Wall clock time and date at job start Tue Mar 31 2020 06:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46777 * 2 1 4 4 C 1.34224 * 117.00077 * 179.97438 * 3 2 1 5 5 O 1.20833 * 120.00103 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00302 * 180.02562 * 4 3 2 7 7 C 1.50702 * 110.02099 * 58.60515 * 6 4 3 8 8 O 1.21275 * 120.00137 * 120.70397 * 7 6 4 9 9 N 1.34780 * 119.99713 * 300.70668 * 7 6 4 10 10 C 1.46492 * 119.99832 * 179.97438 * 9 7 6 11 11 C 1.53007 * 109.47395 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47445 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99528 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99748 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00122 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99718 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47256 * 90.00208 * 16 14 12 18 18 H 1.48500 * 109.47129 * 210.00243 * 16 14 12 19 19 H 1.48504 * 109.47242 * 330.00327 * 16 14 12 20 20 C 1.54268 * 110.02916 * 297.16296 * 6 4 3 21 21 C 1.54891 * 104.19958 * 217.10481 * 20 6 4 22 22 C 1.54893 * 102.74410 * 37.94045 * 21 20 6 23 23 C 1.53871 * 110.03485 * 179.97438 * 6 4 3 24 24 H 1.09000 * 109.47486 * 299.99948 * 1 2 3 25 25 H 1.09001 * 109.47362 * 60.00671 * 1 2 3 26 26 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47486 * 240.00051 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99329 * 2 1 3 29 29 H 0.97003 * 120.00039 * 359.97438 * 9 7 6 30 30 H 1.08993 * 109.47470 * 299.99786 * 10 9 7 31 31 H 1.09007 * 109.46989 * 59.99962 * 10 9 7 32 32 H 1.09001 * 109.46634 * 300.00658 * 11 10 9 33 33 H 1.08996 * 109.46435 * 59.99551 * 11 10 9 34 34 H 0.97006 * 119.99718 * 179.97438 * 15 14 12 35 35 H 1.09000 * 110.48909 * 335.78532 * 20 6 4 36 36 H 1.09000 * 110.48411 * 98.42808 * 20 6 4 37 37 H 1.09006 * 110.75501 * 279.63149 * 21 20 6 38 38 H 1.08992 * 110.91835 * 156.33189 * 21 20 6 39 39 H 1.09007 * 110.48596 * 203.37826 * 22 21 20 40 40 H 1.08996 * 110.48183 * 80.74129 * 22 21 20 41 41 H 1.08994 * 110.03235 * 238.56615 * 23 6 4 42 42 H 1.08999 * 110.03431 * 359.97438 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9205 2.9376 0.0012 7 6 3.4357 3.6959 1.2098 8 8 4.2337 4.1354 2.0103 9 7 2.1151 3.8856 1.4012 10 6 1.6437 4.6223 2.5764 11 6 0.1156 4.6950 2.5538 12 6 -0.3693 5.4534 3.7624 13 1 0.3414 5.8447 4.4752 14 6 -1.7201 5.6484 3.9575 15 7 -2.5854 5.1731 3.0887 16 14 -2.3212 6.5891 5.4553 17 1 -2.4123 8.0347 5.1283 18 1 -3.6610 6.0857 5.8512 19 1 -1.3679 6.3946 6.5774 20 6 3.5115 3.6791 -1.2883 21 6 4.7586 4.5218 -1.6538 22 6 5.9294 3.5762 -1.2874 23 6 5.4579 2.8722 0.0023 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.4768 3.5344 0.7608 30 1 1.9700 4.1099 3.4814 31 1 2.0554 5.6315 2.5618 32 1 -0.2103 5.2076 1.6487 33 1 -0.2963 3.6860 2.5680 34 1 -3.5359 5.3101 3.2263 35 1 3.2859 2.9674 -2.0825 36 1 2.6551 4.3267 -1.1006 37 1 4.7972 5.4334 -1.0574 38 1 4.7708 4.7574 -2.7179 39 1 6.8376 4.1488 -1.0990 40 1 6.0943 2.8480 -2.0814 41 1 5.8529 3.3897 0.8764 42 1 5.7874 1.8332 0.0029 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581885301.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:17 Heat of formation + Delta-G solvation = -150.497036 kcal Electronic energy + Delta-G solvation = -23273.600259 eV Core-core repulsion = 19831.688346 eV Total energy + Delta-G solvation = -3441.911913 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.28797 -39.39677 -37.37844 -36.40817 -34.93542 -32.92762 -31.91088 -30.49247 -29.17116 -28.70844 -24.86761 -23.97908 -22.39901 -21.87851 -21.04979 -20.57806 -19.31955 -18.24336 -16.98394 -16.77750 -16.42591 -16.07978 -15.52868 -14.89035 -14.64350 -14.49486 -14.11857 -14.02566 -13.53122 -13.28446 -12.94348 -12.88390 -12.34274 -12.24258 -12.00502 -11.78252 -11.52582 -11.33604 -11.28120 -11.25522 -11.18795 -11.05014 -10.69778 -10.63503 -10.61988 -10.45080 -10.34401 -9.81106 -9.48565 -9.21946 -8.58223 -8.38273 -6.10542 -4.13329 1.95004 2.35084 3.00671 3.28473 3.34682 3.38303 3.54016 4.10816 4.34751 4.40431 4.61141 4.86336 4.87551 4.90752 5.06949 5.17723 5.23150 5.26668 5.26766 5.36656 5.50934 5.60941 5.67034 5.75825 5.79019 5.89567 5.98218 6.02448 6.13516 6.26478 6.30427 6.31259 6.37519 6.70513 6.85504 7.50069 7.58163 7.60316 7.86926 7.93666 8.25112 8.52194 8.92392 9.51533 11.00939 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.017440 B = 0.004552 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.094388 B = 6149.163844 C = 7160.536272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.065 3.935 3 O -0.350 6.350 4 C 0.480 3.520 5 O -0.499 6.499 6 C -0.077 4.077 7 C 0.520 3.480 8 O -0.534 6.534 9 N -0.710 5.710 10 C 0.120 3.880 11 C 0.014 3.986 12 C -0.522 4.522 13 H 0.059 0.941 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.896 3.104 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.107 4.107 21 C -0.124 4.124 22 C -0.120 4.120 23 C -0.117 4.117 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.404 0.596 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.262 0.738 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.100 0.900 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.062 -7.498 -12.065 17.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.009 4.009 3 O -0.267 6.267 4 C 0.322 3.678 5 O -0.386 6.386 6 C -0.082 4.082 7 C 0.303 3.697 8 O -0.412 6.412 9 N -0.360 5.360 10 C -0.002 4.002 11 C -0.024 4.024 12 C -0.560 4.560 13 H 0.077 0.923 14 C -0.142 4.142 15 N -0.532 5.532 16 Si 0.724 3.276 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.145 4.145 21 C -0.161 4.161 22 C -0.158 4.158 23 C -0.154 4.154 24 H 0.094 0.906 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.239 0.761 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.119 0.881 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.594 -7.513 -11.490 17.340 hybrid contribution -0.863 0.060 0.514 1.007 sum 9.731 -7.453 -10.976 16.453 Atomic orbital electron populations 1.21841 0.92013 1.03027 1.04417 1.23096 0.95847 0.79532 1.02415 1.86494 1.23653 1.33050 1.83486 1.23078 0.80957 0.91640 0.72147 1.90624 1.60369 1.42422 1.45202 1.21518 0.98987 0.89724 0.97979 1.19699 0.83433 0.80736 0.85841 1.90660 1.54408 1.50891 1.45207 1.46350 1.06111 1.55807 1.27690 1.21796 0.98421 0.94672 0.85263 1.19314 0.86987 0.97945 0.98114 1.21041 0.91955 1.35228 1.07798 0.92275 1.24976 0.96834 0.95713 0.96645 1.69954 1.01970 1.45611 1.35674 0.86528 0.78111 0.80037 0.82972 1.20555 1.21177 1.19747 1.22436 0.99792 0.98787 0.93441 1.22529 0.93536 0.98461 1.01611 1.22363 0.98378 0.98190 0.96864 1.22339 0.88856 1.03739 1.00478 0.90598 0.91254 0.90265 0.91288 0.91163 0.76085 0.92484 0.92300 0.95871 0.95857 0.92863 0.90136 0.89497 0.90639 0.90655 0.90875 0.91469 0.88143 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 10.29 37.16 0.38 -1.16 16 2 C 0.06 0.73 6.19 37.16 0.23 0.96 16 3 O -0.35 -4.78 8.62 -39.24 -0.34 -5.12 16 4 C 0.48 7.03 6.42 36.00 0.23 7.26 16 5 O -0.50 -8.04 14.96 -18.76 -0.28 -8.32 16 6 C -0.08 -1.09 0.72 -155.70 -0.11 -1.20 16 7 C 0.52 9.07 6.43 -10.98 -0.07 9.00 16 8 O -0.53 -10.92 15.21 5.56 0.08 -10.84 16 9 N -0.71 -12.66 5.01 -60.30 -0.30 -12.96 16 10 C 0.12 2.55 5.61 -4.04 -0.02 2.52 16 11 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 12 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 13 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 16 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 C -0.11 -1.19 5.84 -25.07 -0.15 -1.34 16 21 C -0.12 -1.23 6.91 -24.74 -0.17 -1.40 16 22 C -0.12 -1.22 6.83 -25.04 -0.17 -1.39 16 23 C -0.12 -1.53 6.00 -25.59 -0.15 -1.69 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.70 8.13 -51.93 -0.42 0.27 16 28 H 0.07 0.82 8.13 -51.93 -0.42 0.39 16 29 H 0.40 6.59 6.95 -40.82 -0.28 6.31 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.08 0.78 7.85 -51.93 -0.41 0.38 16 36 H 0.09 0.99 7.45 -51.93 -0.39 0.60 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.10 1.48 6.39 -51.93 -0.33 1.15 16 42 H 0.09 1.23 6.40 -51.93 -0.33 0.90 16 LS Contribution 345.77 15.07 5.21 5.21 Total: -1.00 -31.35 345.77 -7.25 -38.60 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -6.78 Total: 3.50 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -0.56 Total: -1.26 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.43 Total: -37.91 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.53 Total: -24.27 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.35 -7.25 -38.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581885301.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.897 kcal (2) G-P(sol) polarization free energy of solvation -31.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds