39.42 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.57 Total: -28.37 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.78 -6.69 -39.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572527110.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.257 kcal (2) G-P(sol) polarization free energy of solvation -32.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds