Wall clock time and date at job start Tue Mar 31 2020 06:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.45196 * 109.47014 * 2 1 4 4 C 1.34225 * 116.99867 * 179.97438 * 3 2 1 5 5 O 1.20832 * 120.00158 * 0.02562 * 4 3 2 6 6 C 1.50706 * 120.00220 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.46690 * 60.00332 * 6 4 3 8 8 C 1.52999 * 109.47158 * 300.00329 * 6 4 3 9 9 C 1.53000 * 109.47226 * 180.02562 * 6 4 3 10 10 C 1.50694 * 109.47002 * 180.02562 * 9 6 4 11 11 O 1.21290 * 120.00015 * 0.02562 * 10 9 6 12 12 N 1.34783 * 120.00106 * 179.97438 * 10 9 6 13 13 C 1.37093 * 120.00100 * 180.02562 * 12 10 9 14 14 H 1.08001 * 119.99873 * 224.29549 * 13 12 10 15 15 C 1.38949 * 120.00265 * 44.29232 * 13 12 10 16 16 N 1.31413 * 119.99917 * 18.22289 * 15 13 12 17 17 Si 1.86800 * 120.00189 * 198.22235 * 15 13 12 18 18 H 1.48500 * 109.46908 * 90.00326 * 17 15 13 19 19 H 1.48498 * 109.47192 * 210.00185 * 17 15 13 20 20 H 1.48497 * 109.46872 * 330.00379 * 17 15 13 21 21 C 1.46499 * 119.99525 * 359.97438 * 12 10 9 22 22 C 1.53000 * 117.49609 * 183.22299 * 21 12 10 23 23 C 1.52997 * 59.99984 * 252.51219 * 22 21 12 24 24 H 1.08997 * 109.47122 * 300.00337 * 1 2 3 25 25 H 1.08998 * 109.46724 * 60.00146 * 1 2 3 26 26 H 1.08999 * 109.46983 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47122 * 239.99663 * 2 1 3 28 28 H 1.08998 * 109.46724 * 119.99854 * 2 1 3 29 29 H 1.09001 * 109.46889 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.47065 * 300.00108 * 7 6 4 31 31 H 1.08993 * 109.47130 * 59.99967 * 7 6 4 32 32 H 1.09001 * 109.46872 * 300.00138 * 8 6 4 33 33 H 1.08997 * 109.47041 * 59.99620 * 8 6 4 34 34 H 1.08994 * 109.47050 * 179.97438 * 8 6 4 35 35 H 1.09002 * 109.46938 * 300.00525 * 9 6 4 36 36 H 1.09001 * 109.47031 * 59.99723 * 9 6 4 37 37 H 0.96999 * 120.00267 * 174.92653 * 16 15 13 38 38 H 1.08999 * 115.55370 * 328.93266 * 21 12 10 39 39 H 1.09002 * 117.50029 * 0.02562 * 22 21 12 40 40 H 1.09000 * 117.49716 * 145.02086 * 22 21 12 41 41 H 1.09004 * 117.49939 * 252.50681 * 23 22 21 42 42 H 1.09001 * 117.51649 * 107.48166 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 6 3.4487 3.6850 1.2486 8 6 3.4498 3.6837 -1.2499 9 6 5.4487 2.8573 0.0001 10 6 6.0247 4.2498 0.0002 11 8 5.2859 5.2117 0.0006 12 7 7.3609 4.4264 0.0009 13 6 7.8849 5.6933 0.0015 14 1 8.7102 5.9366 -0.6513 15 6 7.3542 6.6643 0.8418 16 7 6.6173 6.3111 1.8709 17 14 7.6882 8.4717 0.5087 18 1 6.6292 9.0154 -0.3790 19 1 7.6906 9.2193 1.7918 20 1 9.0104 8.6172 -0.1515 21 6 8.2533 3.2646 0.0020 22 6 9.7581 3.5297 0.0790 23 6 9.1323 3.0478 -1.2313 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8650 4.6924 1.2480 30 1 2.3602 3.7420 1.2481 31 1 3.7842 3.1533 2.1390 32 1 3.7861 3.1510 -2.1394 33 1 2.3614 3.7407 -1.2504 34 1 3.8661 4.6910 -1.2500 35 1 5.7846 2.3254 0.8903 36 1 5.7847 2.3247 -0.8896 37 1 6.3080 6.9823 2.4992 38 1 7.8713 2.3789 0.5098 39 1 10.0842 4.5686 0.1292 40 1 10.3665 2.8185 0.6377 41 1 9.3291 2.0195 -1.5347 42 1 9.0464 3.7694 -2.0437 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577136166.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:39 Heat of formation + Delta-G solvation = -105.813431 kcal Electronic energy + Delta-G solvation = -23708.796279 eV Core-core repulsion = 20268.821993 eV Total energy + Delta-G solvation = -3439.974286 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.91808 -40.47032 -38.30686 -37.64925 -36.19662 -34.54988 -32.87239 -32.49750 -29.47711 -28.23911 -26.52567 -25.47192 -23.49775 -23.12799 -22.77893 -21.64209 -20.30719 -18.52831 -18.07998 -17.77376 -17.57543 -17.18819 -16.39718 -16.07831 -15.80055 -15.39165 -15.17256 -14.82538 -14.80121 -14.20483 -14.08881 -13.67060 -13.58172 -13.25227 -13.17223 -12.88772 -12.83498 -12.78661 -12.67173 -12.49071 -12.30932 -12.06278 -12.02192 -11.90252 -11.85414 -11.55641 -11.49586 -11.32898 -11.15705 -10.66209 -9.70570 -8.88272 -8.13506 -5.91805 1.11739 1.40752 1.48593 1.52670 1.61160 2.29230 2.44568 3.12611 3.16105 3.38383 3.51298 3.81840 3.87365 4.02206 4.09601 4.10871 4.13839 4.23048 4.32862 4.35635 4.50598 4.64063 4.72070 4.81695 4.83602 4.89434 4.91357 4.93350 4.94721 4.99507 5.09426 5.13835 5.28951 5.40860 5.47238 5.49599 5.54705 5.61414 6.26600 6.68804 7.10008 7.25274 7.76455 8.42114 8.94386 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021404 B = 0.005158 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.865206 B = 5427.508622 C = 6343.004473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 O -0.355 6.355 4 C 0.482 3.518 5 O -0.533 6.533 6 C -0.028 4.028 7 C -0.138 4.138 8 C -0.140 4.140 9 C -0.102 4.102 10 C 0.479 3.521 11 O -0.555 6.555 12 N -0.443 5.443 13 C -0.356 4.356 14 H 0.075 0.925 15 C 0.030 3.970 16 N -0.866 5.866 17 Si 0.967 3.033 18 H -0.289 1.289 19 H -0.284 1.284 20 H -0.260 1.260 21 C 0.041 3.959 22 C -0.168 4.168 23 C -0.181 4.181 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.103 0.897 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.042 0.958 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.260 0.740 38 H 0.116 0.884 39 H 0.084 0.916 40 H 0.114 0.886 41 H 0.119 0.881 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.801 -11.359 -3.672 13.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.025 4.025 3 O -0.271 6.271 4 C 0.326 3.674 5 O -0.423 6.423 6 C -0.030 4.030 7 C -0.195 4.195 8 C -0.197 4.197 9 C -0.142 4.142 10 C 0.268 3.732 11 O -0.436 6.436 12 N -0.164 5.164 13 C -0.483 4.483 14 H 0.092 0.908 15 C -0.177 4.177 16 N -0.501 5.501 17 Si 0.793 3.207 18 H -0.215 1.215 19 H -0.210 1.210 20 H -0.184 1.184 21 C -0.064 4.064 22 C -0.205 4.205 23 C -0.219 4.219 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.121 0.879 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.069 0.931 38 H 0.133 0.867 39 H 0.102 0.898 40 H 0.132 0.868 41 H 0.138 0.862 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.146 -11.108 -3.539 13.674 hybrid contribution 0.396 0.746 0.240 0.878 sum -6.750 -10.362 -3.299 12.799 Atomic orbital electron populations 1.21822 0.90196 1.04442 1.03699 1.23363 0.97292 0.79219 1.02627 1.86523 1.23412 1.33807 1.83379 1.23775 0.80877 0.91994 0.70749 1.90600 1.61074 1.43701 1.46903 1.20117 0.94098 0.88381 1.00403 1.21937 1.01581 1.02307 0.93721 1.21973 1.02027 1.02018 0.93693 1.21367 0.93330 0.95818 1.03693 1.20141 0.82658 0.90122 0.80290 1.90361 1.57858 1.43595 1.51772 1.42963 1.03419 1.04058 1.65935 1.19041 1.19896 0.86492 1.22888 0.90781 1.25921 0.95252 1.02939 0.93542 1.69930 1.33821 1.35013 1.11286 0.85360 0.78385 0.79608 0.77348 1.21542 1.20951 1.18441 1.21986 0.89862 0.91675 1.02888 1.23092 0.94329 1.02478 1.00645 1.23306 1.04383 1.02553 0.91686 0.91442 0.91226 0.87875 0.91079 0.91403 0.90060 0.90831 0.93863 0.92502 0.90627 0.90199 0.90404 0.89068 0.93122 0.86683 0.89756 0.86791 0.86248 0.90408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 10.29 71.99 0.74 -1.33 16 2 C 0.05 1.03 6.19 71.99 0.45 1.48 16 3 O -0.35 -10.12 10.02 -51.37 -0.52 -10.64 16 4 C 0.48 16.15 6.55 71.24 0.47 16.62 16 5 O -0.53 -19.53 15.73 21.95 0.35 -19.18 16 6 C -0.03 -1.04 0.71 -52.93 -0.04 -1.07 16 7 C -0.14 -5.26 8.11 71.98 0.58 -4.68 16 8 C -0.14 -4.85 8.11 71.98 0.58 -4.27 16 9 C -0.10 -4.07 2.68 29.85 0.08 -3.99 16 10 C 0.48 23.50 6.38 87.65 0.56 24.06 16 11 O -0.55 -30.24 9.11 -3.06 -0.03 -30.27 16 12 N -0.44 -21.95 2.83 -613.14 -1.74 -23.69 16 13 C -0.36 -19.21 7.92 84.04 0.67 -18.54 16 14 H 0.07 3.92 7.26 -2.91 -0.02 3.90 16 15 C 0.03 1.67 4.38 84.93 0.37 2.05 16 16 N -0.87 -50.55 11.74 21.66 0.25 -50.29 16 17 Si 0.97 44.77 29.59 68.60 2.03 46.80 16 18 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 21 C 0.04 1.64 5.87 44.99 0.26 1.90 16 22 C -0.17 -5.88 9.80 30.59 0.30 -5.58 16 23 C -0.18 -5.91 10.36 30.59 0.32 -5.59 16 24 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.07 1.47 8.13 -2.39 -0.02 1.45 16 28 H 0.07 1.45 8.13 -2.39 -0.02 1.43 16 29 H 0.08 3.78 5.51 -2.39 -0.01 3.77 16 30 H 0.07 2.41 8.11 -2.39 -0.02 2.39 16 31 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.07 2.27 8.11 -2.39 -0.02 2.25 16 34 H 0.08 3.31 5.51 -2.39 -0.01 3.30 16 35 H 0.08 3.13 7.52 -2.39 -0.02 3.11 16 36 H 0.09 3.41 8.07 -2.39 -0.02 3.39 16 37 H 0.26 14.66 8.32 -92.71 -0.77 13.89 16 38 H 0.12 4.23 6.96 -2.39 -0.02 4.21 16 39 H 0.08 3.35 6.72 -2.39 -0.02 3.33 16 40 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 41 H 0.12 3.08 8.14 -2.38 -0.02 3.06 16 42 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -66.97 341.19 6.69 -60.28 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 1.00 Total: 25.93 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 5.34 Total: 1.05 kcal Atomic # 7 Polarization: -72.49 SS G_CDS: -1.48 Total: -73.98 kcal Atomic # 8 Polarization: -59.89 SS G_CDS: -0.20 Total: -60.09 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -66.97 6.69 -60.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577136166.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.529 kcal (2) G-P(sol) polarization free energy of solvation -66.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds