Wall clock time and date at job start Tue Mar 31 2020 06:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45205 * 109.46921 * 2 1 4 4 C 1.34223 * 116.99911 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00418 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00104 * 180.02562 * 4 3 2 7 7 C 1.53004 * 109.47242 * 180.02562 * 6 4 3 8 8 N 1.46497 * 109.47030 * 180.02562 * 7 6 4 9 9 C 1.34773 * 120.00037 * 269.99774 * 8 7 6 10 10 O 1.21286 * 120.00281 * 185.95525 * 9 8 7 11 11 C 1.50709 * 120.00111 * 5.95495 * 9 8 7 12 12 C 1.52992 * 109.47181 * 180.85382 * 11 9 8 13 13 C 1.50699 * 109.47172 * 180.02562 * 12 11 9 14 14 H 1.08003 * 120.00014 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00437 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99707 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00052 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47637 * 89.99762 * 17 15 13 19 19 H 1.48505 * 109.46869 * 209.99854 * 17 15 13 20 20 H 1.48497 * 109.47309 * 329.99305 * 17 15 13 21 21 C 1.46502 * 120.00216 * 89.99895 * 8 7 6 22 22 C 1.52997 * 117.50159 * 196.36869 * 21 8 7 23 23 C 1.53002 * 117.49878 * 127.70495 * 21 8 7 24 24 H 1.09003 * 109.47331 * 300.00129 * 1 2 3 25 25 H 1.08999 * 109.47095 * 59.99803 * 1 2 3 26 26 H 1.08998 * 109.47399 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47033 * 240.00276 * 2 1 3 28 28 H 1.09004 * 109.47098 * 119.99740 * 2 1 3 29 29 H 1.08994 * 109.47205 * 60.00142 * 6 4 3 30 30 H 1.09001 * 109.46867 * 300.00271 * 6 4 3 31 31 H 1.09003 * 109.46791 * 59.99896 * 7 6 4 32 32 H 1.09005 * 109.46807 * 300.00006 * 7 6 4 33 33 H 1.09002 * 109.47084 * 300.86094 * 11 9 8 34 34 H 1.09006 * 109.46706 * 60.85821 * 11 9 8 35 35 H 1.09002 * 109.47693 * 300.00339 * 12 11 9 36 36 H 1.09000 * 109.47271 * 60.00292 * 12 11 9 37 37 H 0.97001 * 120.00580 * 179.97438 * 16 15 13 38 38 H 1.09006 * 115.54674 * 342.03810 * 21 8 7 39 39 H 1.09004 * 117.49626 * 359.97438 * 22 21 8 40 40 H 1.08993 * 117.50128 * 145.02169 * 22 21 8 41 41 H 1.09000 * 117.49806 * 214.98044 * 23 21 8 42 42 H 1.08999 * 117.49788 * 359.97438 * 23 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9206 2.9375 0.0012 7 6 5.4486 2.8575 0.0010 8 7 6.0085 4.2112 0.0023 9 6 6.2660 4.8350 -1.1643 10 8 6.8284 5.9096 -1.1663 11 6 5.8552 4.1973 -2.4666 12 6 6.2805 5.0947 -3.6304 13 6 5.8692 4.4573 -4.9326 14 1 5.3554 3.5072 -4.9302 15 6 6.1487 5.0868 -6.1270 16 7 6.7738 6.2438 -6.1299 17 14 5.6382 4.2970 -7.7409 18 1 4.2730 4.7535 -8.1055 19 1 6.5931 4.6900 -8.8082 20 1 5.6429 2.8195 -7.5923 21 6 6.2884 4.8870 1.2716 22 6 6.5010 6.4017 1.2337 23 6 7.6904 5.4672 1.4688 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.5844 3.4694 0.8911 30 1 3.5849 3.4699 -0.8888 31 1 5.7844 2.3257 -0.8892 32 1 5.7845 2.3249 0.8908 33 1 6.3375 3.2244 -2.5628 34 1 4.7728 4.0695 -2.4830 35 1 5.7983 6.0675 -3.5343 36 1 7.3628 5.2225 -3.6140 37 1 6.9709 6.6866 -6.9701 38 1 5.7884 4.4707 2.1461 39 1 6.4329 6.8954 0.2642 40 1 6.1412 6.9818 2.0834 41 1 8.1125 5.4329 2.4732 42 1 8.4045 5.3457 0.6544 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589708766.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:07 Heat of formation + Delta-G solvation = -99.436075 kcal Electronic energy + Delta-G solvation = -22455.840164 eV Core-core repulsion = 19016.142421 eV Total energy + Delta-G solvation = -3439.697743 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.72021 -39.97138 -36.98488 -36.25408 -34.98040 -33.35636 -32.11961 -30.89352 -30.43326 -25.97974 -24.99877 -23.15330 -22.97553 -22.15882 -21.00823 -20.76880 -18.61204 -17.89259 -17.01580 -16.87767 -16.40561 -16.07361 -15.69993 -15.01379 -14.73882 -14.42688 -14.19300 -13.67338 -13.46715 -13.34239 -13.12343 -12.94179 -12.55681 -12.22576 -12.17524 -12.14756 -11.82422 -11.44294 -11.18779 -11.12583 -10.96890 -10.82843 -10.75368 -10.63259 -10.59332 -10.20975 -9.94113 -9.60467 -9.13025 -8.83784 -8.33817 -8.23762 -5.96756 -4.01078 2.05598 2.37620 3.04242 3.18463 3.33120 3.39545 3.42328 4.07469 4.46007 4.50792 4.65163 4.69986 4.72247 4.76596 4.95301 4.99661 5.02130 5.23916 5.26130 5.37825 5.38449 5.46817 5.48849 5.51493 5.69244 5.74033 5.79395 5.88815 6.11975 6.18458 6.27133 6.27821 6.56193 6.84220 6.94335 7.56452 7.66007 7.73218 7.83924 8.05449 8.37327 8.67909 9.06915 9.62624 11.14144 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.009639 B = 0.005162 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.192172 B = 5422.499626 C = 7963.048451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.359 6.359 4 C 0.470 3.530 5 O -0.509 6.509 6 C -0.138 4.138 7 C 0.129 3.871 8 N -0.598 5.598 9 C 0.513 3.487 10 O -0.519 6.519 11 C -0.131 4.131 12 C 0.038 3.962 13 C -0.527 4.527 14 H 0.055 0.945 15 C 0.059 3.941 16 N -0.889 5.889 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.067 3.933 22 C -0.192 4.192 23 C -0.188 4.188 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.261 0.739 38 H 0.122 0.878 39 H 0.139 0.861 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.374 -9.605 17.398 21.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.276 6.276 4 C 0.312 3.688 5 O -0.396 6.396 6 C -0.177 4.177 7 C 0.005 3.995 8 N -0.331 5.331 9 C 0.304 3.696 10 O -0.394 6.394 11 C -0.171 4.171 12 C 0.001 3.999 13 C -0.565 4.565 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.528 5.528 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.037 4.037 22 C -0.230 4.230 23 C -0.227 4.227 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.127 0.873 30 H 0.133 0.867 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.140 0.860 39 H 0.157 0.843 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.797 -9.205 17.248 21.439 hybrid contribution -0.342 -0.668 -0.812 1.106 sum -9.139 -9.873 16.436 21.240 Atomic orbital electron populations 1.21812 0.92633 1.02947 1.03639 1.23037 0.95393 0.80173 1.02677 1.86519 1.24629 1.32469 1.83959 1.23599 0.80571 0.92545 0.72065 1.90684 1.60323 1.43246 1.45380 1.21970 0.97553 0.91227 1.06932 1.21261 0.89730 0.83278 1.05192 1.47561 1.64433 1.16004 1.05084 1.21650 0.77456 0.85233 0.85251 1.90516 1.40452 1.21757 1.86682 1.21986 1.01583 1.01486 0.92060 1.18899 0.97585 0.94164 0.89300 1.21203 1.38102 1.06115 0.91112 0.92670 1.25007 0.95171 0.94915 0.99174 1.69991 1.40738 1.15479 1.26575 0.86607 0.78348 0.79604 0.83504 1.20664 1.21201 1.19891 1.21616 1.00034 0.94678 0.87374 1.23847 1.01302 0.92176 1.05631 1.23234 0.92159 1.05017 1.02263 0.91539 0.91271 0.90271 0.91008 0.91284 0.87338 0.86662 0.88577 0.89513 0.90167 0.90322 0.95755 0.95806 0.92945 0.86039 0.84316 0.89684 0.89132 0.88389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.29 37.16 0.38 -0.60 16 2 C 0.06 0.54 6.19 37.16 0.23 0.77 16 3 O -0.36 -3.94 10.22 -39.24 -0.40 -4.34 16 4 C 0.47 5.48 7.96 36.01 0.29 5.77 16 5 O -0.51 -7.10 15.73 -18.75 -0.29 -7.40 16 6 C -0.14 -1.43 6.14 -27.88 -0.17 -1.60 16 7 C 0.13 1.52 4.50 -4.04 -0.02 1.51 16 8 N -0.60 -8.57 2.84 -166.10 -0.47 -9.05 16 9 C 0.51 9.64 7.46 -10.98 -0.08 9.55 16 10 O -0.52 -11.46 11.73 5.55 0.07 -11.39 16 11 C -0.13 -2.64 4.36 -27.88 -0.12 -2.76 16 12 C 0.04 1.01 4.26 -27.89 -0.12 0.89 16 13 C -0.53 -14.85 9.11 -34.44 -0.31 -15.17 16 14 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 17 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 C 0.07 0.86 6.60 -67.93 -0.45 0.41 16 22 C -0.19 -2.71 9.63 -26.69 -0.26 -2.96 16 23 C -0.19 -2.53 9.88 -26.69 -0.26 -2.80 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 28 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 29 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.12 1.26 6.92 -51.93 -0.36 0.90 16 31 H 0.10 1.23 6.42 -51.93 -0.33 0.90 16 32 H 0.09 0.90 8.03 -51.93 -0.42 0.48 16 33 H 0.08 1.51 7.18 -51.93 -0.37 1.14 16 34 H 0.08 1.43 6.92 -51.93 -0.36 1.07 16 35 H 0.02 0.70 8.09 -51.93 -0.42 0.28 16 36 H 0.02 0.69 8.11 -51.93 -0.42 0.27 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.14 2.49 5.22 -52.12 -0.27 2.22 16 40 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.10 1.59 7.60 -51.93 -0.39 1.20 16 LS Contribution 350.31 15.07 5.28 5.28 Total: -1.00 -33.85 350.31 -7.80 -41.65 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.70 Total: 0.51 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -0.99 Total: -5.37 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.26 Total: -35.57 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.63 Total: -23.13 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.85 -7.80 -41.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589708766.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.790 kcal (2) G-P(sol) polarization free energy of solvation -33.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds