Wall clock time and date at job start Tue Mar 31 2020 06:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.70130 * 2 1 4 4 C 1.53198 * 109.58740 * 120.35455 * 2 1 3 5 5 C 1.53038 * 109.30877 * 174.42087 * 4 2 1 6 6 C 1.53041 * 109.54154 * 298.63316 * 5 4 2 7 7 H 1.08994 * 109.49703 * 301.41560 * 6 5 4 8 8 C 1.50696 * 109.49663 * 181.31694 * 6 5 4 9 9 O 1.20825 * 120.00134 * 0.02562 * 8 6 5 10 10 O 1.34230 * 120.00133 * 180.02562 * 8 6 5 11 11 C 1.53192 * 109.31020 * 61.36855 * 6 5 4 12 12 N 1.46923 * 108.77637 * 305.36562 * 11 6 5 13 13 C 1.34787 * 120.63094 * 233.58915 * 12 11 6 14 14 O 1.21282 * 119.99904 * 174.92637 * 13 12 11 15 15 C 1.50697 * 119.99471 * 354.92439 * 13 12 11 16 16 C 1.53006 * 109.46496 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.46576 * 180.02562 * 16 15 13 18 18 C 1.50705 * 109.46923 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99840 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00192 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99817 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99977 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47543 * 90.00179 * 22 20 18 24 24 H 1.48504 * 109.47228 * 210.00079 * 22 20 18 25 25 H 1.48503 * 109.47331 * 329.99722 * 22 20 18 26 26 H 1.08994 * 109.47070 * 296.03268 * 1 2 3 27 27 H 1.09002 * 109.47446 * 56.03750 * 1 2 3 28 28 H 1.09005 * 109.47022 * 176.03698 * 1 2 3 29 29 H 1.09004 * 109.49655 * 54.47365 * 4 2 1 30 30 H 1.08997 * 109.49739 * 294.37537 * 4 2 1 31 31 H 1.08999 * 109.45771 * 58.65857 * 5 4 2 32 32 H 1.09005 * 109.45332 * 178.61452 * 5 4 2 33 33 H 0.96701 * 117.00342 * 180.02562 * 10 8 6 34 34 H 1.09001 * 109.58645 * 65.15036 * 11 6 5 35 35 H 1.08996 * 109.58873 * 185.43498 * 11 6 5 36 36 H 1.08998 * 109.47529 * 300.00109 * 15 13 12 37 37 H 1.09001 * 109.47231 * 60.00771 * 15 13 12 38 38 H 1.08998 * 109.47477 * 300.00332 * 16 15 13 39 39 H 1.08997 * 109.47018 * 60.00763 * 16 15 13 40 40 H 1.08998 * 109.47476 * 300.00316 * 17 16 15 41 41 H 1.09001 * 109.47205 * 60.00930 * 17 16 15 42 42 H 0.97000 * 119.99987 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0436 -0.7294 1.2455 5 6 3.5675 -0.8479 1.1701 6 6 3.9569 -1.6657 -0.0635 7 1 3.4984 -2.6528 -0.0052 8 6 5.4560 -1.8093 -0.1191 9 8 6.1431 -1.3093 0.7399 10 8 6.0281 -2.4925 -1.1230 11 6 3.4650 -0.9470 -1.3238 12 7 2.0226 -0.6995 -1.1945 13 6 1.1674 -1.1062 -2.1536 14 8 -0.0281 -0.9790 -1.9938 15 6 1.6968 -1.7190 -3.4245 16 6 0.5265 -2.0909 -4.3373 17 6 1.0640 -2.7136 -5.6274 18 6 -0.0887 -3.0794 -6.5268 19 1 -1.1030 -2.8865 -6.2100 20 6 0.1517 -3.6602 -7.7539 21 7 1.3870 -3.8945 -8.1398 22 14 -1.2769 -4.1129 -8.8689 23 1 -1.5977 -2.9642 -9.7536 24 1 -0.9049 -5.2874 -9.6981 25 1 -2.4640 -4.4471 -8.0416 26 1 -0.3633 0.4510 0.9234 27 1 -0.3634 0.5741 -0.8523 28 1 -0.3633 -1.0253 -0.0710 29 1 1.6030 -1.7254 1.2914 30 1 1.7661 -0.1668 2.1368 31 1 4.0061 0.1474 1.0993 32 1 3.9378 -1.3448 2.0669 33 1 6.9928 -2.5578 -1.1158 34 1 3.9903 0.0020 -1.4317 35 1 3.6541 -1.5706 -2.1974 36 1 2.3409 -1.0016 -3.9330 37 1 2.2691 -2.6152 -3.1849 38 1 -0.1173 -2.8084 -3.8287 39 1 -0.0462 -1.1950 -4.5771 40 1 1.7080 -1.9964 -6.1362 41 1 1.6364 -3.6096 -5.3873 42 1 1.5561 -4.3035 -9.0030 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594468030.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:40 Heat of formation + Delta-G solvation = -139.063078 kcal Electronic energy + Delta-G solvation = -22799.229125 eV Core-core repulsion = 19357.813026 eV Total energy + Delta-G solvation = -3441.416099 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.08821 -40.08447 -37.47196 -36.39976 -34.45354 -33.21686 -33.07058 -31.77859 -28.51834 -27.52029 -25.25372 -24.06353 -23.56086 -21.91767 -20.60983 -20.02491 -18.91007 -18.34712 -17.16797 -16.73585 -16.22702 -16.02507 -15.66625 -15.51742 -14.59278 -14.40783 -14.26881 -13.92378 -13.81009 -13.41688 -12.81291 -12.79903 -12.38566 -12.33523 -12.22634 -11.84231 -11.75880 -11.55041 -11.25675 -11.25584 -11.14585 -11.07184 -10.82867 -10.79485 -10.54808 -10.50519 -9.66537 -9.37525 -9.10647 -8.78270 -8.65550 -8.31237 -5.96985 -3.98301 1.82692 2.59511 2.84764 3.00719 3.35230 3.41136 3.45828 4.17100 4.36638 4.46867 4.50370 4.61007 4.84392 4.93807 5.05322 5.08958 5.16883 5.37679 5.39201 5.41125 5.50683 5.58869 5.65973 5.68269 5.70643 5.75922 5.90019 6.16727 6.19150 6.22106 6.35881 6.66526 6.72901 6.93443 7.16459 7.41287 7.56547 7.71762 7.84609 8.03760 8.39110 8.47730 9.08791 9.65658 11.14495 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.019933 B = 0.003690 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.393698 B = 7587.265397 C = 8842.693369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.140 3.860 3 H 0.069 0.931 4 C -0.131 4.131 5 C -0.104 4.104 6 C -0.098 4.098 7 H 0.116 0.884 8 C 0.488 3.512 9 O -0.514 6.514 10 O -0.510 6.510 11 C 0.120 3.880 12 N -0.619 5.619 13 C 0.517 3.483 14 O -0.523 6.523 15 C -0.142 4.142 16 C -0.094 4.094 17 C 0.020 3.980 18 C -0.518 4.518 19 H 0.056 0.944 20 C 0.056 3.944 21 N -0.898 5.898 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.412 0.588 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.015 0.985 41 H 0.016 0.984 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.386 6.351 19.230 21.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.037 3.963 3 H 0.087 0.913 4 C -0.169 4.169 5 C -0.141 4.141 6 C -0.118 4.118 7 H 0.134 0.866 8 C 0.329 3.671 9 O -0.402 6.402 10 O -0.322 6.322 11 C -0.004 4.004 12 N -0.354 5.354 13 C 0.308 3.692 14 O -0.399 6.399 15 C -0.181 4.181 16 C -0.132 4.132 17 C -0.017 4.017 18 C -0.556 4.556 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.537 5.537 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.198 1.198 26 H 0.058 0.942 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.271 0.729 34 H 0.091 0.909 35 H 0.124 0.876 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.569 6.515 19.385 21.807 hybrid contribution 0.250 -0.383 -0.622 0.772 sum 7.819 6.131 18.764 21.233 Atomic orbital electron populations 1.22207 0.92193 1.04228 1.00626 1.21318 0.96197 0.94928 0.83885 0.91254 1.22049 0.94609 1.02043 0.98211 1.21448 0.96132 1.00570 0.95974 1.21486 0.87692 1.03564 0.99027 0.86575 1.23279 0.91725 0.73966 0.78091 1.90724 1.65028 1.45561 1.38918 1.84578 1.29466 1.69161 1.48992 1.21574 0.81418 1.00659 0.96781 1.48239 1.06509 1.59403 1.21281 1.21241 0.86352 0.76969 0.84670 1.90734 1.15677 1.54374 1.79110 1.21946 1.01946 1.01205 0.93046 1.21447 0.94829 1.00685 0.96248 1.19130 0.96414 0.95600 0.90527 1.21273 0.93263 1.39578 1.01486 0.92603 1.25013 0.95555 0.95897 0.98011 1.69962 1.18797 1.43971 1.20990 0.86602 0.82805 0.77968 0.80694 1.20697 1.21278 1.19844 0.94206 0.90802 0.90771 0.91011 0.90098 0.90706 0.90586 0.72869 0.90853 0.87556 0.89395 0.89383 0.92711 0.92717 0.96641 0.96600 0.93087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 7.59 37.16 0.28 -1.35 16 2 C 0.14 1.44 3.49 -67.59 -0.24 1.21 16 3 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 4 C -0.13 -1.07 5.37 -26.61 -0.14 -1.21 16 5 C -0.10 -0.83 4.46 -26.69 -0.12 -0.95 16 6 C -0.10 -0.83 2.78 -91.65 -0.25 -1.08 16 7 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 8 C 0.49 4.43 7.63 36.00 0.27 4.71 16 9 O -0.51 -6.00 16.74 -18.75 -0.31 -6.32 16 10 O -0.51 -3.82 13.35 -39.26 -0.52 -4.34 16 11 C 0.12 1.12 5.54 -3.71 -0.02 1.10 16 12 N -0.62 -7.24 2.97 -165.22 -0.49 -7.73 16 13 C 0.52 7.93 7.60 -10.98 -0.08 7.84 16 14 O -0.52 -9.55 11.38 5.56 0.06 -9.48 16 15 C -0.14 -2.27 4.10 -27.88 -0.11 -2.39 16 16 C -0.09 -1.99 4.44 -26.73 -0.12 -2.10 16 17 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 18 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 19 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 22 Si 0.89 21.92 29.54 -169.99 -5.02 16.89 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 26 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 1.06 6.76 -51.93 -0.35 0.71 16 28 H 0.07 1.05 6.73 -51.93 -0.35 0.70 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.62 8.13 -51.93 -0.42 0.19 16 32 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 33 H 0.41 1.42 9.10 45.56 0.41 1.83 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.11 0.99 5.97 -51.93 -0.31 0.68 16 36 H 0.09 1.30 8.11 -51.93 -0.42 0.88 16 37 H 0.09 1.29 7.48 -51.93 -0.39 0.90 16 38 H 0.05 1.20 8.10 -51.93 -0.42 0.78 16 39 H 0.05 1.20 8.10 -51.93 -0.42 0.78 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 338.89 15.07 5.11 5.11 Total: -1.00 -34.17 338.89 -7.54 -41.71 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -6.01 Total: -2.12 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -1.08 Total: -7.53 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: 0.25 Total: -33.93 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.77 Total: -20.14 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.17 -7.54 -41.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594468030.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.353 kcal (2) G-P(sol) polarization free energy of solvation -34.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds