Wall clock time and date at job start Tue Mar 31 2020 06:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.70054 * 2 1 4 4 C 1.53196 * 109.58810 * 239.64667 * 2 1 3 5 5 C 1.53037 * 109.31207 * 294.84646 * 4 2 1 6 6 C 1.53046 * 109.53680 * 298.63469 * 5 4 2 7 7 H 1.08990 * 109.49980 * 301.37821 * 6 5 4 8 8 C 1.50698 * 109.49426 * 181.31241 * 6 5 4 9 9 O 1.20820 * 120.00526 * 0.02562 * 8 6 5 10 10 O 1.34231 * 120.00135 * 179.97438 * 8 6 5 11 11 C 1.52764 * 109.38348 * 61.24389 * 6 5 4 12 12 N 1.46923 * 109.59002 * 120.35489 * 2 1 3 13 13 C 1.34777 * 120.63273 * 246.16135 * 12 2 1 14 14 O 1.21279 * 120.00166 * 359.97438 * 13 12 2 15 15 C 1.50706 * 119.99762 * 179.97438 * 13 12 2 16 16 C 1.53002 * 109.46925 * 179.97438 * 15 13 12 17 17 C 1.52996 * 109.47340 * 180.02562 * 16 15 13 18 18 C 1.50699 * 109.47232 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99963 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99795 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99974 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99629 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47142 * 60.00574 * 22 20 18 24 24 H 1.48506 * 109.46657 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47444 * 300.00415 * 22 20 18 26 26 H 1.08998 * 109.47402 * 299.64435 * 1 2 3 27 27 H 1.09001 * 109.47186 * 59.64347 * 1 2 3 28 28 H 1.09003 * 109.47275 * 179.64302 * 1 2 3 29 29 H 1.08996 * 109.49543 * 54.79781 * 4 2 1 30 30 H 1.08999 * 109.49540 * 174.86147 * 4 2 1 31 31 H 1.09000 * 109.45865 * 58.65224 * 5 4 2 32 32 H 1.09000 * 109.46284 * 178.61487 * 5 4 2 33 33 H 0.96697 * 117.00492 * 180.02562 * 10 8 6 34 34 H 1.08995 * 109.51145 * 185.70757 * 11 6 5 35 35 H 1.08998 * 109.43430 * 65.41936 * 11 6 5 36 36 H 1.09000 * 109.47318 * 299.99141 * 15 13 12 37 37 H 1.09000 * 109.47161 * 59.99772 * 15 13 12 38 38 H 1.09004 * 109.46930 * 299.99901 * 16 15 13 39 39 H 1.09004 * 109.47059 * 59.99503 * 16 15 13 40 40 H 1.09004 * 109.46785 * 299.99692 * 17 16 15 41 41 H 1.09000 * 109.47196 * 59.99588 * 17 16 15 42 42 H 0.97002 * 119.99803 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 1.6414 -2.2040 -1.1702 6 6 2.2801 -2.8463 0.0634 7 1 3.3639 -2.7479 0.0049 8 6 1.9098 -4.3061 0.1190 9 8 1.2076 -4.7844 -0.7400 10 8 2.3610 -5.0752 1.1223 11 6 1.7740 -2.1421 1.3211 12 7 2.0225 -0.6995 1.1944 13 6 2.6943 -0.0317 2.1532 14 8 2.8978 1.1580 2.0344 15 6 3.1927 -0.7634 3.3728 16 6 3.9168 0.2185 4.2961 17 6 4.4234 -0.5243 5.5340 18 6 5.1371 0.4427 6.4431 19 1 5.2207 1.4832 6.1659 20 6 5.6826 -0.0007 7.6293 21 7 5.5804 -1.2676 7.9670 22 14 6.5679 1.1979 8.7558 23 1 5.6299 2.2715 9.1715 24 1 7.0594 0.4768 9.9574 25 1 7.7185 1.7980 8.0340 26 1 -0.3634 0.5083 0.8931 27 1 -0.3633 0.5194 -0.8868 28 1 -0.3634 -1.0277 -0.0064 29 1 1.6074 -0.2784 -2.1368 30 1 3.1296 -0.6497 -1.2916 31 1 0.5565 -2.2814 -1.0993 32 1 1.9844 -2.7202 -2.0669 33 1 2.0973 -6.0055 1.1151 34 1 2.3024 -2.5288 2.1924 35 1 0.7043 -2.3204 1.4310 36 1 2.3483 -1.2049 3.9020 37 1 3.8822 -1.5506 3.0677 38 1 4.7614 0.6597 3.7667 39 1 3.2277 1.0061 4.6011 40 1 3.5791 -0.9658 6.0636 41 1 5.1126 -1.3116 5.2286 42 1 5.9644 -1.5796 8.8014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594468029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:37 Heat of formation + Delta-G solvation = -153.613494 kcal Electronic energy + Delta-G solvation = -22766.591223 eV Core-core repulsion = 19324.544171 eV Total energy + Delta-G solvation = -3442.047053 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.09991 -39.94426 -37.69301 -36.41226 -34.29269 -33.16538 -33.00578 -31.82073 -28.51106 -27.73354 -25.11302 -24.55144 -23.79461 -21.71909 -20.70786 -19.74602 -18.63018 -18.32128 -17.30419 -16.63452 -16.42431 -16.04508 -15.73277 -15.24711 -14.92313 -14.40084 -14.20810 -13.90290 -13.66892 -13.54223 -13.21477 -12.74197 -12.45883 -12.39575 -12.22911 -11.86481 -11.76732 -11.66230 -11.39552 -11.30252 -11.10411 -10.90303 -10.77808 -10.66080 -10.56972 -10.52985 -9.66403 -9.64579 -9.25171 -9.01598 -8.75113 -8.30501 -5.96455 -3.97830 1.83219 2.60166 2.84325 3.00380 3.37431 3.40841 3.44708 4.17278 4.37841 4.44285 4.50498 4.62685 4.80769 4.92801 5.04079 5.06806 5.18771 5.22677 5.31824 5.39577 5.40375 5.55258 5.60775 5.66536 5.68490 5.70517 5.78420 5.88633 6.10338 6.19512 6.23500 6.48872 6.72812 6.93617 7.16582 7.39023 7.56896 7.71859 7.84888 8.04125 8.35758 8.48178 9.08972 9.66013 11.14971 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021209 B = 0.003589 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.889284 B = 7799.372499 C = 8855.618058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.131 3.869 3 H 0.103 0.897 4 C -0.128 4.128 5 C -0.105 4.105 6 C -0.097 4.097 7 H 0.116 0.884 8 C 0.488 3.512 9 O -0.514 6.514 10 O -0.510 6.510 11 C 0.118 3.882 12 N -0.616 5.616 13 C 0.519 3.481 14 O -0.533 6.533 15 C -0.139 4.139 16 C -0.095 4.095 17 C 0.021 3.979 18 C -0.519 4.519 19 H 0.055 0.945 20 C 0.056 3.944 21 N -0.898 5.898 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.412 0.588 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.140 -6.173 -19.118 22.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.028 3.972 3 H 0.121 0.879 4 C -0.166 4.166 5 C -0.142 4.142 6 C -0.118 4.118 7 H 0.134 0.866 8 C 0.329 3.671 9 O -0.402 6.402 10 O -0.322 6.322 11 C -0.006 4.006 12 N -0.351 5.351 13 C 0.309 3.691 14 O -0.408 6.408 15 C -0.179 4.179 16 C -0.133 4.133 17 C -0.016 4.016 18 C -0.557 4.557 19 H 0.074 0.926 20 C -0.144 4.144 21 N -0.537 5.537 22 Si 0.720 3.280 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.202 1.202 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.271 0.729 34 H 0.124 0.876 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.048 -5.345 -19.248 22.361 hybrid contribution 0.307 -0.292 0.618 0.749 sum -9.741 -5.637 -18.630 21.766 Atomic orbital electron populations 1.22149 0.95082 1.02261 1.02533 1.21178 0.94080 0.97949 0.84010 0.87881 1.21942 1.01957 0.94677 0.97995 1.21479 1.01555 0.95275 0.95934 1.21404 1.04278 0.87019 0.99053 0.86577 1.23281 0.76111 0.89583 0.78087 1.90722 1.35546 1.75065 1.38897 1.84578 1.71325 1.27242 1.49039 1.21484 1.01608 0.80665 0.96813 1.48272 1.57360 1.08051 1.21434 1.21300 0.76130 0.87702 0.83989 1.90670 1.56263 1.15502 1.78358 1.21906 1.01752 1.00617 0.93624 1.21460 0.98739 0.96865 0.96247 1.19123 0.95995 0.95512 0.90976 1.21237 1.35046 0.95371 1.04047 0.92649 1.25011 0.96364 0.95131 0.97929 1.69953 1.45936 1.14168 1.23663 0.86660 0.80130 0.81161 0.80074 1.20239 1.21341 1.20242 0.92092 0.91493 0.92249 0.90031 0.91060 0.90412 0.90635 0.72879 0.87591 0.90866 0.89308 0.89236 0.92700 0.92706 0.96613 0.96586 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.03 37.15 0.34 -1.07 16 2 C 0.13 1.34 3.21 -67.60 -0.22 1.13 16 3 H 0.10 1.26 7.01 -51.93 -0.36 0.90 16 4 C -0.13 -1.02 5.55 -26.61 -0.15 -1.17 16 5 C -0.10 -0.83 4.26 -26.69 -0.11 -0.94 16 6 C -0.10 -0.82 2.77 -91.87 -0.25 -1.08 16 7 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 8 C 0.49 4.42 7.63 36.00 0.27 4.69 16 9 O -0.51 -5.96 16.74 -18.75 -0.31 -6.27 16 10 O -0.51 -3.82 13.35 -39.26 -0.52 -4.35 16 11 C 0.12 1.11 5.11 -3.93 -0.02 1.09 16 12 N -0.62 -7.27 2.68 -165.48 -0.44 -7.71 16 13 C 0.52 8.18 7.70 -10.98 -0.08 8.10 16 14 O -0.53 -10.39 15.39 5.56 0.09 -10.30 16 15 C -0.14 -2.26 4.05 -27.88 -0.11 -2.38 16 16 C -0.10 -2.03 4.44 -26.73 -0.12 -2.15 16 17 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 18 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 19 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 21 N -0.90 -26.95 13.29 55.43 0.74 -26.22 16 22 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.48 5.74 -51.93 -0.30 0.18 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.63 6.47 -51.93 -0.34 0.30 16 32 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 33 H 0.41 1.42 9.10 45.56 0.41 1.84 16 34 H 0.11 1.00 5.93 -51.93 -0.31 0.69 16 35 H 0.07 0.63 7.52 -51.93 -0.39 0.23 16 36 H 0.09 1.32 7.95 -51.93 -0.41 0.90 16 37 H 0.09 1.32 7.68 -51.93 -0.40 0.92 16 38 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 39 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 340.31 15.07 5.13 5.13 Total: -1.00 -34.90 340.31 -7.21 -42.11 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -5.85 Total: -2.21 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -1.01 Total: -7.11 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.29 Total: -33.93 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.75 Total: -20.93 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.90 -7.21 -42.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594468029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.502 kcal (2) G-P(sol) polarization free energy of solvation -34.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds