Wall clock time and date at job start Tue Mar 31 2020 06:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.70504 * 2 1 4 4 C 1.52765 * 109.51091 * 239.87922 * 2 1 3 5 5 C 1.53041 * 109.38442 * 185.70898 * 4 2 1 6 6 C 1.53042 * 109.53895 * 61.23489 * 5 4 2 7 7 H 1.09007 * 109.51857 * 58.60435 * 6 5 4 8 8 C 1.50699 * 109.49914 * 178.68441 * 6 5 4 9 9 O 1.20827 * 119.99756 * 359.83777 * 8 6 5 10 10 O 1.34221 * 120.00372 * 179.84410 * 8 6 5 11 11 C 1.53188 * 109.31531 * 298.63899 * 6 5 4 12 12 N 1.46924 * 108.77968 * 54.63408 * 11 6 5 13 13 C 1.34769 * 120.63415 * 126.36902 * 12 11 6 14 14 O 1.21275 * 120.00195 * 174.20278 * 13 12 11 15 15 C 1.50697 * 120.00041 * 354.20060 * 13 12 11 16 16 C 1.53000 * 109.47476 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.47466 * 180.02562 * 16 15 13 18 18 C 1.50699 * 109.47258 * 179.97438 * 17 16 15 19 19 H 1.07996 * 119.99857 * 359.72767 * 18 17 16 20 20 C 1.37879 * 119.99750 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99701 * 180.02562 * 20 18 17 22 22 Si 1.86794 * 120.00283 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47190 * 89.99961 * 22 20 18 24 24 H 1.48503 * 109.47177 * 210.00140 * 22 20 18 25 25 H 1.48503 * 109.47352 * 329.99823 * 22 20 18 26 26 H 1.09004 * 109.46751 * 305.45334 * 1 2 3 27 27 H 1.09003 * 109.47019 * 65.44530 * 1 2 3 28 28 H 1.09000 * 109.47414 * 185.44957 * 1 2 3 29 29 H 1.08996 * 109.56100 * 65.66948 * 4 2 1 30 30 H 1.08997 * 109.38271 * 305.63127 * 4 2 1 31 31 H 1.09004 * 109.45735 * 301.21776 * 5 4 2 32 32 H 1.08995 * 109.44615 * 181.25240 * 5 4 2 33 33 H 0.96706 * 117.00524 * 179.97438 * 10 8 6 34 34 H 1.09001 * 109.58282 * 294.84476 * 11 6 5 35 35 H 1.09001 * 109.70069 * 174.49348 * 11 6 5 36 36 H 1.09000 * 109.47159 * 59.99923 * 15 13 12 37 37 H 1.09008 * 109.47410 * 299.99896 * 15 13 12 38 38 H 1.09000 * 109.47237 * 59.99668 * 16 15 13 39 39 H 1.09004 * 109.46548 * 299.99682 * 16 15 13 40 40 H 1.09000 * 109.47203 * 59.99599 * 17 16 15 41 41 H 1.09003 * 109.47264 * 300.00297 * 17 16 15 42 42 H 0.97001 * 119.99598 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0402 -0.7226 -1.2455 5 6 3.5638 -0.8463 -1.1726 6 6 3.9523 -1.6687 0.0583 7 1 3.4908 -2.6544 -0.0018 8 6 5.4510 -1.8172 0.1115 9 8 6.1383 -1.3194 -0.7485 10 8 6.0223 -2.5028 1.1141 11 6 3.4644 -0.9519 1.3212 12 7 2.0225 -0.6995 1.1946 13 6 1.1673 -1.1068 2.1533 14 8 -0.0047 -0.8016 2.0899 15 6 1.6674 -1.9414 3.3040 16 6 0.5032 -2.2666 4.2420 17 6 1.0110 -3.1135 5.4107 18 6 -0.1355 -3.4332 6.3349 19 1 -1.1264 -3.0651 6.1134 20 6 0.0815 -4.1914 7.4659 21 7 -0.9192 -4.4708 8.2722 22 14 1.7968 -4.8216 7.8529 23 1 2.5146 -3.8236 8.6860 24 1 1.6972 -6.1049 8.5937 25 1 2.5422 -5.0375 6.5869 26 1 -0.3633 0.5961 0.8372 27 1 -0.3633 0.4271 -0.9348 28 1 -0.3634 -1.0230 0.0976 29 1 1.7632 -0.1567 -2.1349 30 1 1.5964 -1.7169 -1.2941 31 1 4.0058 0.1475 -1.0996 32 1 3.9311 -1.3419 -2.0712 33 1 6.9869 -2.5713 1.1054 34 1 3.9929 -0.0049 1.4310 35 1 3.6506 -1.5776 2.1940 36 1 2.4306 -1.3871 3.8502 37 1 2.0952 -2.8683 2.9217 38 1 -0.2597 -2.8211 3.6956 39 1 0.0751 -1.3400 4.6244 40 1 1.7738 -2.5586 5.9570 41 1 1.4396 -4.0401 5.0287 42 1 -0.7665 -5.0039 9.0681 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594468027.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:35 Heat of formation + Delta-G solvation = -136.075938 kcal Electronic energy + Delta-G solvation = -22886.634115 eV Core-core repulsion = 19445.347548 eV Total energy + Delta-G solvation = -3441.286567 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.15569 -40.15097 -37.55393 -36.46780 -34.57743 -33.26330 -33.12321 -31.89002 -28.76090 -27.84916 -25.33783 -24.08344 -23.58711 -21.81935 -20.64075 -19.98154 -19.00474 -18.40785 -17.23426 -16.86460 -16.51225 -16.26095 -15.68247 -15.55814 -14.62317 -14.43319 -14.21056 -14.01790 -13.86655 -13.41181 -12.97893 -12.88801 -12.62190 -12.41060 -12.31139 -11.95320 -11.90318 -11.66812 -11.44073 -11.29920 -11.21048 -11.15933 -10.93324 -10.83696 -10.77882 -9.93630 -9.73093 -9.66613 -9.17065 -8.89843 -8.72716 -8.50482 -6.00272 -3.97995 1.76722 2.53145 2.77396 2.93628 3.31861 3.39108 3.41853 4.10525 4.30996 4.40860 4.47551 4.56274 4.78274 4.85544 4.99578 5.03039 5.11374 5.30734 5.33172 5.35800 5.44226 5.53180 5.54421 5.57223 5.62118 5.71621 5.84740 6.07249 6.11092 6.14155 6.29312 6.55966 6.60767 6.69921 6.92731 7.32115 7.40377 7.46205 7.49913 7.83205 8.32331 8.59697 9.06565 9.61883 11.13463 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.017515 B = 0.004178 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.249178 B = 6700.555156 C = 8150.189359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.140 3.860 3 H 0.070 0.930 4 C -0.131 4.131 5 C -0.104 4.104 6 C -0.098 4.098 7 H 0.117 0.883 8 C 0.487 3.513 9 O -0.513 6.513 10 O -0.511 6.511 11 C 0.120 3.880 12 N -0.619 5.619 13 C 0.518 3.482 14 O -0.520 6.520 15 C -0.145 4.145 16 C -0.086 4.086 17 C -0.014 4.014 18 C -0.519 4.519 19 H 0.072 0.928 20 C 0.064 3.936 21 N -0.905 5.905 22 Si 0.881 3.119 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.265 1.265 26 H 0.081 0.919 27 H 0.042 0.958 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.412 0.588 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.010 0.990 41 H 0.015 0.985 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.634 7.389 -20.035 25.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.038 3.962 3 H 0.088 0.912 4 C -0.169 4.169 5 C -0.141 4.141 6 C -0.118 4.118 7 H 0.135 0.865 8 C 0.329 3.671 9 O -0.401 6.401 10 O -0.323 6.323 11 C -0.004 4.004 12 N -0.354 5.354 13 C 0.308 3.692 14 O -0.395 6.395 15 C -0.185 4.185 16 C -0.125 4.125 17 C -0.052 4.052 18 C -0.557 4.557 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.544 5.544 22 Si 0.708 3.292 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.190 1.190 26 H 0.100 0.900 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.271 0.729 34 H 0.092 0.908 35 H 0.123 0.877 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.029 0.971 41 H 0.033 0.967 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.681 7.633 -20.118 24.976 hybrid contribution 1.776 -0.530 0.259 1.872 sum 14.457 7.103 -19.859 25.570 Atomic orbital electron populations 1.22208 0.92205 1.04070 1.01114 1.21210 0.96206 0.95053 0.83780 0.91242 1.21980 0.94626 1.02113 0.98224 1.21449 0.96147 1.00533 0.96000 1.21499 0.87685 1.03563 0.99055 0.86532 1.23291 0.91736 0.73983 0.78104 1.90729 1.64980 1.45629 1.38783 1.84569 1.29505 1.69128 1.49111 1.21583 0.81490 1.00633 0.96729 1.48242 1.06489 1.59362 1.21349 1.21132 0.85833 0.79320 0.82936 1.90737 1.17228 1.55535 1.76030 1.21969 1.02027 0.99360 0.95106 1.21267 0.94960 1.00819 0.95406 1.19604 0.97111 0.94757 0.93695 1.21163 0.95804 1.32436 1.06250 0.90950 1.25051 0.96765 0.95795 0.96015 1.69926 1.31116 1.39392 1.13958 0.86768 0.85345 0.78399 0.78679 1.20352 1.21468 1.19012 0.89982 0.93947 0.91510 0.89974 0.91016 0.90691 0.90535 0.72879 0.90806 0.87677 0.89453 0.89345 0.92073 0.92097 0.97137 0.96673 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 7.60 37.16 0.28 -1.34 16 2 C 0.14 1.39 3.48 -67.82 -0.24 1.15 16 3 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.13 -1.01 5.35 -26.83 -0.14 -1.15 16 5 C -0.10 -0.78 4.46 -26.69 -0.12 -0.90 16 6 C -0.10 -0.77 2.78 -91.65 -0.25 -1.02 16 7 H 0.12 0.87 8.14 -51.92 -0.42 0.45 16 8 C 0.49 4.14 7.63 36.00 0.27 4.41 16 9 O -0.51 -5.74 16.74 -18.75 -0.31 -6.05 16 10 O -0.51 -3.48 13.35 -39.23 -0.52 -4.00 16 11 C 0.12 1.03 5.56 -3.71 -0.02 1.01 16 12 N -0.62 -6.87 2.98 -165.47 -0.49 -7.36 16 13 C 0.52 7.59 7.50 -10.99 -0.08 7.50 16 14 O -0.52 -9.27 11.56 5.56 0.06 -9.21 16 15 C -0.14 -2.16 4.06 -27.88 -0.11 -2.27 16 16 C -0.09 -1.75 4.44 -26.73 -0.12 -1.86 16 17 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 18 C -0.52 -15.02 9.66 -34.44 -0.33 -15.35 16 19 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 20 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 21 N -0.90 -28.26 13.96 55.43 0.77 -27.49 16 22 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 25 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 26 H 0.08 1.16 6.53 -51.93 -0.34 0.82 16 27 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.91 6.97 -51.93 -0.36 0.55 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 32 H 0.08 0.57 8.07 -51.93 -0.42 0.15 16 33 H 0.41 1.17 9.10 45.56 0.41 1.58 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.11 0.88 5.93 -51.93 -0.31 0.57 16 36 H 0.09 1.16 7.70 -51.93 -0.40 0.76 16 37 H 0.09 1.18 7.93 -51.92 -0.41 0.76 16 38 H 0.06 1.30 8.10 -51.93 -0.42 0.88 16 39 H 0.06 1.30 8.10 -51.93 -0.42 0.88 16 40 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 41 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 42 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 335.31 15.07 5.05 5.05 Total: -1.00 -34.97 335.31 -7.16 -42.13 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -5.98 Total: -1.52 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -1.07 Total: -8.48 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.28 Total: -34.85 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.77 Total: -19.26 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.97 -7.16 -42.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594468027.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.945 kcal (2) G-P(sol) polarization free energy of solvation -34.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds