Wall clock time and date at job start Tue Mar 31 2020 06:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.58554 * 2 1 4 4 C 1.53188 * 109.59182 * 120.28864 * 2 1 3 5 5 C 1.53044 * 109.31355 * 65.14832 * 4 2 1 6 6 C 1.53044 * 109.53236 * 61.36669 * 5 4 2 7 7 H 1.09000 * 109.49424 * 58.59135 * 6 5 4 8 8 C 1.50707 * 109.49566 * 178.64833 * 6 5 4 9 9 O 1.20822 * 119.99953 * 0.02562 * 8 6 5 10 10 O 1.34231 * 119.99678 * 180.02562 * 8 6 5 11 11 C 1.53188 * 109.31866 * 298.63635 * 6 5 4 12 12 N 1.46925 * 109.58677 * 239.72581 * 2 1 3 13 13 C 1.34774 * 120.63885 * 113.82435 * 12 2 1 14 14 O 1.21285 * 119.99496 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00849 * 180.02562 * 13 12 2 16 16 C 1.52991 * 109.47361 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47002 * 179.97438 * 16 15 13 18 18 C 1.50701 * 109.47266 * 180.02562 * 17 16 15 19 19 H 1.08004 * 120.00262 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00263 * 180.02562 * 18 17 16 21 21 N 1.31509 * 119.99759 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99831 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47539 * 59.99819 * 22 20 18 24 24 H 1.48508 * 109.47148 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47187 * 299.99598 * 22 20 18 26 26 H 1.09002 * 109.47153 * 299.99350 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99522 * 1 2 3 29 29 H 1.08998 * 109.50354 * 185.10147 * 4 2 1 30 30 H 1.09003 * 109.49864 * 305.17284 * 4 2 1 31 31 H 1.08993 * 109.46159 * 181.38767 * 5 4 2 32 32 H 1.09005 * 109.46201 * 301.36801 * 5 4 2 33 33 H 0.96704 * 116.99332 * 180.02562 * 10 8 6 34 34 H 1.08994 * 109.59073 * 174.42494 * 11 6 5 35 35 H 1.09000 * 109.58537 * 294.70886 * 11 6 5 36 36 H 1.08999 * 109.46588 * 299.99588 * 15 13 12 37 37 H 1.09001 * 109.46932 * 59.99264 * 15 13 12 38 38 H 1.08999 * 109.47368 * 299.99642 * 16 15 13 39 39 H 1.09001 * 109.47264 * 59.99999 * 16 15 13 40 40 H 1.09003 * 109.47415 * 300.00105 * 17 16 15 41 41 H 1.08998 * 109.47558 * 60.00454 * 17 16 15 42 42 H 0.97001 * 120.00063 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7279 1.2462 5 6 1.6415 -2.2027 1.1727 6 6 2.2801 -2.8464 -0.0602 7 1 3.3640 -2.7473 -0.0021 8 6 1.9106 -4.3065 -0.1136 9 8 1.2082 -4.7837 0.7458 10 8 2.3619 -5.0767 -1.1161 11 6 1.7692 -2.1425 -1.3213 12 7 2.0225 -0.6978 -1.1955 13 6 2.6941 -0.0288 -2.1535 14 8 2.8965 1.1610 -2.0336 15 6 3.1924 -0.7586 -3.3741 16 6 3.9150 0.2248 -4.2968 17 6 4.4215 -0.5164 -5.5357 18 6 5.1338 0.4522 -6.4443 19 1 5.2174 1.4923 -6.1658 20 6 5.6789 0.0105 -7.6313 21 7 5.5777 -1.2561 -7.9703 22 14 6.5625 1.2110 -8.7571 23 1 7.7131 1.8114 -8.0354 24 1 7.0540 0.4916 -9.9598 25 1 5.6233 2.2842 -9.1711 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 3.1298 -0.6488 1.2920 30 1 1.6080 -0.2756 2.1372 31 1 1.9845 -2.7177 2.0700 32 1 0.5565 -2.2802 1.1017 33 1 2.0981 -6.0070 -1.1078 34 1 2.2944 -2.5300 -2.1942 35 1 0.6992 -2.3194 -1.4304 36 1 3.8821 -1.5460 -3.0702 37 1 2.3480 -1.1998 -3.9036 38 1 3.2250 1.0120 -4.6007 39 1 4.7594 0.6662 -3.7675 40 1 5.1116 -1.3033 -5.2316 41 1 3.5774 -0.9581 -6.0653 42 1 5.9615 -1.5670 -8.8051 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594468032.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:42 Heat of formation + Delta-G solvation = -153.727577 kcal Electronic energy + Delta-G solvation = -22760.919503 eV Core-core repulsion = 19318.867504 eV Total energy + Delta-G solvation = -3442.052000 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.08179 -39.93560 -37.68482 -36.41211 -34.28889 -33.15008 -32.99097 -31.81916 -28.50790 -27.73120 -25.11829 -24.54813 -23.79143 -21.71614 -20.70373 -19.74484 -18.63076 -18.32003 -17.29974 -16.62914 -16.42083 -16.04632 -15.72991 -15.24731 -14.92112 -14.40039 -14.20371 -13.89906 -13.66807 -13.53664 -13.21252 -12.74071 -12.45994 -12.39355 -12.22895 -11.86541 -11.76733 -11.66150 -11.39483 -11.30430 -11.10336 -10.90328 -10.77794 -10.65954 -10.57058 -10.52996 -9.66400 -9.64613 -9.25159 -9.01584 -8.75193 -8.30537 -5.96448 -3.97819 1.83052 2.60203 2.84329 3.00040 3.37426 3.40842 3.44695 4.17250 4.37053 4.44318 4.50502 4.62522 4.80630 4.92719 5.03956 5.06884 5.18595 5.22743 5.31810 5.39602 5.40352 5.55206 5.60736 5.66599 5.68536 5.70514 5.78450 5.88783 6.10285 6.19391 6.23425 6.48474 6.72862 6.93639 7.16598 7.39079 7.56833 7.71883 7.84903 8.04136 8.35822 8.48180 9.08981 9.66025 11.14998 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021215 B = 0.003585 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.510981 B = 7808.390868 C = 8863.928531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.131 3.869 3 H 0.103 0.897 4 C -0.127 4.127 5 C -0.105 4.105 6 C -0.097 4.097 7 H 0.116 0.884 8 C 0.488 3.512 9 O -0.514 6.514 10 O -0.510 6.510 11 C 0.119 3.881 12 N -0.616 5.616 13 C 0.519 3.481 14 O -0.533 6.533 15 C -0.139 4.139 16 C -0.095 4.095 17 C 0.021 3.979 18 C -0.519 4.519 19 H 0.055 0.945 20 C 0.056 3.944 21 N -0.898 5.898 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.412 0.588 34 H 0.106 0.894 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.140 -6.214 19.126 22.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 H 0.121 0.879 4 C -0.165 4.165 5 C -0.142 4.142 6 C -0.117 4.117 7 H 0.134 0.866 8 C 0.329 3.671 9 O -0.402 6.402 10 O -0.322 6.322 11 C -0.005 4.005 12 N -0.352 5.352 13 C 0.309 3.691 14 O -0.408 6.408 15 C -0.179 4.179 16 C -0.133 4.133 17 C -0.016 4.016 18 C -0.557 4.557 19 H 0.073 0.927 20 C -0.144 4.144 21 N -0.537 5.537 22 Si 0.720 3.280 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.202 1.202 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.271 0.729 34 H 0.124 0.876 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.047 -5.385 19.255 22.376 hybrid contribution 0.305 -0.289 -0.619 0.748 sum -9.741 -5.674 18.636 21.781 Atomic orbital electron populations 1.22153 0.95097 1.02256 1.02525 1.21171 0.94075 0.97976 0.84031 0.87907 1.21939 1.01955 0.94678 0.97976 1.21480 1.01556 0.95270 0.95939 1.21478 1.04256 0.86981 0.99018 0.86564 1.23289 0.76110 0.89590 0.78091 1.90722 1.35533 1.75140 1.38838 1.84582 1.71320 1.27205 1.49075 1.21608 1.01563 0.80591 0.96763 1.48336 1.57336 1.08107 1.21379 1.21292 0.76131 0.87676 0.83988 1.90672 1.56302 1.15479 1.78352 1.21900 1.01756 1.00630 0.93601 1.21457 0.98753 0.96850 0.96250 1.19123 0.95997 0.95520 0.90967 1.21238 1.35090 0.95375 1.04002 0.92650 1.25009 0.96360 0.95133 0.97933 1.69950 1.45945 1.14214 1.23611 0.86661 0.80123 0.81174 0.80068 1.20240 1.21342 1.20238 0.91494 0.92257 0.92101 0.91066 0.90026 0.90638 0.90416 0.72883 0.87624 0.90800 0.89238 0.89318 0.92705 0.92699 0.96588 0.96611 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.02 37.16 0.34 -1.07 16 2 C 0.13 1.34 3.20 -67.60 -0.22 1.12 16 3 H 0.10 1.26 7.00 -51.93 -0.36 0.90 16 4 C -0.13 -1.02 5.55 -26.61 -0.15 -1.16 16 5 C -0.10 -0.83 4.25 -26.69 -0.11 -0.94 16 6 C -0.10 -0.82 2.78 -91.65 -0.25 -1.07 16 7 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 8 C 0.49 4.41 7.63 36.01 0.27 4.68 16 9 O -0.51 -5.95 16.74 -18.75 -0.31 -6.27 16 10 O -0.51 -3.81 13.36 -39.26 -0.52 -4.34 16 11 C 0.12 1.11 5.15 -3.56 -0.02 1.09 16 12 N -0.62 -7.27 2.69 -165.00 -0.44 -7.71 16 13 C 0.52 8.19 7.70 -10.99 -0.08 8.11 16 14 O -0.53 -10.40 15.39 5.55 0.09 -10.31 16 15 C -0.14 -2.26 4.05 -27.89 -0.11 -2.38 16 16 C -0.10 -2.03 4.44 -26.74 -0.12 -2.15 16 17 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 18 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 19 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 21 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 22 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.48 5.73 -51.93 -0.30 0.18 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 32 H 0.08 0.63 6.48 -51.93 -0.34 0.29 16 33 H 0.41 1.42 9.10 45.56 0.41 1.83 16 34 H 0.11 0.99 5.97 -51.93 -0.31 0.68 16 35 H 0.07 0.63 7.50 -51.93 -0.39 0.24 16 36 H 0.09 1.32 7.70 -51.93 -0.40 0.92 16 37 H 0.09 1.32 7.96 -51.93 -0.41 0.90 16 38 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 39 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 340.39 15.07 5.13 5.13 Total: -1.00 -34.91 340.39 -7.21 -42.12 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -5.86 Total: -2.23 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -1.01 Total: -7.11 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: 0.29 Total: -33.93 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.75 Total: -20.92 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.91 -7.21 -42.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594468032.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.606 kcal (2) G-P(sol) polarization free energy of solvation -34.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds